MS026937.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS026937.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Pentatricopeptide repeat-containing protein
Location	scaffold9_2: 27945 .. 31527 (+)
Sequence length	885
RNA-Seq Expression	MS026937.1
Synteny	MS026937.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGATGGTATTTTTGCCTCGATGCTGCTCCTTATTTCTGTTTCCTACCGAATTTTTCATCCGCCACTACCAGGATCCTTCAGTTCTGTTCAAATTCTTGACCCACTCAAGAAAACATCACCCCCTTCTTCTGCGGTCATTTCACCTGATCCATCAATTAGAAACTTCAGAAGCGCTTGTTTCAGCTCTGGTGATCGCTGTGAACTCTTGCACTTCCGTCTCCAATTGCAGGAAAATTCATGCCCGAGTAATAAAATCTTTTCTTTATAGAGATGGGTTCATTGGGGATCAGCTGGCCACTTGCTATAATAATCTGGGTTGTGCAGAGGATGCACAGAAGCTGTTTGATGATATGCCTGATAAGGATTTGGTTTCTTGGAACTCACTGATTTCGGGTTTTTCACGAGGAAAGTGTCTTGATATGACCCTAAAAGCATTCTATTTGTTGAAGTTTGAAATGTCAATTAAACCCAATGAGATCACGATTCTATCGATGATATCAGCTTGTAATGAAGCTTTAGATGCAGGGAAGTATATTCATGGCTTTGCAGTTAAAGTTGGCGTTTTTTTGGAAGTTAAGGTCGTTAATTCTCTCATTAACATGTATGGGAAGTATGGGGATTTACAATCAGCTTGTAGATTGTTTGAGGCTGTTCCATACCCGAATACGATATCATGGAATTCAATAATTGGAGCTCAAGTTACTAATGGCTGTGCACAAAAGGGAATTGACTGTTTTAATAAGATGAGAAGGCTTGGGATTGAGCCGGATGAAGGGACTATCCTGGCAGTGCTTCAAGCTTGCGAGCATTTGGGTATAGGAAAATTGGCAGAAGGCATTCATGGTTTAATCTTCCGCAATGGTCTAGGCACGAAAATCAGCATAGCAACTGCTATTTTAGATTTGTTCGCAAAATTGGGGAGATTAAGTGCTTCATGTGATGTTTTTTGGGAGATGGGCTGTGCAGACAGAGTTGCATGGACTGCTATGCTTGCAGGATATGCAGCACATGGATTGGGAAGGGAAGCGATCAAGCTTTTCGAGAGCATGACCGAGAATGGTTTGGTGCCTGATCACGTAACTTTTACTCACTTGCTTAGCGCTTGTAGTCATTCAGGGCTAGTCAGAGAGGGGAAAAGTTACTTCAATATGATGTCTGAAGTCTATGGAATTGAGCCCAGGCTAGATCATTATTCATGTATGGTCGATCTACTCGGTCGTTGTGGACTTTTGAACGATGCTTATGAGGTGATACAAAACATGCCTATGGAGCCTAATGCTGGTGTGTGGGGTGCTCTTCTTGGTGCTTGTAGAGTTAATGGTAACATTGAACTTGGTAAGGAAGTTGCAGAGCATTTGATTAATTTGGAACCTCTGGACTCCAGAAACTATATCATGTTATCAAATATGTATTCTGCATCTCGTTCTTGGAAGGATGCTGCCAAAGTGAGGGCCTTGCTAAAGGAGAGAGGTCTGAGAAGAAACCCCGGAAGTAGCTCCATTGAACATGAAAACAAGATCCACTGCTTCTTAGTCGGTGATCAATCTCACCCCGAGTCGGAGAAGATCTATTCCAAGCTCGAAGAATTGCTCGAAAAAATAAGGAAAGCTGGATATAGTCCAAGAACAGAGTATGTTCTACAAGACGTTGAAGAGGAAGTTAAGGAGGATATGATAAACAAGCACAGCGAGAAGTTGGCCATTGCGTTTGGGCTGTTGGTGTGTAAAGAAGGAGCACCTTTGATCATAACAAAAAATCTTAGAATTTGTGGAGATTGTCATAACACTGCAAAGCTCATATCATTGATCGAAAAGCGTACCATTATTATCCGAGATCCAAAACGCTTTCACCATTTCTCAGATGGATTCTGTTCTTGTGGAGATTACTGGTAAGTCTTTACACTGATCCATAATGCCACTAATGCATATTCTAATGCATATTTATACCTTTAATATATATAGCTAAGCTACGTAGATCGATGACTTGACAGCTTGTTCAGTTTGTGTTTAATCAATCCAGTTAAAATGGATTGTTTAGTAAAGTTTGTCACATTGGATACCCTTAATTTTAGAGGTTAAAAAACACTTTTGGTACTATACTTTCATTAAAGTAGCGATTTAACCTATGAATTTTAGTGTAACAATTTAGTCATTGTACTCTCAAATTGGTAACAACTAAGTCTCTAAATTTTATTATGGAACAATTTAGTTTCACTAGTTTAAAGTTTGTACTAATTTATTCCTTATCGTGGTTTTTTTTTATTTAATAAGGTTTTTTTATATATGTAGATTGATCAACTAACGAGGGACCAAATATATATATAAGTTAGAAAAAGTGAGTTGTTATACGATAAAAATCGACACTTAATTTTGATGAAATTTTTCACGATAGGGATTAAATCGTTACAAATTTTAAACTACAGAACTAAATTGTTACTAATTTAAAAATATTGGACTAAATCGTTATAAACTAAAGTTTAGGGAGTATATCATTACGAATTATAATTCAAGGACTAAATTGTTATTTCAATGAAGGTAAAGGAACCAAATGTGTTTTTTAACCAATTTTATAACTTGAAAAGATTATAAGGGTGGATATCAAAAATCATTGTGGACCATCCTACAACCTGGGTTGTAATAGGCTAGTACAACTTGTGCATCGTGCTTCAATGTGTTACGTATTCATAATGTATTAGGTGAACCGAGGCCTTAAAAATCGACCTCGATATGTCGACATGTAGAGGGGAGGGGAATGTCATTTTTCCTTCTTGTTGACAAGTCGACGTGTCACTGTAGAATCACATTTGTTTTTCTTCTAATGTTTATTTTTTACTTTTTACTTTTTACTTACTTTTTCTTTTCAAATTTAAATTCACACAATTTCCAAATTTATTTCTAAACTACTCTTCAATTTTTATTTTTCCAATCAAACTTGCATAAATTCCAAGGCTAATCTTAGTCACTCAAATTACTTTTTTTTTTCTTAATTTTAATTTTGAATTTTGTTTTATTATTTTCTACCAACTACAAATATCTCTTTTACTTTCACTTCTTCAACTCTCTCTAATTTTCTTCACACTTCAATCTAAAAATTCTCAATATTCTCTTATGGTCTCTAATCCTCTCCTACTACTTATCTTAAGTTACAAGTGAAAATTATCTTTCAAACTCTCTTATTTCGACTATTTTCTATATTATTATATGAGATAGTACTTGAGTTTGACGAAATCTCTATTTGATCCTTAGGTTTGAAAAACTAACACTTTAGTCTCCAACCTTTATAAAATTGTTCTAAACAGTTCTTGATTAACTTTATTTTATGTGACAGTTAAATTTACTCTTGATTTTTAATTGAGATGGCAAAATATGTTGAAGTAATATTTGTTTTAGGGCTAATGTGGCATTTTTCCCTCTCTTTCCTTTCCGTTTGCAGGTTGCAAATCTGGAACAATTGACCTTGCGCCTTCGCTTTCTCTGTATCTGAAACTTTTTGATCTAAAACGAGGGAACTCGAAAGAGAGAGAGTTGTCGGCGGCGAACTACATTGAGAAAATGAGTAGCGGCGGCGACGGTTGGTAA

