MS027708.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS027708.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DEAD-box ATP-dependent RNA helicase 57
Location	scaffold729: 1408764 .. 1412144 (+)
Sequence length	1608
RNA-Seq Expression	MS027708.1
Synteny	MS027708.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAGGGGCTTCTTTCTTGTTCGCCGGCATTCACTTCGATAAGAAGAGGTTTGCCGCAGATATCTCTAGGTTCGAGGTAAACGCTTTTAGCTGCTCTGTTAATGCGTTTTCTGAGAAATTTGAAGGATTCTGCGAAATGTCAATTGGAAATTCAATTGTGCCGTTCTAACAGGGAAAAAGAGGAAGTGAAAATGTAGCGGAAGGTCTGAGTTCGATCGGTAATGGTGATTTCGAAGTCAATGGGGGCTCAACGCCTTCGGAGAAGAGGAAGAGGAAGAGAAAATCAGCAGCTACGGGTACATTTCCGTTTGCTTTTCATGGCTTGTCGCTAATCGCGTGATTGAAAATCTTCGAGCTAACTGTCGTTTTTCGTCTTCTCTATTTAGAATCAGTGGAGGGATTCAGCGTCTTTAAGGATTCAAAATCAAAAGCAGCTGCTTCAGTGAATGAAGAAAATCATCCGCCTGAAAATGATCCTTCTGAAGAGAAGAAGGAATTTTATAGGAAACTTGAGGTACTAATTGCTCTTTGGTATTTCATTGTTTCCTTTGTGAATAATCGTTTTAACTTCTATACCACACGGTCTCTGTTCAACGTTCATTCCTTATTTATTTATTTTTTTTTTGACGACGAACTTAGAGAGATGCACTTTTTCGGAAGAAGTATAATATCCATGTTTCTGGGAACAATGTACCGTCTCCACTTCAGAATTTTGCAGAGTTGAGCACAAGGTAGTTCATTCTGTACTAGCTGGATGGTTTTTCAGTATCCGCACGTTCAATGACTATTAAGATCTACCTTGAGCAGAATCATCTTAATCAAGTTAATGACAAACCACAATTTTTTTTAATGTTATCATGTTTATTCTTTAACTCAGACGAAAATTTTCTGTCATTTATAAATTATTGCTCCCCTTCTTTTTTCTGATTATTATGACTGAAAAATGATGACCAGTATTGTTTATTTGCAGATTTGAGTGTGACTCATACTTGATACGCAATCTTGTTGAACTTGGATTTAAAGAGCCAACACCAATCCAAAGGCAGGCTATTCCAGTCCTCTTATCTGTATGATCTTCCATTACTATCTTTCGTGTGGAGTTACTTCATCTTTCAGGAGTTGTGCTTCAATATATTGAGAATAAGTAGCATATAGTTGTAACCTGATACTTTCATTTTAGGTCGACTATTTTGATATATTATTTGGTTTTAATTGTTTTTTCTGATCAATATTTTCTTCTAGGGCCGTGAATGCTTTGCTTGTGCTCCTACTGGATCGGGAAAAACCCTGGCTTTTGTGTGCCCTATGCTTATGAAACTTAAGGTATGAACTTTTAAGTGCCATTTTTAATATTTCTTGAATGGGGTTTATGTTCTAATCTCATGTTTATTATCAGCAACCATCAAAGGAAGCCATCCGTGCTGTTATACTTTGTCCTACTCGAGAATTAGCATCTCAGACAACGAGGGAGTGCAAAAAATTGGCTAAAGGGACAAAATTTCGTATCAAGATGGTGACAAAAGAAGTTCTAAGACATGCTGATTTCTCAAAGTTTTCATGTGATGTACTCATATCCACGCCACTTAGGTTAAGGCTTGCTATTCGGAAAAAGAAAGTTGATCTCAGTAGGTAGGTGTTGATGAGAGGTACCGGCACTTTGTCAATACAAGACAAGCCTAGCTATAACTGAGTTCTCACACAGGGTTGGCATTTTGCAGGGTGGAGTACCTTGTTTTGGATGAATCTGATAAGCTATTTGAGCTGGGCTTGTTGAAACAGATCGACTCCATCGTAAAAGCATGCTCAAATCCTTCAATAATTCGCTCATTGTTTAGTGCTACTTTACCTGATTTTGTTGAGGACCTTGCTCGTTCAGTAATGCATGATGCCGTTCGGGTTATTGTTGGTAGGAAGTAAGTCTGCCGCTATCATGCTCAACCCAATATCATTGATTCACATGATATTCTTCCAGTGAAGAAATAACTCCCATATTTTTTAATGTCATCAGGAACACTGCCTCTGAAACTGTCAAGCAAAAACTGGTTTTTGCTGGAAGTGAAGAAGGGAAACTTCTTGCTCTTCGTCAAAGTTTTTCAGAGGTTTGTTACATGTAAATTATAACACAAAACTTGTTATTTGAGCAGAAATTGAAGAATCTATCTTTTATCACAAATAGAAATCCTTTGAAGTGATTTTTCATTGCATGAAATGTCAGCCTGGATTTTCTTTGTTTGATCTAGATGATAGTATAAACTTGTTTCTTGGATACATGATTTATTGCTCTCATCTCTGTATCAAGTAGAATACTTATTCTGACATCTTTTGTTTTGACAATATTTTTCGCTTTGATCCTACTGAACAATGCATTGTTTTCGTTGCGTTCGTACTTAACAGAGTTTGAATCCACCAGTATTGATCTTTGTGCAAAGCAAGGAGCGTGCAAAAGAACTTTATGGTGAACTGGCATTTGAGAATATCAGAGTCAATGTCATCCATTCTGACTTGTCACAGATTGAGGTAATCTTTTTGTCATCAATCGATAAGATAGATATTAACATTCTGTTGCTGCAGTCAAAAGTTGATGAAAATGCAAAAGATACAAAAAAATGTAATTCCAAATAGGAAGCTGGAACAATGACTATGCTGAATAGCTTTAAGTGGTCTAGATAAAACCCGGACAGCGAAGAACATGGTGATTCTGTTGTATTCCTAGTTGGGGCCTTCCCGTCCTAGGCTCCTACTGAAAAATAAAACACATGACGGGTTTTTCGGTTTTCTCTTCCATTCTGTTGGATCTGTGTTTGTTTAGTGACTAACTACTGAAAATATAGGTTCTACCAATATTTTCCATTCTTTGACTAATCTTCATACTTGAATGCAGCGAGAAAATGCTGTCGATGACTTTAGAGCTGGGAAGTCTTGGGTTTTAATTGCCACCGACGTAATTGCTCGCGGAATGGATTTCAAAGGGGTTAATTGTGTGATCAATTATGACTTTCCAGATTCTGCAGCTGCCTACATTCACCGGATTGGTATGTTCCTTAGCTCGATGCTGCGTTCTTTGTTCTACAACTCGACAGTGCCTTTTGTGTTTAATCCTTAATAAAATCGAAAGATTCACGCTCGATACGACGGCTGATACCGAGTTCTATTTTCTCATACAGGCCGTTCTGGCAGAGCGGGGCGGAGTGGAGAAGCCATTACTTTTTATACAGAGGACGACATCCCATTTCTGCGAAATATAGCCAATGTGATGGCAGCGTCGGGCTGTGAGGTTCCATCTTGGATCAGCGAGTTGCGAAAAAAGAGATGGAAAAAACACAGGCCTAAAAGAGATTCGATCTCAACCAAACCGAAGGATGATGATGAAGCTTAA

mRNA sequence

ATGGAGAAAGGGGCTTCTTTCTTGTTCGCCGGCATTCACTTCGATAAGAAGAGGTTTGCCGCAGATATCTCTAGGTTCGAGGGAAAAAGAGGAAGTGAAAATGTAGCGGAAGGTCTGAGTTCGATCGGTAATGGTGATTTCGAAGTCAATGGGGGCTCAACGCCTTCGGAGAAGAGGAAGAGGAAGAGAAAATCAGCAGCTACGGAATCAGTGGAGGGATTCAGCGTCTTTAAGGATTCAAAATCAAAAGCAGCTGCTTCAGTGAATGAAGAAAATCATCCGCCTGAAAATGATCCTTCTGAAGAGAAGAAGGAATTTTATAGGAAACTTGAGAGAGATGCACTTTTTCGGAAGAAGTATAATATCCATGTTTCTGGGAACAATGTACCGTCTCCACTTCAGAATTTTGCAGAGTTGAGCACAAGATTTGAGTGTGACTCATACTTGATACGCAATCTTGTTGAACTTGGATTTAAAGAGCCAACACCAATCCAAAGGCAGGCTATTCCAGTCCTCTTATCTGGCCGTGAATGCTTTGCTTGTGCTCCTACTGGATCGGGAAAAACCCTGGCTTTTGTGTGCCCTATGCTTATGAAACTTAAGCAACCATCAAAGGAAGCCATCCGTGCTGTTATACTTTGTCCTACTCGAGAATTAGCATCTCAGACAACGAGGGAGTGCAAAAAATTGGCTAAAGGGACAAAATTTCGTATCAAGATGGTGACAAAAGAAGTTCTAAGACATGCTGATTTCTCAAAGTTTTCATGTGATGTACTCATATCCACGCCACTTAGGTTAAGGCTTGCTATTCGGAAAAAGAAAGTTGATCTCAGTAGGGTGGAGTACCTTGTTTTGGATGAATCTGATAAGCTATTTGAGCTGGGCTTGTTGAAACAGATCGACTCCATCGTAAAAGCATGCTCAAATCCTTCAATAATTCGCTCATTGTTTAGTGCTACTTTACCTGATTTTGTTGAGGACCTTGCTCGTTCAGTAATGCATGATGCCGTTCGGGTTATTGTTGGTAGGAAGAACACTGCCTCTGAAACTGTCAAGCAAAAACTGGTTTTTGCTGGAAGTGAAGAAGGGAAACTTCTTGCTCTTCGTCAAAGTTTTTCAGAGAGTTTGAATCCACCAGTATTGATCTTTGTGCAAAGCAAGGAGCGTGCAAAAGAACTTTATGGTGAACTGGCATTTGAGAATATCAGAGTCAATGTCATCCATTCTGACTTGTCACAGATTGAGCGAGAAAATGCTGTCGATGACTTTAGAGCTGGGAAGTCTTGGGTTTTAATTGCCACCGACGTAATTGCTCGCGGAATGGATTTCAAAGGGGTTAATTGTGTGATCAATTATGACTTTCCAGATTCTGCAGCTGCCTACATTCACCGGATTGGCCGTTCTGGCAGAGCGGGGCGGAGTGGAGAAGCCATTACTTTTTATACAGAGGACGACATCCCATTTCTGCGAAATATAGCCAATGTGATGGCAGCGTCGGGCTGTGAGGTTCCATCTTGGATCAGCGAGTTGCGAAAAAAGAGATGGAAAAAACACAGGCCTAAAAGAGATTCGATCTCAACCAAACCGAAGGATGATGATGAAGCTTAA