mRNA sequence

ATGGTAGATGGTATTTTTGCCTCGATGCTGCTCCTTATTTCTGTTTCCTACCGAATTTTTCATCCGCCACTACCAGGATCCTTCAGTTCTGTTCAAATTCTTGACCCACTCAAGAAAACATCACCCCCTTCTTCTGCGGTCATTTCACCTGATCCATCAATTAGAAACTTCAGAAGCGCTTGTTTCAGCTCTGGTGATCGCTGTGAACTCTTGCACTTCCGTCTCCAATTGCAGGAAAATTCATGCCCGAAGGATGCACAGAAGCTGTTTGATGATATGCCTGATAAGGATTTGGTTTCTTGGAACTCACTGATTTCGGGTTTTTCACGAGGAAAGTGTCTTGATATGACCCTAAAAGCATTCTATTTGTTGAAGTTTGAAATGTCAATTAAACCCAATGAGATCACGATTCTATCGATGATATCAGCTTGTAATGAAGCTTTAGATGCAGGGAAGTATATTCATGGCTTTGCAGTTAAAGTTGGCGTTTTTTTGGAAGTTAAGGTCGTTAATTCTCTCATTAACATGTATGGGAAGTATGGGGATTTACAATCAGCTTGTAGATTGTTTGAGGCTGTTCCATACCCGAATACGATATCATGGAATTCAATAATTGGAGCTCAAGTTACTAATGGCTGTGCACAAAAGGGAATTGACTGTTTTAATAAGATGAGAAGGCTTGGGATTGAGCCGGATGAAGGGACTATCCTGGCAGTGCTTCAAGCTTGCGAGCATTTGGGTTGCAAATCTGGAACAATTGACCTTGCGCCTTCGCTTTCTCTGTATCTGAAACTTTTTGATCTAAAACGAGGGAACTCGAAAGAGAGAGAGTTGTCGGCGGCGAACTACATTGAGAAAATGAGTAGCGGCGGCGACGGTTGGTAA

Coding sequence (CDS)

ATGGTAGATGGTATTTTTGCCTCGATGCTGCTCCTTATTTCTGTTTCCTACCGAATTTTTCATCCGCCACTACCAGGATCCTTCAGTTCTGTTCAAATTCTTGACCCACTCAAGAAAACATCACCCCCTTCTTCTGCGGTCATTTCACCTGATCCATCAATTAGAAACTTCAGAAGCGCTTGTTTCAGCTCTGGTGATCGCTGTGAACTCTTGCACTTCCGTCTCCAATTGCAGGAAAATTCATGCCCGAAGGATGCACAGAAGCTGTTTGATGATATGCCTGATAAGGATTTGGTTTCTTGGAACTCACTGATTTCGGGTTTTTCACGAGGAAAGTGTCTTGATATGACCCTAAAAGCATTCTATTTGTTGAAGTTTGAAATGTCAATTAAACCCAATGAGATCACGATTCTATCGATGATATCAGCTTGTAATGAAGCTTTAGATGCAGGGAAGTATATTCATGGCTTTGCAGTTAAAGTTGGCGTTTTTTTGGAAGTTAAGGTCGTTAATTCTCTCATTAACATGTATGGGAAGTATGGGGATTTACAATCAGCTTGTAGATTGTTTGAGGCTGTTCCATACCCGAATACGATATCATGGAATTCAATAATTGGAGCTCAAGTTACTAATGGCTGTGCACAAAAGGGAATTGACTGTTTTAATAAGATGAGAAGGCTTGGGATTGAGCCGGATGAAGGGACTATCCTGGCAGTGCTTCAAGCTTGCGAGCATTTGGGTTGCAAATCTGGAACAATTGACCTTGCGCCTTCGCTTTCTCTGTATCTGAAACTTTTTGATCTAAAACGAGGGAACTCGAAAGAGAGAGAGTTGTCGGCGGCGAACTACATTGAGAAAATGAGTAGCGGCGGCGACGGTTGGTAA

Protein sequence

MVDGIFASMLLLISVSYRIFHPPLPGSFSSVQILDPLKKTSPPSSAVISPDPSIRNFRSACFSSGDRCELLHFRLQLQENSCPKDAQKLFDDMPDKDLVSWNSLISGFSRGKCLDMTLKAFYLLKFEMSIKPNEITILSMISACNEALDAGKYIHGFAVKVGVFLEVKVVNSLINMYGKYGDLQSACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTILAVLQACEHLGCKSGTIDLAPSLSLYLKLFDLKRGNSKERELSAANYIEKMSSGGDGW

Homology

[Close]

BLAST of MS026937.1 vs. NCBI nr
Match: XP_022144167.1 (pentatricopeptide repeat-containing protein At5g40410, mitochondrial isoform X1 [Momordica charantia])

HSP 1 Score: 339.3 bits (869), Expect = 3.2e-89
Identity = 181/251 (72.11%), Postives = 191/251 (76.10%), Query Frame = 0


Query: 8   SMLLLISVSYRIFHPPLPGSFSSVQILDPLKKTSPPSSAVISPDPSIRNFRSACFS---- 67
           S+L       R  HP L  SF SV  L+  +         ++   S+ N R+        
Sbjct: 26  SVLFKFLTHSRKHHPLLLRSFHSVHQLETSEALVSALVIAVNSCTSVSNCRTIHARVIKS 85

Query: 68  -------SGDRCELLHFRLQLQENSCPKDAQKLFDDMPDKDLVSWNSLISGFSRGKCLDM 127
                   GD+    +  L      C +DAQKLFDDMPDKDLVSWNSLISGFSRGKCLDM
Sbjct: 86  FLYRDGFIGDQLAACYNNL-----GCAEDAQKLFDDMPDKDLVSWNSLISGFSRGKCLDM 145

Query: 128 TLKAFYLLKFEMSIKPNEITILSMISACNEALDAGKYIHGFAVKVGVFLEVKVVNSLINM 187
           TLKAFYLLKFEMSIKPNEITILSMISACNEALDAGKYIHGFAVKVGVFLEVKVVNSLINM
Sbjct: 146 TLKAFYLLKFEMSIKPNEITILSMISACNEALDAGKYIHGFAVKVGVFLEVKVVNSLINM 205

Query: 188 YGKYGDLQSACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTI 247
           YGKYGDLQSACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTI
Sbjct: 206 YGKYGDLQSACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTI 265

[Close]