Coding sequence (CDS)

ATGGAGAAAGGGGCTTCTTTCTTGTTCGCCGGCATTCACTTCGATAAGAAGAGGTTTGCCGCAGATATCTCTAGGTTCGAGGGAAAAAGAGGAAGTGAAAATGTAGCGGAAGGTCTGAGTTCGATCGGTAATGGTGATTTCGAAGTCAATGGGGGCTCAACGCCTTCGGAGAAGAGGAAGAGGAAGAGAAAATCAGCAGCTACGGAATCAGTGGAGGGATTCAGCGTCTTTAAGGATTCAAAATCAAAAGCAGCTGCTTCAGTGAATGAAGAAAATCATCCGCCTGAAAATGATCCTTCTGAAGAGAAGAAGGAATTTTATAGGAAACTTGAGAGAGATGCACTTTTTCGGAAGAAGTATAATATCCATGTTTCTGGGAACAATGTACCGTCTCCACTTCAGAATTTTGCAGAGTTGAGCACAAGATTTGAGTGTGACTCATACTTGATACGCAATCTTGTTGAACTTGGATTTAAAGAGCCAACACCAATCCAAAGGCAGGCTATTCCAGTCCTCTTATCTGGCCGTGAATGCTTTGCTTGTGCTCCTACTGGATCGGGAAAAACCCTGGCTTTTGTGTGCCCTATGCTTATGAAACTTAAGCAACCATCAAAGGAAGCCATCCGTGCTGTTATACTTTGTCCTACTCGAGAATTAGCATCTCAGACAACGAGGGAGTGCAAAAAATTGGCTAAAGGGACAAAATTTCGTATCAAGATGGTGACAAAAGAAGTTCTAAGACATGCTGATTTCTCAAAGTTTTCATGTGATGTACTCATATCCACGCCACTTAGGTTAAGGCTTGCTATTCGGAAAAAGAAAGTTGATCTCAGTAGGGTGGAGTACCTTGTTTTGGATGAATCTGATAAGCTATTTGAGCTGGGCTTGTTGAAACAGATCGACTCCATCGTAAAAGCATGCTCAAATCCTTCAATAATTCGCTCATTGTTTAGTGCTACTTTACCTGATTTTGTTGAGGACCTTGCTCGTTCAGTAATGCATGATGCCGTTCGGGTTATTGTTGGTAGGAAGAACACTGCCTCTGAAACTGTCAAGCAAAAACTGGTTTTTGCTGGAAGTGAAGAAGGGAAACTTCTTGCTCTTCGTCAAAGTTTTTCAGAGAGTTTGAATCCACCAGTATTGATCTTTGTGCAAAGCAAGGAGCGTGCAAAAGAACTTTATGGTGAACTGGCATTTGAGAATATCAGAGTCAATGTCATCCATTCTGACTTGTCACAGATTGAGCGAGAAAATGCTGTCGATGACTTTAGAGCTGGGAAGTCTTGGGTTTTAATTGCCACCGACGTAATTGCTCGCGGAATGGATTTCAAAGGGGTTAATTGTGTGATCAATTATGACTTTCCAGATTCTGCAGCTGCCTACATTCACCGGATTGGCCGTTCTGGCAGAGCGGGGCGGAGTGGAGAAGCCATTACTTTTTATACAGAGGACGACATCCCATTTCTGCGAAATATAGCCAATGTGATGGCAGCGTCGGGCTGTGAGGTTCCATCTTGGATCAGCGAGTTGCGAAAAAAGAGATGGAAAAAACACAGGCCTAAAAGAGATTCGATCTCAACCAAACCGAAGGATGATGATGAAGCTTAA

Protein sequence

MEKGASFLFAGIHFDKKRFAADISRFEGKRGSENVAEGLSSIGNGDFEVNGGSTPSEKRKRKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPSEEKKEFYRKLERDALFRKKYNIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRECFACAPTGSGKTLAFVCPMLMKLKQPSKEAIRAVILCPTRELASQTTRECKKLAKGTKFRIKMVTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELGLLKQIDSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGSEEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLSQIERENAVDDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITFYTEDDIPFLRNIANVMAASGCEVPSWISELRKKRWKKHRPKRDSISTKPKDDDEA

Homology

[Close]

BLAST of MS027708.1 vs. NCBI nr
Match: XP_022145743.1 (DEAD-box ATP-dependent RNA helicase 57 [Momordica charantia])

HSP 1 Score: 1030.4 bits (2663), Expect = 5.5e-297
Identity = 529/535 (98.88%), Postives = 531/535 (99.25%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADISRFEGKRGSENVAEGLSSIGNGDFEVNGGSTPSEKRK 60
           MEKGASFLFAGIHFDKKRFAAD SRFEGKRGSENVAEGLSSIGNGDFEVNGGSTPSEKRK
Sbjct: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKRGSENVAEGLSSIGNGDFEVNGGSTPSEKRK 60

Query: 61  RKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPSEEKKEFYRKLERDALFRKKY 120
           RKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPSEEKKEFYRKLERDALFRKKY
Sbjct: 61  RKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPSEEKKEFYRKLERDALFRKKY 120

Query: 121 NIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
           NIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 NIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGSGKTLAFVCPMLMKLKQPSKEAIRAVILCPTRELASQTTRECKKLAKGTKFRIKM 240
           CAPTGSGKTLAFVCPMLMKLKQPSKEAIRA ILCPT+ELASQTTRECK+LAKG KFRIKM
Sbjct: 181 CAPTGSGKTLAFVCPMLMKLKQPSKEAIRAAILCPTQELASQTTRECKRLAKGKKFRIKM 240

Query: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELGLLKQI 300
           VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELGLLKQI
Sbjct: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELGLLKQI 300

Query: 301 DSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360
           DSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS
Sbjct: 301 DSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLSQIERENAV 420
           EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLSQIERENAV
Sbjct: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLSQIERENAV 420

Query: 421 DDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF 480
           DDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF
Sbjct: 421 DDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF 480

Query: 481 YTEDDIPFLRNIANVMAASGCEVPSWISELRKKRWKKHRPKRDSISTKPKDDDEA 536
           YTEDDIPFLRNIANVMAASGCEVPSWIS LRKKRWKKHRPKRDSISTKPKDDDEA
Sbjct: 481 YTEDDIPFLRNIANVMAASGCEVPSWISRLRKKRWKKHRPKRDSISTKPKDDDEA 535

[Close]

BLAST of MS027708.1 vs. NCBI nr
Match: XP_038903184.1 (DEAD-box ATP-dependent RNA helicase 57 [Benincasa hispida])

HSP 1 Score: 957.2 bits (2473), Expect = 5.9e-275
Identity = 486/535 (90.84%), Postives = 508/535 (94.95%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADISRFEGKRGSENVAEGLSSIGNGDFEVNGGSTPSEKRK 60
           MEKG SFLFAGIHF+KKRFA D SRFEGK+ SENV EGL SIGNGD EV+  ST S+KRK
Sbjct: 1   MEKGTSFLFAGIHFNKKRFATDFSRFEGKKESENVVEGLCSIGNGDLEVHESSTSSDKRK 60

Query: 61  RKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPSEEKKEFYRKLERDALFRKKY 120
           RKRK+A  ESVEGFSVFKDSKS  AASVNEENHP ENDPSEEKKEFYRKLERDALFRKKY
Sbjct: 61  RKRKAATAESVEGFSVFKDSKSTPAASVNEENHPSENDPSEEKKEFYRKLERDALFRKKY 120

Query: 121 NIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
           NIHVSGNNVPSPLQNF ELSTR++CDSYL+ NLVELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 NIHVSGNNVPSPLQNFGELSTRYDCDSYLLNNLVELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGSGKTLAFVCPMLMKLKQPSKEAIRAVILCPTRELASQTTRECKKLAKGTKFRIKM 240
           CAPTGSGKTLAFVCPMLMKLK P KE IRAVILCPTRELASQTTRECKKLAKG KFRIKM
Sbjct: 181 CAPTGSGKTLAFVCPMLMKLKDPLKEGIRAVILCPTRELASQTTRECKKLAKGKKFRIKM 240

Query: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELGLLKQI 300
           VTKEV+RHADFSKFSCDVLISTPLRLRLAIRKKK+DLSRVEYLVLDESDKLFELGLLKQI
Sbjct: 241 VTKEVVRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEYLVLDESDKLFELGLLKQI 300

Query: 301 DSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360
           D+IVKACSNPSI+RSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTA+ETVKQKLVFAGS
Sbjct: 301 DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTAAETVKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLSQIERENAV 420
           EEGKLLAL QSFSESLNPPVLIFVQSKERAKELYGEL FENIRV+VIHSDLSQ+EREN V
Sbjct: 361 EEGKLLALCQSFSESLNPPVLIFVQSKERAKELYGELTFENIRVSVIHSDLSQLERENVV 420

Query: 421 DDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF 480
           DDFRAGK+WVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF
Sbjct: 421 DDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF 480

Query: 481 YTEDDIPFLRNIANVMAASGCEVPSWISELRKKRWKKHRPKRDSISTKPKDDDEA 536
           YT++DIPFLRNIANVM+ASGCEVPSWI+ELRK +WKKHRPKRDSISTKP DD +A
Sbjct: 481 YTDEDIPFLRNIANVMSASGCEVPSWITELRKMKWKKHRPKRDSISTKPNDDGDA 535

[Close]

BLAST of MS027708.1 vs. NCBI nr
Match: XP_023540379.1 (DEAD-box ATP-dependent RNA helicase 57 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 953.4 bits (2463), Expect = 8.5e-274
Identity = 484/534 (90.64%), Postives = 511/534 (95.69%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADISRFEGKRGSENVAEGLSSIGNGDFEVNGGSTPSEKRK 60
           MEKGASFLFAGIHFDKKRFAAD SRFEGK+ S+N  EGLSSI N DFEV   STPSEKRK
Sbjct: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDNGIEGLSSIANSDFEVIEDSTPSEKRK 60

Query: 61  RKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPSEEKKEFYRKLERDALFRKKY 120
           RKRKSAATESVEGFSVFKDSK   AASVNEENHP ENDPSEE+KEF+RKLERDALFRKKY
Sbjct: 61  RKRKSAATESVEGFSVFKDSKLTVAASVNEENHPSENDPSEERKEFHRKLERDALFRKKY 120

Query: 121 NIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
           NIHVSGNNVPSPLQNFAELSTR+ECD Y++ NLVELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 NIHVSGNNVPSPLQNFAELSTRYECDPYILHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGSGKTLAFVCPMLMKLKQPSKEAIRAVILCPTRELASQTTRECKKLAKGTKFRIKM 240
           CAPTGSGKTLAF+CP+LMKLK PSKE IRAVILCPTRELASQTTRECKKLAKG KF IK+
Sbjct: 181 CAPTGSGKTLAFLCPVLMKLKDPSKEGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL 240

Query: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELGLLKQI 300
           VTKEV+RHADFSKFSCDVLISTPLRLRLAIRKKK+DLSRVE+LVLDESDKLFELGLLKQI
Sbjct: 241 VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQI 300

Query: 301 DSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360
           D+IVKACSNPSI+RSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS
Sbjct: 301 DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLSQIERENAV 420
           EEGKLLALRQSFSESLNPPVLIFVQSKERAK+LYGELAFENI+VNVIHSDLS+IEREN V
Sbjct: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV 420

Query: 421 DDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF 480
            DFRAGK+WVLIATDVIARGMDFKGVNCVINYDFPDSA+AYIHRIGRSGRAGRSGEAITF
Sbjct: 421 YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIGRSGRAGRSGEAITF 480

Query: 481 YTEDDIPFLRNIANVMAASGCEVPSWISELRKKRWKKHRPKRDSISTKPKDDDE 535
           YT++DIPFLRNIANVM+ASGCEVPSWI+EL+KK+WKKHRPKRDSIS KPKDD +
Sbjct: 481 YTDEDIPFLRNIANVMSASGCEVPSWITELQKKKWKKHRPKRDSISNKPKDDGD 534

[Close]

BLAST of MS027708.1 vs. NCBI nr
Match: XP_023005802.1 (DEAD-box ATP-dependent RNA helicase 57 [Cucurbita maxima])

HSP 1 Score: 951.0 bits (2457), Expect = 4.2e-273
Identity = 482/534 (90.26%), Postives = 511/534 (95.69%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADISRFEGKRGSENVAEGLSSIGNGDFEVNGGSTPSEKRK 60
           MEKGASFLFAGIHFDKKRFAAD SRFEGK+ S+N  EGLSSI N DFEV   STPSEKRK
Sbjct: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDNGIEGLSSIANSDFEVIEDSTPSEKRK 60

Query: 61  RKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPSEEKKEFYRKLERDALFRKKY 120
           RKRKSAATESVEGFSVF+DSK   AASVNEENHP ENDPSEE+KEF+RKLERDAL+RKKY
Sbjct: 61  RKRKSAATESVEGFSVFRDSKLTVAASVNEENHPSENDPSEERKEFHRKLERDALYRKKY 120

Query: 121 NIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
           NIHVSGNNVPSPLQNFAELSTR+ECD Y++ NLVELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 NIHVSGNNVPSPLQNFAELSTRYECDPYILHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGSGKTLAFVCPMLMKLKQPSKEAIRAVILCPTRELASQTTRECKKLAKGTKFRIKM 240
           CAPTGSGKTLAF+CP+LMKLK PSKE IRAVILCPTRELASQTTRECKKLAKG KF IK+
Sbjct: 181 CAPTGSGKTLAFLCPVLMKLKDPSKEGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL 240

Query: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELGLLKQI 300
           VTKEV+RHADFSKFSCDVLISTPLRLRLAIRKKK+DLSRVE+LVLDESDKLFELGLLKQI
Sbjct: 241 VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQI 300

Query: 301 DSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360
           D+IVKACSNPSI+RSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS
Sbjct: 301 DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLSQIERENAV 420
           EEGKLLALRQSFSESLNPPVLIFVQSKERAK+LYGELAFENI+VNVIHSDLS+IEREN V
Sbjct: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV 420

Query: 421 DDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF 480
            DFRAGK+WVLIATDVIARGMDFKGVNCVINYDFPDSA+AYIHRIGRSGRAGRSGEAITF
Sbjct: 421 YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIGRSGRAGRSGEAITF 480

Query: 481 YTEDDIPFLRNIANVMAASGCEVPSWISELRKKRWKKHRPKRDSISTKPKDDDE 535
           YT++DIPFLRNIANVM+ASGCEVPSWI+EL+KK+WKKHRPKRDSIS KPKDD +
Sbjct: 481 YTDEDIPFLRNIANVMSASGCEVPSWITELQKKKWKKHRPKRDSISNKPKDDGD 534

[Close]

BLAST of MS027708.1 vs. NCBI nr
Match: XP_004137811.1 (DEAD-box ATP-dependent RNA helicase 57 [Cucumis sativus] >XP_011651949.1 DEAD-box ATP-dependent RNA helicase 57 [Cucumis sativus] >KGN58945.1 hypothetical protein Csa_001839 [Cucumis sativus])

HSP 1 Score: 948.3 bits (2450), Expect = 2.7e-272
Identity = 479/534 (89.70%), Postives = 508/534 (95.13%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADISRFEGKRGSENVAEGLSSIGNGDFEVNGGSTPSEKRK 60
           MEKG SFLFAGIHFDKKRFAAD ++FEGK+ S+NV EG SSI NGD EV+ GSTPS+KRK
Sbjct: 1   MEKGTSFLFAGIHFDKKRFAADFAKFEGKKESDNVVEGPSSIDNGDLEVHEGSTPSDKRK 60

Query: 61  RKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPSEEKKEFYRKLERDALFRKKY 120
           RKRKSA  +SVEGFSVFKDSKS A  S+NEENH  ENDPSEEKKEFYRKLERDALFRKKY
Sbjct: 61  RKRKSATAKSVEGFSVFKDSKSTADTSLNEENHLSENDPSEEKKEFYRKLERDALFRKKY 120

Query: 121 NIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
           NIHVSGNNVPSPLQNF ELSTR++CDSYL+ NLVELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 NIHVSGNNVPSPLQNFGELSTRYDCDSYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGSGKTLAFVCPMLMKLKQPSKEAIRAVILCPTRELASQTTRECKKLAKGTKFRIKM 240
           CAPTGSGKTLAFVCPMLM+LK PSKE IRAVILCPTRELASQT RECKKLAKG KF IK+
Sbjct: 181 CAPTGSGKTLAFVCPMLMRLKDPSKEGIRAVILCPTRELASQTIRECKKLAKGKKFHIKL 240

Query: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELGLLKQI 300
           VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKK+DLSRVEYLVLDESDKLFELGL+KQI
Sbjct: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEYLVLDESDKLFELGLIKQI 300

Query: 301 DSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360
           D++VKACSNPSI+RSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS
Sbjct: 301 DAVVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLSQIERENAV 420
           EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRV+VIHSDLSQ+EREN V
Sbjct: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVSVIHSDLSQLERENVV 420

Query: 421 DDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF 480
           DDFRAGK+WVLIATDVI+RGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF
Sbjct: 421 DDFRAGKTWVLIATDVISRGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF 480

Query: 481 YTEDDIPFLRNIANVMAASGCEVPSWISELRKKRWKKHRPKRDSISTKPKDDDE 535
           YT++DIPFLRNIANVM+ASGCEVPSWI+ELRK +WKKHRPKRDSISTKP +D +
Sbjct: 481 YTDEDIPFLRNIANVMSASGCEVPSWITELRKMKWKKHRPKRDSISTKPHEDGD 534

[Close]

BLAST of MS027708.1 vs. ExPASy Swiss-Prot
Match: Q84TG1 (DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana OX=3702 GN=RH57 PE=2 SV=1)

HSP 1 Score: 731.9 bits (1888), Expect = 5.3e-210
Identity = 374/535 (69.91%), Postives = 436/535 (81.50%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADISRFEGKRGSENVAEGLSSIGNGDFEVNGGSTPS---E 60
           MEK + FLF G +F+KK+FA D ++F+     ++  + ++     + +            
Sbjct: 1   MEKSSYFLFGGTNFNKKKFAPDFAKFKNSTEDDDSNKKVNFFVEEEEDTEQPEAEKVIVS 60

Query: 61  KRKRKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPSEEKKEFYRKLERDALFR 120
            +KRKR+S+ +  VEGF VFK SK   A    EE           KKE  R++ERDAL R
Sbjct: 61  SKKRKRRSSNSVPVEGFDVFKSSKKARAKGKAEEQITKNEIVENPKKELNRQMERDALSR 120

Query: 121 KKYNIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRE 180
           K+Y+IHVSGNN+P PL++FAELS+R+ C+ Y++RNL ELGFKEPTPIQRQAIP+LLSGRE
Sbjct: 121 KQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRE 180

Query: 181 CFACAPTGSGKTLAFVCPMLMKLKQPSKEAIRAVILCPTRELASQTTRECKKLAKGTKFR 240
           CFACAPTGSGKT AF+CPML+KLK+PS + IRAVIL P RELA+QT RE KKL KG+ F 
Sbjct: 181 CFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQTAREGKKLIKGSNFH 240

Query: 241 IKMVTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELGLL 300
           I+++TK +++ ADFSK  CDVLISTP+RL+ AI+ KK+DLS+VEYLVLDESDKLFE  LL
Sbjct: 241 IRLMTKPLVKTADFSKLWCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLL 300

Query: 301 KQIDSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVF 360
           KQID +VKACSNPSIIRSLFSATLPD VE+LARS+MHDAVRVI+GRKNTASETVKQKLVF
Sbjct: 301 KQIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVF 360

Query: 361 AGSEEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLSQIERE 420
           AGSEEGKLLALRQSF+ESLNPPVLIFVQSKERAKELY EL  ENIR  VIHSDL   ERE
Sbjct: 361 AGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERE 420

Query: 421 NAVDDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEA 480
           NAVD FRAG+ WVLIATDVIARGMDFKG+NCVINYDFPDSA+AYIHRIGRSGRAGRSGEA
Sbjct: 421 NAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEA 480

Query: 481 ITFYTEDDIPFLRNIANVMAASGCEVPSWISELRKKRWKKHRPKRDSISTKPKDD 533
           ITFYTE D+PFLRNIAN M +SGCEVPSWI  L+KK+W+KHRP+RDSISTKPK D
Sbjct: 481 ITFYTEQDVPFLRNIANTMMSSGCEVPSWIMSLKKKKWRKHRPRRDSISTKPKAD 535

[Close]

BLAST of MS027708.1 vs. ExPASy Swiss-Prot
Match: Q5K5B6 (DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0647900 PE=2 SV=2)

HSP 1 Score: 680.2 bits (1754), Expect = 1.8e-194
Identity = 352/540 (65.19%), Postives = 436/540 (80.74%), Query Frame = 0


Query: 1   MEKG--ASFLFAGIHFDKKRFAADISRFEGKRGSENVAEGL--SSIGNGDFEVNGGSTPS 60
           MEK   +S LFAG HFD+KRFA D +RF     + +VA     S       +    +  S
Sbjct: 1   MEKAKLSSALFAGTHFDRKRFAGDFARFRQGPPAPDVASAAAPSPEKKRKRQSKAKAKKS 60

Query: 61  EKRKRKRKSAATESVEGFSVFKDSKSKAAASVNEE----NHPPENDPSEEKKEFYRKLER 120
           +KR+ +   +A+++VEGFSVFK   +K     +E+        +++    +KE  R++ER
Sbjct: 61  KKRRAEGADSASDAVEGFSVFKGLAAKKDEDDSEKKVETGKSEDSEVVRRRKEVEREIER 120

Query: 121 DALFRKKYNIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVL 180
            A+ RKK++IH+SG NVP+PL+NF EL +R+ CDSYL+ NL +LGF+EPTPIQRQAIP+L
Sbjct: 121 AAILRKKFDIHISGQNVPAPLENFEELVSRYGCDSYLVGNLSKLGFQEPTPIQRQAIPIL 180

Query: 181 LSGRECFACAPTGSGKTLAFVCPMLMKLKQPSKEAIRAVILCPTRELASQTTRECKKLAK 240
           LSGRECFACAPTGSGKTLAF+ P+LMK+K  SKE ++AVILCPTRELA+QTTRECKKLAK
Sbjct: 181 LSGRECFACAPTGSGKTLAFLFPILMKIKPGSKEGVKAVILCPTRELAAQTTRECKKLAK 240

Query: 241 GTKFRIKMVTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLF 300
           G KF IK++TK++ +  +F    CD+LISTPLRL  A++K+ +DLSRVEYLVLDESDKLF
Sbjct: 241 GRKFYIKLMTKDLSKSGNFKDMHCDILISTPLRLDHAVQKRDLDLSRVEYLVLDESDKLF 300

Query: 301 ELGLLKQIDSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVK 360
           ELG ++ IDS+VKACSNPSIIRSLFSATLPD +E LAR++MHDAVRVIVGRKN+AS  +K
Sbjct: 301 ELGFVEVIDSVVKACSNPSIIRSLFSATLPDSIETLARTIMHDAVRVIVGRKNSASSLIK 360

Query: 361 QKLVFAGSEEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLS 420
           QKL+FAG+E+GKLLALRQSF+ESLNPPVLIFVQSKERAKELY ELAF+++R +VIH+DL 
Sbjct: 361 QKLIFAGTEKGKLLALRQSFAESLNPPVLIFVQSKERAKELYKELAFDDVRADVIHADLD 420

Query: 421 QIERENAVDDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAG 480
           + +R++AVD+ RAGK+WVLIAT+VIARGMDFKGVNCVINYDFP+SA+AYIHRIGRSGRAG
Sbjct: 421 EEQRQDAVDNLRAGKTWVLIATEVIARGMDFKGVNCVINYDFPESASAYIHRIGRSGRAG 480

Query: 481 RSGEAITFYTEDDIPFLRNIANVMAASGCEVPSWISELRKKRWKKHRPKRDSISTKPKDD 533
           RSGEAITF+TE+D PFLRNIANV+ +SGCEVPSWI  L K + KKHR  RD IST P +D
Sbjct: 481 RSGEAITFFTEEDKPFLRNIANVLISSGCEVPSWIKALPKLKRKKHRVNRDPISTLPDED 540

[Close]

BLAST of MS027708.1 vs. ExPASy Swiss-Prot
Match: Q99PT0 (Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus OX=10116 GN=Ddx52 PE=2 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 5.1e-120
Identity = 256/564 (45.39%), Postives = 352/564 (62.41%), Query Frame = 0


Query: 8   LFAGIHFDKKRFAADISRFE-GKR----GSENVAEGLSSIGN------------------ 67
           L AG  FD KRF+AD +RF+ GKR     S    +GL   GN                  
Sbjct: 10  LGAGAKFDVKRFSADATRFQVGKRKFGSDSSETVKGLDFFGNKKSVSDECGGLQTQQELQ 69

Query: 68  GDFEVNGG----STPSEKRKRKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPS 127
            +    GG    S   +K+KRK+ +A   + E         S   A + ++    E   +
Sbjct: 70  NEETTEGGLLERSKEPKKKKRKKMTADVPAQEDLDGTIQWTSSVEAKLQDKKANGEKKLT 129

Query: 128 EEKKEFYRKLERDALFRKKYNIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKE 187
            EK E  RK E+   FR K+ IHV G ++P P+  F +L   ++    L++N+++ GF+ 
Sbjct: 130 SEKLEHLRK-EKINFFRNKHKIHVQGTDLPDPIATFQQLDQEYKISPRLLQNILDAGFQV 189

Query: 188 PTPIQRQAIPVLLSGRECFACAPTGSGKTLAFVCPMLMKLKQPSKEAIRAVILCPTRELA 247
           PTPIQ QAIPV+L GRE  A APTGSGKTLAF  P+LM+LKQP+ +  RA+++ PTRELA
Sbjct: 190 PTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELA 249

Query: 248 SQTTRECKKLAKGTKFRIKMVTKEVLRHADF---SKFSCDVLISTPLRLRLAIRKKK--V 307
           SQ  RE  K+++GT FRI M+ K  +    F   S    D+L++TP RL   ++++   +
Sbjct: 250 SQIHRELIKISEGTGFRIHMIHKAAIAAKKFGPKSSKKFDILVTTPNRLIYLLKQEPPGI 309

Query: 308 DLSRVEYLVLDESDKLFE---LGLLKQIDSIVKACSNPSIIRSLFSATLPDFVEDLARSV 367
           DL+ VE+LV+DESDKLFE    G   Q+ SI  AC++P + R++FSAT    VE   +  
Sbjct: 310 DLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSPKVRRAMFSATFAYDVEQWCKLN 369

Query: 368 MHDAVRVIVGRKNTASETVKQKLVFAGSEEGKLLALRQSFSESLNPPVLIFVQSKERAKE 427
           + + V V +G +N+A ETV+Q+L+F GSE GKLLA+R+   +  NPPVL+FVQS ERAKE
Sbjct: 370 LDNIVSVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFVQSIERAKE 429

Query: 428 LYGELAFENIRVNVIHSDLSQIERENAVDDFRAGKSWVLIATDVIARGMDFKGVNCVINY 487
           L+ EL +E I V+VIH++ +Q +R+N V  FRAGK WVLI T ++ARG+DFKGVN VINY
Sbjct: 430 LFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINY 489

Query: 488 DFPDSAAAYIHRIGRSGRAGRSGEAITFYTEDDIPFLRNIANVMAASGCEVPSWIS---- 531
           DFP S+  YIHRIGR+GRAG  G+A+TF+TEDD P LR++ANV+  +GC VP +I     
Sbjct: 490 DFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQK 549