BLAST of MS026937.1 vs. NCBI nr
Match: XP_022144168.1 (pentatricopeptide repeat-containing protein At5g40410, mitochondrial isoform X2 [Momordica charantia])

HSP 1 Score: 339.3 bits (869), Expect = 3.2e-89
Identity = 181/251 (72.11%), Postives = 191/251 (76.10%), Query Frame = 0


Query: 8   SMLLLISVSYRIFHPPLPGSFSSVQILDPLKKTSPPSSAVISPDPSIRNFRSACFS---- 67
           S+L       R  HP L  SF SV  L+  +         ++   S+ N R+        
Sbjct: 26  SVLFKFLTHSRKHHPLLLRSFHSVHQLETSEALVSALVIAVNSCTSVSNCRTIHARVIKS 85

Query: 68  -------SGDRCELLHFRLQLQENSCPKDAQKLFDDMPDKDLVSWNSLISGFSRGKCLDM 127
                   GD+    +  L      C +DAQKLFDDMPDKDLVSWNSLISGFSRGKCLDM
Sbjct: 86  FLYRDGFIGDQLAACYNNL-----GCAEDAQKLFDDMPDKDLVSWNSLISGFSRGKCLDM 145

Query: 128 TLKAFYLLKFEMSIKPNEITILSMISACNEALDAGKYIHGFAVKVGVFLEVKVVNSLINM 187
           TLKAFYLLKFEMSIKPNEITILSMISACNEALDAGKYIHGFAVKVGVFLEVKVVNSLINM
Sbjct: 146 TLKAFYLLKFEMSIKPNEITILSMISACNEALDAGKYIHGFAVKVGVFLEVKVVNSLINM 205

Query: 188 YGKYGDLQSACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTI 247
           YGKYGDLQSACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTI
Sbjct: 206 YGKYGDLQSACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTI 265

[Close]

BLAST of MS026937.1 vs. NCBI nr
Match: XP_023546177.1 (pentatricopeptide repeat-containing protein At5g40410, mitochondrial isoform X1 [Cucurbita pepo subsp. pepo] >XP_023546178.1 pentatricopeptide repeat-containing protein At5g40410, mitochondrial isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 276.6 bits (706), Expect = 2.6e-70
Identity = 130/164 (79.27%), Postives = 146/164 (89.02%), Query Frame = 0


Query: 84  KDAQKLFDDMPDKDLVSWNSLISGFSRGKCLDMTLKAFYLLKFEMSIKPNEITILSMISA 143
           +DAQK+FDDMPD+DLVSWNSLI GFSR  CL +TLKAF  +KFEMS+KPNE+TILSMISA
Sbjct: 108 EDAQKVFDDMPDRDLVSWNSLICGFSR--CLHVTLKAFCTMKFEMSVKPNEVTILSMISA 167

Query: 144 CNEALDAGKYIHGFAVKVGVFLEVKVVNSLINMYGKYGDLQSACRLFEAVPYPNTISWNS 203
           CN ALD G+YIHGFA+K+GV LEVKVVNSLINMYGK GDL SACRLFEA+PYPN +SWNS
Sbjct: 168 CNGALDVGRYIHGFAIKIGVSLEVKVVNSLINMYGKSGDLTSACRLFEAIPYPNIVSWNS 227

Query: 204 IIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTILAVLQACEHLG 248
           II A+VTNGCA +G+ CFNKMR  GIEPDEGTILA+LQAC HLG
Sbjct: 228 IIAARVTNGCAGEGVHCFNKMRMFGIEPDEGTILALLQACVHLG 269

[Close]

BLAST of MS026937.1 vs. NCBI nr
Match: XP_008445305.2 (PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g40410, mitochondrial-like [Cucumis melo])

HSP 1 Score: 275.0 bits (702), Expect = 7.4e-70
Identity = 154/242 (63.64%), Postives = 173/242 (71.49%), Query Frame = 0


Query: 9   MLLLISVSYRIFHPPLPGSFSSVQILDPLKKTSPPSSAVISPDPSIRNFRSACFSS---G 68
           +LLL+    R FH   P + S   + D L      +S     +   R F+S  +     G
Sbjct: 41  LLLLL----RSFHLIRPCAASEALVSDLLIAVKSCTSISNCREIHARVFKSLLYRDGFIG 100

Query: 69  DRCELLHFRLQLQENSCPKDAQKLFDDMPDKDLVSWNSLISGFSRGKCLDMTLKAFYLLK 128
           D+    + +L   E     DAQKLFDDMP KDLVSWNSLISGFSR  CL MTL AFY +K
Sbjct: 101 DQLVTCYNKLGYAE-----DAQKLFDDMPHKDLVSWNSLISGFSR--CLHMTLTAFYTMK 160