[Close]

BLAST of MS027708.1 vs. ExPASy Swiss-Prot
Match: Q8K301 (Probable ATP-dependent RNA helicase DDX52 OS=Mus musculus OX=10090 GN=Ddx52 PE=2 SV=2)

HSP 1 Score: 429.9 bits (1104), Expect = 4.3e-119
Identity = 255/564 (45.21%), Postives = 354/564 (62.77%), Query Frame = 0


Query: 8   LFAGIHFDKKRFAADISRFE-GKR----GSENVAEGLSSIGN--------GDFEVN---- 67
           L AG  FD KRF+AD +RF+ GKR     S  V +GL   GN        G  +++    
Sbjct: 10  LGAGAKFDVKRFSADATRFQVGKRKFDSESLEVLKGLDFFGNKKSVSDECGALQIHQEPP 69

Query: 68  ----------GGSTPSEKRKRKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPS 127
                       S   +K+KRK+ ++   + E F       S   A + +E    E   +
Sbjct: 70  NEEKTQGVLLERSKEPKKKKRKKMTSEVPAQEDFDGGIQWTSSVEAKLQDEKVSGEKKLT 129

Query: 128 EEKKEFYRKLERDALFRKKYNIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKE 187
             K E  RK E+   FR K+ IHV G ++P P+  F +L   ++ +S L++N+++ GF+ 
Sbjct: 130 SGKLEHLRK-EKVNFFRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQV 189

Query: 188 PTPIQRQAIPVLLSGRECFACAPTGSGKTLAFVCPMLMKLKQPSKEAIRAVILCPTRELA 247
           PTPIQ QAIPV+L GRE  A APTGSGKTLAF  P+LM+LKQP+ +  RA+++ PTRELA
Sbjct: 190 PTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPTNKGFRALVISPTRELA 249

Query: 248 SQTTRECKKLAKGTKFRIKMVTKEVLRHADF---SKFSCDVLISTPLRLRLAIRKKK--V 307
           SQ  RE  K+++GT FRI M+ K  +    F   S    D+L++TP RL   +++    +
Sbjct: 250 SQIHRELIKISEGTGFRIHMIHKAAIAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGI 309

Query: 308 DLSRVEYLVLDESDKLFE---LGLLKQIDSIVKACSNPSIIRSLFSATLPDFVEDLARSV 367
           DL+ VE+LV+DESDKLFE    G  +Q+ SI  AC++P + R++FSAT    VE   +  
Sbjct: 310 DLTNVEWLVVDESDKLFEDGKTGFREQLASIFLACTSPKVRRAMFSATFAYDVEQWCKLN 369

Query: 368 MHDAVRVIVGRKNTASETVKQKLVFAGSEEGKLLALRQSFSESLNPPVLIFVQSKERAKE 427
           + + V V +G +N+A ETV+Q+L+F GSE GKLLA+R+   +   PPVL+FVQS ERAKE
Sbjct: 370 LDNVVSVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFKPPVLVFVQSIERAKE 429

Query: 428 LYGELAFENIRVNVIHSDLSQIERENAVDDFRAGKSWVLIATDVIARGMDFKGVNCVINY 487
           L+ EL +E I V+VIH++ +Q +R+N V  FRAGK WVLI T ++ARG+DFKGVN VINY
Sbjct: 430 LFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINY 489

Query: 488 DFPDSAAAYIHRIGRSGRAGRSGEAITFYTEDDIPFLRNIANVMAASGCEVPSWIS---- 531
           DFP S+  YIHRIGR+GRAG  G+A+TF+TEDD P LR++ANV+  +GC VP +I     
Sbjct: 490 DFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQK 549

[Close]

BLAST of MS027708.1 vs. ExPASy Swiss-Prot
Match: A5D7C1 (Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus OX=9913 GN=DDX52 PE=2 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 5.6e-119
Identity = 260/562 (46.26%), Postives = 352/562 (62.63%), Query Frame = 0


Query: 8   LFAGIHFDKKRFAADISRFE-GKR----GSENVAEGLSSIGN-----GDF---------- 67
           L  G  FD +RF+AD +RF+ GKR     S  V +GL   GN     GD           
Sbjct: 10  LGVGAKFDLRRFSADAARFQIGKRKYDFDSSEVLQGLDFFGNKKPVPGDCGALRTHQELP 69

Query: 68  ---EVNGGSTPSEKRKRKRKSAATE--SVEGFSVFKDSKSKAAASVNEENHPPENDPSEE 127
              +        +K+ RK+K   +E  S E  S  +   S   A + ++N   +N  +  
Sbjct: 70  DEEKTEESQIERKKQNRKKKKITSEITSEEEVSTIQ-WISSVEAKIEDKNVKRKNKLTSG 129

Query: 128 KKEFYRKLERDALFRKKYNIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPT 187
           K E  RK E+   FR K+ IHV G ++P P+  F +L   ++ +S L++N+++ GF+ PT
Sbjct: 130 KLEQLRK-EKLNFFRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQTPT 189

Query: 188 PIQRQAIPVLLSGRECFACAPTGSGKTLAFVCPMLMKLKQPSKEAIRAVILCPTRELASQ 247
           PIQ QAIPV+L GRE  A APTGSGKTLAF  P+LM LKQP+ +  RA+I+ PTRELASQ
Sbjct: 190 PIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMHLKQPTNKGFRALIISPTRELASQ 249

Query: 248 TTRECKKLAKGTKFRIKMVTKEVLRHADF---SKFSCDVLISTPLRLRLAIRKKK--VDL 307
             RE  KL++GT FRI M+ K  +    F   S    D+L++TP RL   +++    +DL
Sbjct: 250 IHRELVKLSEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 309

Query: 308 SRVEYLVLDESDKLFE---LGLLKQIDSIVKACSNPSIIRSLFSATLPDFVEDLARSVMH 367
           + VE+LV+DESDKLFE    G   Q+ SI  AC++  + R++FSAT    VE   R  + 
Sbjct: 310 TSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVKRAMFSATFAYDVEQWCRLNLD 369

Query: 368 DAVRVIVGRKNTASETVKQKLVFAGSEEGKLLALRQSFSESLNPPVLIFVQSKERAKELY 427
             + V VG +N+A ETV+Q+L+F GSE GKLLA+R+   +  NPPVL+FVQS ERAKEL+
Sbjct: 370 SVITVSVGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNPPVLVFVQSIERAKELF 429

Query: 428 GELAFENIRVNVIHSDLSQIERENAVDDFRAGKSWVLIATDVIARGMDFKGVNCVINYDF 487
            EL +E I V+VIH+D +Q +R+N V  FRAGK WVLI T ++ARG+DFKGVN VINYDF
Sbjct: 430 HELIYEGINVDVIHADRTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLVINYDF 489

Query: 488 PDSAAAYIHRIGRSGRAGRSGEAITFYTEDDIPFLRNIANVMAASGCEVPSWIS------ 531
           P S+  YIHRIGR+GRAG  G+A+TF+TEDD P LR++ANV+  +GC VP +I       
Sbjct: 490 PTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIKGFQKLL 549

[Close]

BLAST of MS027708.1 vs. ExPASy TrEMBL
Match: A0A6J1CWS9 (DEAD-box ATP-dependent RNA helicase 57 OS=Momordica charantia OX=3673 GN=LOC111015125 PE=4 SV=1)

HSP 1 Score: 1030.4 bits (2663), Expect = 2.7e-297
Identity = 529/535 (98.88%), Postives = 531/535 (99.25%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADISRFEGKRGSENVAEGLSSIGNGDFEVNGGSTPSEKRK 60
           MEKGASFLFAGIHFDKKRFAAD SRFEGKRGSENVAEGLSSIGNGDFEVNGGSTPSEKRK
Sbjct: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKRGSENVAEGLSSIGNGDFEVNGGSTPSEKRK 60

Query: 61  RKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPSEEKKEFYRKLERDALFRKKY 120
           RKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPSEEKKEFYRKLERDALFRKKY
Sbjct: 61  RKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPSEEKKEFYRKLERDALFRKKY 120

Query: 121 NIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
           NIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 NIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGSGKTLAFVCPMLMKLKQPSKEAIRAVILCPTRELASQTTRECKKLAKGTKFRIKM 240
           CAPTGSGKTLAFVCPMLMKLKQPSKEAIRA ILCPT+ELASQTTRECK+LAKG KFRIKM
Sbjct: 181 CAPTGSGKTLAFVCPMLMKLKQPSKEAIRAAILCPTQELASQTTRECKRLAKGKKFRIKM 240

Query: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELGLLKQI 300
           VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELGLLKQI
Sbjct: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELGLLKQI 300

Query: 301 DSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360
           DSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS
Sbjct: 301 DSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLSQIERENAV 420
           EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLSQIERENAV
Sbjct: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLSQIERENAV 420

Query: 421 DDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF 480
           DDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF
Sbjct: 421 DDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF 480

Query: 481 YTEDDIPFLRNIANVMAASGCEVPSWISELRKKRWKKHRPKRDSISTKPKDDDEA 536
           YTEDDIPFLRNIANVMAASGCEVPSWIS LRKKRWKKHRPKRDSISTKPKDDDEA
Sbjct: 481 YTEDDIPFLRNIANVMAASGCEVPSWISRLRKKRWKKHRPKRDSISTKPKDDDEA 535

[Close]

BLAST of MS027708.1 vs. ExPASy TrEMBL
Match: A0A6J1KU60 (DEAD-box ATP-dependent RNA helicase 57 OS=Cucurbita maxima OX=3661 GN=LOC111498695 PE=4 SV=1)

HSP 1 Score: 951.0 bits (2457), Expect = 2.1e-273
Identity = 482/534 (90.26%), Postives = 511/534 (95.69%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADISRFEGKRGSENVAEGLSSIGNGDFEVNGGSTPSEKRK 60
           MEKGASFLFAGIHFDKKRFAAD SRFEGK+ S+N  EGLSSI N DFEV   STPSEKRK
Sbjct: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDNGIEGLSSIANSDFEVIEDSTPSEKRK 60

Query: 61  RKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPSEEKKEFYRKLERDALFRKKY 120
           RKRKSAATESVEGFSVF+DSK   AASVNEENHP ENDPSEE+KEF+RKLERDAL+RKKY
Sbjct: 61  RKRKSAATESVEGFSVFRDSKLTVAASVNEENHPSENDPSEERKEFHRKLERDALYRKKY 120

Query: 121 NIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
           NIHVSGNNVPSPLQNFAELSTR+ECD Y++ NLVELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 NIHVSGNNVPSPLQNFAELSTRYECDPYILHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGSGKTLAFVCPMLMKLKQPSKEAIRAVILCPTRELASQTTRECKKLAKGTKFRIKM 240
           CAPTGSGKTLAF+CP+LMKLK PSKE IRAVILCPTRELASQTTRECKKLAKG KF IK+
Sbjct: 181 CAPTGSGKTLAFLCPVLMKLKDPSKEGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL 240

Query: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELGLLKQI 300
           VTKEV+RHADFSKFSCDVLISTPLRLRLAIRKKK+DLSRVE+LVLDESDKLFELGLLKQI
Sbjct: 241 VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEHLVLDESDKLFELGLLKQI 300

Query: 301 DSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360
           D+IVKACSNPSI+RSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS
Sbjct: 301 DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLSQIERENAV 420
           EEGKLLALRQSFSESLNPPVLIFVQSKERAK+LYGELAFENI+VNVIHSDLS+IEREN V
Sbjct: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV 420

Query: 421 DDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF 480
            DFRAGK+WVLIATDVIARGMDFKGVNCVINYDFPDSA+AYIHRIGRSGRAGRSGEAITF
Sbjct: 421 YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIGRSGRAGRSGEAITF 480

Query: 481 YTEDDIPFLRNIANVMAASGCEVPSWISELRKKRWKKHRPKRDSISTKPKDDDE 535
           YT++DIPFLRNIANVM+ASGCEVPSWI+EL+KK+WKKHRPKRDSIS KPKDD +
Sbjct: 481 YTDEDIPFLRNIANVMSASGCEVPSWITELQKKKWKKHRPKRDSISNKPKDDGD 534

[Close]

BLAST of MS027708.1 vs. ExPASy TrEMBL
Match: A0A0A0LAD5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736920 PE=4 SV=1)

HSP 1 Score: 948.3 bits (2450), Expect = 1.3e-272
Identity = 479/534 (89.70%), Postives = 508/534 (95.13%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADISRFEGKRGSENVAEGLSSIGNGDFEVNGGSTPSEKRK 60
           MEKG SFLFAGIHFDKKRFAAD ++FEGK+ S+NV EG SSI NGD EV+ GSTPS+KRK
Sbjct: 1   MEKGTSFLFAGIHFDKKRFAADFAKFEGKKESDNVVEGPSSIDNGDLEVHEGSTPSDKRK 60

Query: 61  RKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPSEEKKEFYRKLERDALFRKKY 120
           RKRKSA  +SVEGFSVFKDSKS A  S+NEENH  ENDPSEEKKEFYRKLERDALFRKKY
Sbjct: 61  RKRKSATAKSVEGFSVFKDSKSTADTSLNEENHLSENDPSEEKKEFYRKLERDALFRKKY 120

Query: 121 NIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
           NIHVSGNNVPSPLQNF ELSTR++CDSYL+ NLVELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 NIHVSGNNVPSPLQNFGELSTRYDCDSYLLHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGSGKTLAFVCPMLMKLKQPSKEAIRAVILCPTRELASQTTRECKKLAKGTKFRIKM 240
           CAPTGSGKTLAFVCPMLM+LK PSKE IRAVILCPTRELASQT RECKKLAKG KF IK+
Sbjct: 181 CAPTGSGKTLAFVCPMLMRLKDPSKEGIRAVILCPTRELASQTIRECKKLAKGKKFHIKL 240

Query: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELGLLKQI 300
           VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKK+DLSRVEYLVLDESDKLFELGL+KQI
Sbjct: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEYLVLDESDKLFELGLIKQI 300

Query: 301 DSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360
           D++VKACSNPSI+RSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS
Sbjct: 301 DAVVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLSQIERENAV 420
           EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRV+VIHSDLSQ+EREN V
Sbjct: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVSVIHSDLSQLERENVV 420

Query: 421 DDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF 480
           DDFRAGK+WVLIATDVI+RGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF
Sbjct: 421 DDFRAGKTWVLIATDVISRGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF 480

Query: 481 YTEDDIPFLRNIANVMAASGCEVPSWISELRKKRWKKHRPKRDSISTKPKDDDE 535
           YT++DIPFLRNIANVM+ASGCEVPSWI+ELRK +WKKHRPKRDSISTKP +D +
Sbjct: 481 YTDEDIPFLRNIANVMSASGCEVPSWITELRKMKWKKHRPKRDSISTKPHEDGD 534

[Close]

BLAST of MS027708.1 vs. ExPASy TrEMBL
Match: A0A6J1G4H0 (DEAD-box ATP-dependent RNA helicase 57 OS=Cucurbita moschata OX=3662 GN=LOC111450647 PE=4 SV=1)

HSP 1 Score: 947.6 bits (2448), Expect = 2.3e-272
Identity = 481/534 (90.07%), Postives = 510/534 (95.51%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADISRFEGKRGSENVAEGLSSIGNGDFEVNGGSTPSEKRK 60
           MEKGASFLFAGIHFDKKRFAAD SRFEGK+ S++V EGLS+I N DFEV   ST SEKRK
Sbjct: 1   MEKGASFLFAGIHFDKKRFAADFSRFEGKKESDDVIEGLSNIANSDFEVIEDSTHSEKRK 60

Query: 61  RKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPSEEKKEFYRKLERDALFRKKY 120
           RKRKSAATESVEGFSVFKDSK   AASVNEENHP ENDPSEE+KEF+RKLERDALFRKKY
Sbjct: 61  RKRKSAATESVEGFSVFKDSKLTVAASVNEENHPSENDPSEERKEFHRKLERDALFRKKY 120

Query: 121 NIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
           NIHVSGNNVPSPLQNFAELSTR+ECD Y++ NLVELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 NIHVSGNNVPSPLQNFAELSTRYECDPYILHNLVELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGSGKTLAFVCPMLMKLKQPSKEAIRAVILCPTRELASQTTRECKKLAKGTKFRIKM 240
           CAPTGSGKTLAF+CP+LMKLK PSKE IRAVILCPTRELASQTTRECKKLAKG KF IK+
Sbjct: 181 CAPTGSGKTLAFLCPVLMKLKDPSKEGIRAVILCPTRELASQTTRECKKLAKGKKFSIKL 240

Query: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELGLLKQI 300
           VTKEV+RHADFSKFSCDVLISTPLRLRLAIRKKK+DL RVE+LVLDESDKLFELGLLKQI
Sbjct: 241 VTKEVIRHADFSKFSCDVLISTPLRLRLAIRKKKIDLCRVEHLVLDESDKLFELGLLKQI 300

Query: 301 DSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360
           D+IVKACSNPSI+RSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS
Sbjct: 301 DTIVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLSQIERENAV 420
           EEGKLLALRQSFSESLNPPVLIFVQSKERAK+LYGELAFENI+VNVIHSDLS+IEREN V
Sbjct: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKDLYGELAFENIKVNVIHSDLSEIERENVV 420

Query: 421 DDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF 480
            DFRAGK+WVLIATDVIARGMDFKGVNCVINYDFPDSA+AYIHRIGRSGRAGRSGEAITF
Sbjct: 421 YDFRAGKTWVLIATDVIARGMDFKGVNCVINYDFPDSASAYIHRIGRSGRAGRSGEAITF 480

Query: 481 YTEDDIPFLRNIANVMAASGCEVPSWISELRKKRWKKHRPKRDSISTKPKDDDE 535
           YT++DIPFLRNIANVM+ASGCEVPSWI+EL+KK+WKKHRPKRDSIS KPKDD +
Sbjct: 481 YTDEDIPFLRNIANVMSASGCEVPSWITELQKKKWKKHRPKRDSISNKPKDDGD 534

[Close]

BLAST of MS027708.1 vs. ExPASy TrEMBL
Match: A0A1S3B6W1 (DEAD-box ATP-dependent RNA helicase 57 OS=Cucumis melo OX=3656 GN=LOC103486464 PE=4 SV=1)

HSP 1 Score: 942.2 bits (2434), Expect = 9.5e-271
Identity = 476/534 (89.14%), Postives = 506/534 (94.76%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADISRFEGKRGSENVAEGLSSIGNGDFEVNGGSTPSEKRK 60
           MEKG SFLFAGIHF+KKRFAAD +RFEGK+ S+NV EG SSIGNG  EV+ GSTPS+KRK
Sbjct: 1   MEKGTSFLFAGIHFNKKRFAADFARFEGKKESDNVVEGPSSIGNGVLEVHEGSTPSDKRK 60

Query: 61  RKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPSEEKKEFYRKLERDALFRKKY 120
           RKRKS   +SVEGFSVFKDSKS A ASVNEENH  ENDPS EKKEFYRKLERDALFRKKY
Sbjct: 61  RKRKSETAKSVEGFSVFKDSKSTADASVNEENHLSENDPSNEKKEFYRKLERDALFRKKY 120