Query: 129 FEMSIKPNEITILSMISACNEALDAGKYIHGFAVKVGVFLEVKVVNSLINMYGKYGDLQS 188
           FEMSIKPNE+TILSMISACN ALDAGKYIHGFA+KVG  LEVKV NSLINMYGK GDL S
Sbjct: 161 FEMSIKPNEVTILSMISACNGALDAGKYIHGFAIKVGGTLEVKVANSLINMYGKSGDLTS 220

Query: 189 ACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTILAVLQACEH 248
           ACRLFEA+P PNT+SWNSII AQVTNGCA++GI  FNKMRR GIE DEGTILA+LQAC H
Sbjct: 221 ACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIXFFNKMRRFGIEQDEGTILALLQACLH 271

[Close]

BLAST of MS026937.1 vs. NCBI nr
Match: KAA0064858.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 274.6 bits (701), Expect = 9.7e-70
Identity = 154/242 (63.64%), Postives = 173/242 (71.49%), Query Frame = 0


Query: 9   MLLLISVSYRIFHPPLPGSFSSVQILDPLKKTSPPSSAVISPDPSIRNFRSACFSS---G 68
           +LLL+    R FH   P + S   + D L      +S     +   R F+S  +     G
Sbjct: 41  LLLLL----RSFHLIRPCAASEALVSDLLIAVKSCTSISNCREIHARVFKSLLYRDGFIG 100

Query: 69  DRCELLHFRLQLQENSCPKDAQKLFDDMPDKDLVSWNSLISGFSRGKCLDMTLKAFYLLK 128
           D+    + +L   E     DAQKLFDDMP KDLVSWNSLISGFSR  CL MTL AFY +K
Sbjct: 101 DQLVTCYNKLGYAE-----DAQKLFDDMPHKDLVSWNSLISGFSR--CLHMTLTAFYTMK 160

Query: 129 FEMSIKPNEITILSMISACNEALDAGKYIHGFAVKVGVFLEVKVVNSLINMYGKYGDLQS 188
           FEMSIKPNE+TILSMISACN ALDAGKYIHGFA+KVG  LEVKV NSLINMYGK GDL S
Sbjct: 161 FEMSIKPNEVTILSMISACNGALDAGKYIHGFAIKVGGTLEVKVANSLINMYGKSGDLTS 220

Query: 189 ACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTILAVLQACEH 248
           ACRLFEA+  PNT+SWNSII AQVTNGCA++GID FNKMRR GIE DEGTILA+LQAC H
Sbjct: 221 ACRLFEAISDPNTVSWNSIIAAQVTNGCAREGIDFFNKMRRFGIEQDEGTILALLQACLH 271

[Close]

BLAST of MS026937.1 vs. ExPASy Swiss-Prot
Match: Q9FND6 (Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H15 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 8.0e-43
Identity = 90/185 (48.65%), Postives = 126/185 (68.11%), Query Frame = 0


Query: 69  ELLHFRLQLQENSCPKDAQKLFDDMPDKDLVSWNSLISGFS----RGKCLDMTLKAFYLL 128
           +L+   L+L  + C   A+KLFD+MP++DLVSWNSLISG+S     GKC ++  +   ++
Sbjct: 71  QLVGCYLRLGHDVC---AEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSR---MM 130

Query: 129 KFEMSIKPNEITILSMISAC--NEALDAGKYIHGFAVKVGVFLEVKVVNSLINMYGKYGD 188
             E+  +PNE+T LSMISAC    + + G+ IHG  +K GV  EVKVVN+ IN YGK GD
Sbjct: 131 ISEVGFRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGD 190

Query: 189 LQSACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTILAVLQA 248
           L S+C+LFE +   N +SWN++I   + NG A+KG+  FN  RR+G EPD+ T LAVL++
Sbjct: 191 LTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRS 249

[Close]

BLAST of MS026937.1 vs. ExPASy Swiss-Prot
Match: Q9LN01 (Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H12 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 6.0e-30
Identity = 65/182 (35.71%), Postives = 118/182 (64.84%), Query Frame = 0


Query: 84  KDAQKLFDDMPDKDLVSWNSLISGFSRGKCLDMTLKAFYLLKFEMSIKPNEITILSMISA 143
           ++AQKLFD++P KD+VSWN++ISG++        L+ F  +  + +++P+E T+++++SA
Sbjct: 217 ENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM-MKTNVRPDESTMVTVVSA 276

Query: 144 CNE--ALDAGKYIHGFAVKVGVFLEVKVVNSLINMYGKYGDLQSACRLFEAVPYPNTISW 203
           C +  +++ G+ +H +    G    +K+VN+LI++Y K G+L++AC LFE +PY + ISW
Sbjct: 277 CAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISW 336

Query: 204 NSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTILAVLQACEHLGCKSGTIDLAPSLSL 263
           N++IG        ++ +  F +M R G  P++ T+L++L AC HL    G ID+   + +
Sbjct: 337 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL----GAIDIGRWIHV 393