Query: 121 NIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRECFA 180
           NIHVSGNN+ SPLQNF ELSTR++CDSYL+ NL+ELGFKEPTPIQRQAIPVLLSGRECFA
Sbjct: 121 NIHVSGNNITSPLQNFGELSTRYDCDSYLLHNLIELGFKEPTPIQRQAIPVLLSGRECFA 180

Query: 181 CAPTGSGKTLAFVCPMLMKLKQPSKEAIRAVILCPTRELASQTTRECKKLAKGTKFRIKM 240
           CAPTGSGKTLAFVCPMLM+LK PSKE IRAVILCPTRELASQTTRECKKLAKG KF IK+
Sbjct: 181 CAPTGSGKTLAFVCPMLMRLKDPSKEGIRAVILCPTRELASQTTRECKKLAKGKKFHIKL 240

Query: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELGLLKQI 300
           VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKK+DLSRVEYLVLDESDKLFELGL+KQI
Sbjct: 241 VTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKIDLSRVEYLVLDESDKLFELGLIKQI 300

Query: 301 DSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360
           D++VKACSNPSI+RSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS
Sbjct: 301 DTVVKACSNPSIVRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVFAGS 360

Query: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLSQIERENAV 420
           EEGKLLALRQSFSESLNPPVLIFVQSKERAKELY ELAFENIRV+VIHSDLSQ+EREN V
Sbjct: 361 EEGKLLALRQSFSESLNPPVLIFVQSKERAKELYAELAFENIRVSVIHSDLSQLERENVV 420

Query: 421 DDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF 480
           DDFRAGK+WVLIATDVI+RGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF
Sbjct: 421 DDFRAGKTWVLIATDVISRGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEAITF 480

Query: 481 YTEDDIPFLRNIANVMAASGCEVPSWISELRKKRWKKHRPKRDSISTKPKDDDE 535
           YT++DIPFLRNIANVM+ASGCEVPSWI+ELRK +WKKHRPKRDSISTKP +D +
Sbjct: 481 YTDEDIPFLRNIANVMSASGCEVPSWITELRKMKWKKHRPKRDSISTKPNEDGD 534

[Close]

BLAST of MS027708.1 vs. TAIR 10
Match: AT3G09720.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 731.9 bits (1888), Expect = 3.8e-211
Identity = 374/535 (69.91%), Postives = 436/535 (81.50%), Query Frame = 0


Query: 1   MEKGASFLFAGIHFDKKRFAADISRFEGKRGSENVAEGLSSIGNGDFEVNGGSTPS---E 60
           MEK + FLF G +F+KK+FA D ++F+     ++  + ++     + +            
Sbjct: 1   MEKSSYFLFGGTNFNKKKFAPDFAKFKNSTEDDDSNKKVNFFVEEEEDTEQPEAEKVIVS 60

Query: 61  KRKRKRKSAATESVEGFSVFKDSKSKAAASVNEENHPPENDPSEEKKEFYRKLERDALFR 120
            +KRKR+S+ +  VEGF VFK SK   A    EE           KKE  R++ERDAL R
Sbjct: 61  SKKRKRRSSNSVPVEGFDVFKSSKKARAKGKAEEQITKNEIVENPKKELNRQMERDALSR 120

Query: 121 KKYNIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRE 180
           K+Y+IHVSGNN+P PL++FAELS+R+ C+ Y++RNL ELGFKEPTPIQRQAIP+LLSGRE
Sbjct: 121 KQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGRE 180

Query: 181 CFACAPTGSGKTLAFVCPMLMKLKQPSKEAIRAVILCPTRELASQTTRECKKLAKGTKFR 240
           CFACAPTGSGKT AF+CPML+KLK+PS + IRAVIL P RELA+QT RE KKL KG+ F 
Sbjct: 181 CFACAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQTAREGKKLIKGSNFH 240

Query: 241 IKMVTKEVLRHADFSKFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDKLFELGLL 300
           I+++TK +++ ADFSK  CDVLISTP+RL+ AI+ KK+DLS+VEYLVLDESDKLFE  LL
Sbjct: 241 IRLMTKPLVKTADFSKLWCDVLISTPMRLKRAIKAKKIDLSKVEYLVLDESDKLFEQSLL 300

Query: 301 KQIDSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKNTASETVKQKLVF 360
           KQID +VKACSNPSIIRSLFSATLPD VE+LARS+MHDAVRVI+GRKNTASETVKQKLVF
Sbjct: 301 KQIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHDAVRVIIGRKNTASETVKQKLVF 360

Query: 361 AGSEEGKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRVNVIHSDLSQIERE 420
           AGSEEGKLLALRQSF+ESLNPPVLIFVQSKERAKELY EL  ENIR  VIHSDL   ERE
Sbjct: 361 AGSEEGKLLALRQSFAESLNPPVLIFVQSKERAKELYDELKCENIRAGVIHSDLPPGERE 420

Query: 421 NAVDDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHRIGRSGRAGRSGEA 480
           NAVD FRAG+ WVLIATDVIARGMDFKG+NCVINYDFPDSA+AYIHRIGRSGRAGRSGEA
Sbjct: 421 NAVDQFRAGEKWVLIATDVIARGMDFKGINCVINYDFPDSASAYIHRIGRSGRAGRSGEA 480

Query: 481 ITFYTEDDIPFLRNIANVMAASGCEVPSWISELRKKRWKKHRPKRDSISTKPKDD 533
           ITFYTE D+PFLRNIAN M +SGCEVPSWI  L+KK+W+KHRP+RDSISTKPK D
Sbjct: 481 ITFYTEQDVPFLRNIANTMMSSGCEVPSWIMSLKKKKWRKHRPRRDSISTKPKAD 535

[Close]

BLAST of MS027708.1 vs. TAIR 10
Match: AT2G47330.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 244.2 bits (622), Expect = 2.4e-64
Identity = 158/437 (36.16%), Postives = 234/437 (53.55%), Query Frame = 0


Query: 104 KEFYRKLE--------RDALFRKKYNIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVE 163
           K+FY +LE            +R++  I VSG +V  P++ F +        S ++  + +
Sbjct: 190 KDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCG----FSSQIMSAIKK 249

Query: 164 LGFKEPTPIQRQAIPVLLSGRECFACAPTGSGKTLAFVCPMLMK-LKQPS---KEAIRAV 223
             +++PT IQ QA+P++LSGR+    A TGSGKT AFV PM++  + QP     E    V
Sbjct: 250 QAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGV 309

Query: 224 ILCPTRELASQTTRECKKLAKGTKFRIKMVTKEVLRHADFS--KFSCDVLISTPLRLRLA 283
           I  PTRELA Q   E KK +K    R+  V   + +H  F   K  C+++++TP RL   
Sbjct: 310 ICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDM 369

Query: 284 IRKKKVDLSRVEYLVLDESDKLFELGLLKQIDSIVKACSNPSIIRSLFSATLPDFVEDLA 343
           ++ K + + R  YLVLDE+D++F+LG   Q+ SIV     P     LFSAT+P  VE LA
Sbjct: 370 LKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQI-RPDRQTLLFSATMPWKVEKLA 429

Query: 344 RSVMHDAVRVIVGRKNTASETVKQKLVFAGSEEGKLLALRQSFSESLNP-PVLIFVQSKE 403
           R ++ D +RV VG    A+E + Q +    S+  KL  L +     ++   VL+F   K 
Sbjct: 430 REILSDPIRVTVGEVGMANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGDVLVFASKKA 489

Query: 404 RAKELYGELAFENIRVNVIHSDLSQIERENAVDDFRAGKSWVLIATDVIARGMDFKGVNC 463
              E+  +L   + +V  +H D  Q  R   +  F++G   VLIATDV ARG+D K +  
Sbjct: 490 TVDEIEAQLTLNSFKVAALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKT 549

Query: 464 VINYDFPDSAAAYIHRIGRSGRAG-RSGEAITFYTEDDIPFLRNIANVMAASGCEVPSWI 523
           V+NYD       ++HRIGR+GRAG R G A T  T+ +  F   + N + A+G  VP  +
Sbjct: 550 VVNYDIAKDMDMHVHRIGRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQNVPPEL 609

[Close]

BLAST of MS027708.1 vs. TAIR 10
Match: AT5G63120.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 235.0 bits (598), Expect = 1.4e-61
Identity = 143/406 (35.22%), Postives = 224/406 (55.17%), Query Frame = 0


Query: 114 ALFRKKYNIHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLL 173
           A++R + +I V G +VP P++ F + +        ++  + +LGF EPTPIQ Q  P+ L
Sbjct: 145 AMYRTERDISVEGRDVPKPMKMFQDAN----FPDNILEAIAKLGFTEPTPIQAQGWPMAL 204

Query: 174 SGRECFACAPTGSGKTLAFVCPMLMKLK-QP---SKEAIRAVILCPTRELASQTTRECKK 233
            GR+    A TGSGKTLA++ P L+ +  QP     +    +IL PTRELA Q   E +K
Sbjct: 205 KGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRK 264

Query: 234 LAKGTKFRIKMVTKEVLRHADFS--KFSCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDE 293
               +  R   +     +       +   +++I+TP RL   +  +  +L RV YLVLDE
Sbjct: 265 FGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDE 324

Query: 294 SDKLFELGLLKQIDSIVKACSNPSIIRSLFSATLPDFVEDLARSVMHDAVRVIVGRKN-T 353
           +D++ ++G   QI  IV     P     L+SAT P  VE LAR  + D  + I+G  +  
Sbjct: 325 ADRMLDMGFEPQIRKIVSQI-RPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTDLK 384

Query: 354 ASETVKQKLVFAGSEE--GKLLALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIRV 413
           A++++ Q +    + E   +LL L +   +     +LIFV++K    ++  +L  +    
Sbjct: 385 ANQSINQVIEIVPTPEKYNRLLTLLKQLMD--GSKILIFVETKRGCDQVTRQLRMDGWPA 444