[Close]

BLAST of MS026937.1 vs. ExPASy Swiss-Prot
Match: P93011 (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H6 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 9.6e-28
Identity = 60/165 (36.36%), Postives = 101/165 (61.21%), Query Frame = 0


Query: 86  AQKLFDDMPDKDLVSWNSLISGFSRGKCLDMTLKAFYLLKFEMSIKPNEITILSMISACN 145
           A+++FD MP+K +V+WNSL+SGF +    D  ++ FY ++ E   +P+  T +S++SAC 
Sbjct: 161 ARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMR-ESGFEPDSATFVSLLSACA 220

Query: 146 E--ALDAGKYIHGFAVKVGVFLEVKVVNSLINMYGKYGDLQSACRLFEAVPYPNTISWNS 205
           +  A+  G ++H + +  G+ L VK+  +LIN+Y + GD+  A  +F+ +   N  +W +
Sbjct: 221 QTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTA 280

Query: 206 IIGAQVTNGCAQKGIDCFNKMR-RLGIEPDEGTILAVLQACEHLG 248
           +I A  T+G  Q+ ++ FNKM    G  P+  T +AVL AC H G
Sbjct: 281 MISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAG 324

[Close]

BLAST of MS026937.1 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 2.1e-27
Identity = 60/176 (34.09%), Postives = 106/176 (60.23%), Query Frame = 0


Query: 86  AQKLFDDMPDKDLVSWNSLISGFSRGKCLDMTLKAFYLLKFEMSIKPNEITILSMISACN 145
           A+++ + MP KD+V+WN+LIS + +    +  L  F+ L+ + ++K N+IT++S +SAC 
Sbjct: 317 AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACA 376

Query: 146 E--ALDAGKYIHGFAVKVGVFLEVKVVNSLINMYGKYGDLQSACRLFEAVPYPNTISWNS 205
           +  AL+ G++IH +  K G+ +   V ++LI+MY K GDL+ +  +F +V   +   W++
Sbjct: 377 QVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSA 436

Query: 206 IIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTILAVLQACEHLGCKSGTIDLAPSL 260
           +IG    +GC  + +D F KM+   ++P+  T   V  AC H    +G +D A SL
Sbjct: 437 MIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSH----TGLVDEAESL 488

[Close]

BLAST of MS026937.1 vs. ExPASy Swiss-Prot
Match: Q9SZT8 (Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ELI1 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.7e-27
Identity = 63/177 (35.59%), Postives = 104/177 (58.76%), Query Frame = 0


Query: 86  AQKLFDDMPDKDLVSWNSLISGFSRGKCLDMTLKAFYLLKFEMSIKPNEITILSMISACN 145
           A+ LFD M ++D+VSWN +I G+++    +  L  F  L  E   KP+EIT+++ +SAC+
Sbjct: 211 ARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACS 270

Query: 146 E--ALDAGKYIHGFAVKVGVFLEVKVVNSLINMYGKYGDLQSACRLFEAVPYPNTISWNS 205
           +  AL+ G++IH F     + L VKV   LI+MY K G L+ A  +F   P  + ++WN+
Sbjct: 271 QIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNA 330

Query: 206 IIGAQVTNGCAQKGIDCFNKMRRL-GIEPDEGTILAVLQACEHLGCKSGTIDLAPSL 260
           +I     +G +Q  +  FN+M+ + G++P + T +  LQAC H G  +  I +  S+
Sbjct: 331 MIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESM 387

[Close]

BLAST of MS026937.1 vs. ExPASy TrEMBL
Match: A0A6J1CSK8 (pentatricopeptide repeat-containing protein At5g40410, mitochondrial isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013924 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.6e-89
Identity = 181/251 (72.11%), Postives = 191/251 (76.10%), Query Frame = 0


Query: 8   SMLLLISVSYRIFHPPLPGSFSSVQILDPLKKTSPPSSAVISPDPSIRNFRSACFS---- 67
           S+L       R  HP L  SF SV  L+  +         ++   S+ N R+        
Sbjct: 26  SVLFKFLTHSRKHHPLLLRSFHSVHQLETSEALVSALVIAVNSCTSVSNCRTIHARVIKS 85

Query: 68  -------SGDRCELLHFRLQLQENSCPKDAQKLFDDMPDKDLVSWNSLISGFSRGKCLDM 127
                   GD+    +  L      C +DAQKLFDDMPDKDLVSWNSLISGFSRGKCLDM
Sbjct: 86  FLYRDGFIGDQLAACYNNL-----GCAEDAQKLFDDMPDKDLVSWNSLISGFSRGKCLDM 145

Query: 128 TLKAFYLLKFEMSIKPNEITILSMISACNEALDAGKYIHGFAVKVGVFLEVKVVNSLINM 187
           TLKAFYLLKFEMSIKPNEITILSMISACNEALDAGKYIHGFAVKVGVFLEVKVVNSLINM
Sbjct: 146 TLKAFYLLKFEMSIKPNEITILSMISACNEALDAGKYIHGFAVKVGVFLEVKVVNSLINM 205

Query: 188 YGKYGDLQSACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTI 247
           YGKYGDLQSACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTI
Sbjct: 206 YGKYGDLQSACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTI 265

[Close]

BLAST of MS026937.1 vs. ExPASy TrEMBL
Match: A0A6J1CSX2 (pentatricopeptide repeat-containing protein At5g40410, mitochondrial isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013924 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.6e-89
Identity = 181/251 (72.11%), Postives = 191/251 (76.10%), Query Frame = 0


Query: 8   SMLLLISVSYRIFHPPLPGSFSSVQILDPLKKTSPPSSAVISPDPSIRNFRSACFS---- 67
           S+L       R  HP L  SF SV  L+  +         ++   S+ N R+        
Sbjct: 26  SVLFKFLTHSRKHHPLLLRSFHSVHQLETSEALVSALVIAVNSCTSVSNCRTIHARVIKS 85

Query: 68  -------SGDRCELLHFRLQLQENSCPKDAQKLFDDMPDKDLVSWNSLISGFSRGKCLDM 127
                   GD+    +  L      C +DAQKLFDDMPDKDLVSWNSLISGFSRGKCLDM
Sbjct: 86  FLYRDGFIGDQLAACYNNL-----GCAEDAQKLFDDMPDKDLVSWNSLISGFSRGKCLDM 145

Query: 128 TLKAFYLLKFEMSIKPNEITILSMISACNEALDAGKYIHGFAVKVGVFLEVKVVNSLINM 187
           TLKAFYLLKFEMSIKPNEITILSMISACNEALDAGKYIHGFAVKVGVFLEVKVVNSLINM
Sbjct: 146 TLKAFYLLKFEMSIKPNEITILSMISACNEALDAGKYIHGFAVKVGVFLEVKVVNSLINM 205

Query: 188 YGKYGDLQSACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTI 247
           YGKYGDLQSACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTI
Sbjct: 206 YGKYGDLQSACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTI 265

[Close]

BLAST of MS026937.1 vs. ExPASy TrEMBL
Match: A0A1S3BBW7 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g40410, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103488375 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 3.6e-70
Identity = 154/242 (63.64%), Postives = 173/242 (71.49%), Query Frame = 0


Query: 9   MLLLISVSYRIFHPPLPGSFSSVQILDPLKKTSPPSSAVISPDPSIRNFRSACFSS---G 68
           +LLL+    R FH   P + S   + D L      +S     +   R F+S  +     G
Sbjct: 41  LLLLL----RSFHLIRPCAASEALVSDLLIAVKSCTSISNCREIHARVFKSLLYRDGFIG 100

Query: 69  DRCELLHFRLQLQENSCPKDAQKLFDDMPDKDLVSWNSLISGFSRGKCLDMTLKAFYLLK 128
           D+    + +L   E     DAQKLFDDMP KDLVSWNSLISGFSR  CL MTL AFY +K
Sbjct: 101 DQLVTCYNKLGYAE-----DAQKLFDDMPHKDLVSWNSLISGFSR--CLHMTLTAFYTMK 160

Query: 129 FEMSIKPNEITILSMISACNEALDAGKYIHGFAVKVGVFLEVKVVNSLINMYGKYGDLQS 188
           FEMSIKPNE+TILSMISACN ALDAGKYIHGFA+KVG  LEVKV NSLINMYGK GDL S
Sbjct: 161 FEMSIKPNEVTILSMISACNGALDAGKYIHGFAIKVGGTLEVKVANSLINMYGKSGDLTS 220

Query: 189 ACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTILAVLQACEH 248
           ACRLFEA+P PNT+SWNSII AQVTNGCA++GI  FNKMRR GIE DEGTILA+LQAC H
Sbjct: 221 ACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIXFFNKMRRFGIEQDEGTILALLQACLH 271

[Close]

BLAST of MS026937.1 vs. ExPASy TrEMBL
Match: A0A5A7VB72 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001710 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 4.7e-70
Identity = 154/242 (63.64%), Postives = 173/242 (71.49%), Query Frame = 0


Query: 9   MLLLISVSYRIFHPPLPGSFSSVQILDPLKKTSPPSSAVISPDPSIRNFRSACFSS---G 68
           +LLL+    R FH   P + S   + D L      +S     +   R F+S  +     G
Sbjct: 41  LLLLL----RSFHLIRPCAASEALVSDLLIAVKSCTSISNCREIHARVFKSLLYRDGFIG 100