Query: 414 NVIHSDLSQIERENAVDDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIHR 473
             IH D +Q ER+  + +F++G+S ++ ATDV ARG+D K + CV+NYDFP++   YIHR
Sbjct: 445 LAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHR 504

Query: 474 IGRSGRAGRSGEAITFYTEDDIPFLRNIANVMAASGCEVPSWISEL 511
           IGR+GRAG  G A TF+T D+  F R +  ++  +G  VP  +S L
Sbjct: 505 IGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQVVPPTLSAL 543

[Close]

BLAST of MS027708.1 vs. TAIR 10
Match: AT3G58510.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 232.6 bits (592), Expect = 7.2e-61
Identity = 140/405 (34.57%), Postives = 218/405 (53.83%), Query Frame = 0


Query: 122 IHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRECFAC 181
           +  SG +VP P+  FA++    +    L  N+    +  PTP+QR AIP+LL+ R+  AC
Sbjct: 139 VETSGGDVPPPVNTFADI----DLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMAC 198

Query: 182 APTGSGKTLAFVCPMLMK-LKQPSKEAIR--------AVILCPTRELASQTTRECKKLAK 241
           A TGSGKT AF  P++   +K    E  R        AVIL PTRELA Q   E KK + 
Sbjct: 199 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSY 258

Query: 242 GTKFRIKMVTKEVLRHADFSKF--SCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDK 301
            T  ++ +       H    +    CD+L++TP RL   + + +V +  + +L LDE+D+
Sbjct: 259 QTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADR 318

Query: 302 LFELGLLKQIDSIVKACSNPSI-IRS--LFSATLPDFVEDLARSVMHDAVRVIVGRKNTA 361
           + ++G   QI  IV+    P   +R   LFSAT P  ++ LA   M + + + VGR  ++
Sbjct: 319 MLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSS 378

Query: 362 SETVKQKLVFAGSEEGKL----LALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIR 421
           ++ + Q++ F    + +     L   Q  ++      L+FV++K  A  L   L      
Sbjct: 379 TDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFP 438

Query: 422 VNVIHSDLSQIERENAVDDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIH 481
              IH D +Q ERE A+  F+ G++ +L+ATDV ARG+D   V  V+N+D P+    Y+H
Sbjct: 439 ATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVH 498

Query: 482 RIGRSGRAGRSGEAITFYTEDDIPFLRNIANVMAASGCEVPSWIS 509
           RIGR+GRAG+SG A  F+ E++    R++A +M  +  EVP W++
Sbjct: 499 RIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLT 539

[Close]

BLAST of MS027708.1 vs. TAIR 10
Match: AT3G58510.2 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 232.6 bits (592), Expect = 7.2e-61
Identity = 140/405 (34.57%), Postives = 218/405 (53.83%), Query Frame = 0


Query: 122 IHVSGNNVPSPLQNFAELSTRFECDSYLIRNLVELGFKEPTPIQRQAIPVLLSGRECFAC 181
           +  SG +VP P+  FA++    +    L  N+    +  PTP+QR AIP+LL+ R+  AC
Sbjct: 139 VETSGGDVPPPVNTFADI----DLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMAC 198

Query: 182 APTGSGKTLAFVCPMLMK-LKQPSKEAIR--------AVILCPTRELASQTTRECKKLAK 241
           A TGSGKT AF  P++   +K    E  R        AVIL PTRELA Q   E KK + 
Sbjct: 199 AQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSY 258

Query: 242 GTKFRIKMVTKEVLRHADFSKF--SCDVLISTPLRLRLAIRKKKVDLSRVEYLVLDESDK 301
            T  ++ +       H    +    CD+L++TP RL   + + +V +  + +L LDE+D+
Sbjct: 259 QTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADR 318

Query: 302 LFELGLLKQIDSIVKACSNPSI-IRS--LFSATLPDFVEDLARSVMHDAVRVIVGRKNTA 361
           + ++G   QI  IV+    P   +R   LFSAT P  ++ LA   M + + + VGR  ++
Sbjct: 319 MLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSS 378

Query: 362 SETVKQKLVFAGSEEGKL----LALRQSFSESLNPPVLIFVQSKERAKELYGELAFENIR 421
           ++ + Q++ F    + +     L   Q  ++      L+FV++K  A  L   L      
Sbjct: 379 TDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFP 438

Query: 422 VNVIHSDLSQIERENAVDDFRAGKSWVLIATDVIARGMDFKGVNCVINYDFPDSAAAYIH 481
              IH D +Q ERE A+  F+ G++ +L+ATDV ARG+D   V  V+N+D P+    Y+H
Sbjct: 439 ATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVH 498

Query: 482 RIGRSGRAGRSGEAITFYTEDDIPFLRNIANVMAASGCEVPSWIS 509
           RIGR+GRAG+SG A  F+ E++    R++A +M  +  EVP W++
Sbjct: 499 RIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLT 539

The following BLAST results are available for this feature:

BLAST of MS027708.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145743.1	5.5e-297	98.88	DEAD-box ATP-dependent RNA helicase 57 [Momordica charantia]	[more]
XP_038903184.1	5.9e-275	90.84	DEAD-box ATP-dependent RNA helicase 57 [Benincasa hispida]	[more]
XP_023540379.1	8.5e-274	90.64	DEAD-box ATP-dependent RNA helicase 57 [Cucurbita pepo subsp. pepo]	[more]
XP_023005802.1	4.2e-273	90.26	DEAD-box ATP-dependent RNA helicase 57 [Cucurbita maxima]	[more]
XP_004137811.1	2.7e-272	89.70	DEAD-box ATP-dependent RNA helicase 57 [Cucumis sativus] >XP_011651949.1 DEAD-bo...	[more]

BLAST of MS027708.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TG1	5.3e-210	69.91	DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana OX=3702 GN=RH57 P...	[more]
Q5K5B6	1.8e-194	65.19	DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q99PT0	5.1e-120	45.39	Probable ATP-dependent RNA helicase DDX52 OS=Rattus norvegicus OX=10116 GN=Ddx52...	[more]
Q8K301	4.3e-119	45.21	Probable ATP-dependent RNA helicase DDX52 OS=Mus musculus OX=10090 GN=Ddx52 PE=2...	[more]
A5D7C1	5.6e-119	46.26	Probable ATP-dependent RNA helicase DDX52 OS=Bos taurus OX=9913 GN=DDX52 PE=2 SV...	[more]

BLAST of MS027708.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CWS9	2.7e-297	98.88	DEAD-box ATP-dependent RNA helicase 57 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1KU60	2.1e-273	90.26	DEAD-box ATP-dependent RNA helicase 57 OS=Cucurbita maxima OX=3661 GN=LOC1114986...	[more]
A0A0A0LAD5	1.3e-272	89.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G736920 PE=4 SV=1	[more]
A0A6J1G4H0	2.3e-272	90.07	DEAD-box ATP-dependent RNA helicase 57 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A1S3B6W1	9.5e-271	89.14	DEAD-box ATP-dependent RNA helicase 57 OS=Cucumis melo OX=3656 GN=LOC103486464 P...	[more]

BLAST of MS027708.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09720.1	3.8e-211	69.91	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT2G47330.1	2.4e-64	36.16	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT5G63120.2	1.4e-61	35.22	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT3G58510.1	7.2e-61	34.57	DEA(D/H)-box RNA helicase family protein	[more]
AT3G58510.2	7.2e-61	34.57	DEA(D/H)-box RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 391..472 e-value: 9.8E-33 score: 124.7
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 366..472 e-value: 2.0E-29 score: 102.1
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 350..511 score: 23.798946
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 157..354 e-value: 8.9E-49 score: 178.0
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 169..339 score: 27.340452
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 162..327 e-value: 1.4E-39 score: 135.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 347..532 e-value: 5.2E-52 score: 178.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 113..346 e-value: 1.0E-71 score: 242.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 208..492
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 513..535
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..71
None	No IPR available	PANTHER	PTHR47958:SF27	DEAD-BOX ATP-DEPENDENT RNA HELICASE 57	coord: 6..528
None	No IPR available	PANTHER	PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	coord: 6..528
None	No IPR available	CDD	cd18787	SF2_C_DEAD	coord: 351..481 e-value: 7.47299E-57 score: 184.248
IPR014014	RNA helicase, DEAD-box type, Q motif	PROSITE	PS51195	Q_MOTIF	coord: 138..166 score: 9.00984
IPR044764	DDX52/Rok1, DEAD-box helicase domain	CDD	cd17957	DEADc_DDX52	coord: 149..342 e-value: 5.61187E-105 score: 311.06

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS027708	MS027708	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS027708.1-cds	MS027708.1-cds-scaffold729:1408764..1408844	CDS
MS027708.1-cds	MS027708.1-cds-scaffold729:1408941..1409064	CDS
MS027708.1-cds	MS027708.1-cds-scaffold729:1409155..1409282	CDS
MS027708.1-cds	MS027708.1-cds-scaffold729:1409408..1409499	CDS
MS027708.1-cds	MS027708.1-cds-scaffold729:1409739..1409835	CDS
MS027708.1-cds	MS027708.1-cds-scaffold729:1410011..1410091	CDS
MS027708.1-cds	MS027708.1-cds-scaffold729:1410165..1410397	CDS
MS027708.1-cds	MS027708.1-cds-scaffold729:1410487..1410681	CDS
MS027708.1-cds	MS027708.1-cds-scaffold729:1410777..1410867	CDS
MS027708.1-cds	MS027708.1-cds-scaffold729:1411163..1411285	CDS
MS027708.1-cds	MS027708.1-cds-scaffold729:1411650..1411800	CDS
MS027708.1-cds	MS027708.1-cds-scaffold729:1411933..1412144	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS027708.1	MS027708.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030490	maturation of SSU-rRNA
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003724	RNA helicase activity