Query: 69  DRCELLHFRLQLQENSCPKDAQKLFDDMPDKDLVSWNSLISGFSRGKCLDMTLKAFYLLK 128
           D+    + +L   E     DAQKLFDDMP KDLVSWNSLISGFSR  CL MTL AFY +K
Sbjct: 101 DQLVTCYNKLGYAE-----DAQKLFDDMPHKDLVSWNSLISGFSR--CLHMTLTAFYTMK 160

Query: 129 FEMSIKPNEITILSMISACNEALDAGKYIHGFAVKVGVFLEVKVVNSLINMYGKYGDLQS 188
           FEMSIKPNE+TILSMISACN ALDAGKYIHGFA+KVG  LEVKV NSLINMYGK GDL S
Sbjct: 161 FEMSIKPNEVTILSMISACNGALDAGKYIHGFAIKVGGTLEVKVANSLINMYGKSGDLTS 220

Query: 189 ACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTILAVLQACEH 248
           ACRLFEA+  PNT+SWNSII AQVTNGCA++GID FNKMRR GIE DEGTILA+LQAC H
Sbjct: 221 ACRLFEAISDPNTVSWNSIIAAQVTNGCAREGIDFFNKMRRFGIEQDEGTILALLQACLH 271

[Close]

BLAST of MS026937.1 vs. ExPASy TrEMBL
Match: A0A6J1K9V7 (pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111492409 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 8.0e-70
Identity = 128/164 (78.05%), Postives = 145/164 (88.41%), Query Frame = 0


Query: 84  KDAQKLFDDMPDKDLVSWNSLISGFSRGKCLDMTLKAFYLLKFEMSIKPNEITILSMISA 143
           +DAQK+FDDMPD+DLVSWNSLI GFSR  CL +TLKAF  +KFEMS+KPNE+TILSMISA
Sbjct: 108 EDAQKVFDDMPDRDLVSWNSLICGFSR--CLHVTLKAFCTMKFEMSVKPNEVTILSMISA 167

Query: 144 CNEALDAGKYIHGFAVKVGVFLEVKVVNSLINMYGKYGDLQSACRLFEAVPYPNTISWNS 203
           CN ALD G+YIHGFA+K+GV LEVKVVNS INMYGK GDL SACRLFEA+PYPN +SWNS
Sbjct: 168 CNGALDVGRYIHGFAIKIGVSLEVKVVNSFINMYGKSGDLTSACRLFEAIPYPNIVSWNS 227

Query: 204 IIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTILAVLQACEHLG 248
           II A+VTNGCA +G+ CFNKMR  G+EPDEGTILA+LQAC HLG
Sbjct: 228 IIAARVTNGCAGEGVHCFNKMRMFGMEPDEGTILALLQACVHLG 269

[Close]

BLAST of MS026937.1 vs. TAIR 10
Match: AT5G40410.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 175.6 bits (444), Expect = 5.7e-44
Identity = 90/185 (48.65%), Postives = 126/185 (68.11%), Query Frame = 0


Query: 69  ELLHFRLQLQENSCPKDAQKLFDDMPDKDLVSWNSLISGFS----RGKCLDMTLKAFYLL 128
           +L+   L+L  + C   A+KLFD+MP++DLVSWNSLISG+S     GKC ++  +   ++
Sbjct: 71  QLVGCYLRLGHDVC---AEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSR---MM 130

Query: 129 KFEMSIKPNEITILSMISAC--NEALDAGKYIHGFAVKVGVFLEVKVVNSLINMYGKYGD 188
             E+  +PNE+T LSMISAC    + + G+ IHG  +K GV  EVKVVN+ IN YGK GD
Sbjct: 131 ISEVGFRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGD 190

Query: 189 LQSACRLFEAVPYPNTISWNSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTILAVLQA 248
           L S+C+LFE +   N +SWN++I   + NG A+KG+  FN  RR+G EPD+ T LAVL++
Sbjct: 191 LTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRS 249

[Close]

BLAST of MS026937.1 vs. TAIR 10
Match: AT1G08070.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 132.9 bits (333), Expect = 4.3e-31
Identity = 65/182 (35.71%), Postives = 118/182 (64.84%), Query Frame = 0


Query: 84  KDAQKLFDDMPDKDLVSWNSLISGFSRGKCLDMTLKAFYLLKFEMSIKPNEITILSMISA 143
           ++AQKLFD++P KD+VSWN++ISG++        L+ F  +  + +++P+E T+++++SA
Sbjct: 217 ENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM-MKTNVRPDESTMVTVVSA 276

Query: 144 CNE--ALDAGKYIHGFAVKVGVFLEVKVVNSLINMYGKYGDLQSACRLFEAVPYPNTISW 203
           C +  +++ G+ +H +    G    +K+VN+LI++Y K G+L++AC LFE +PY + ISW
Sbjct: 277 CAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISW 336

Query: 204 NSIIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTILAVLQACEHLGCKSGTIDLAPSLSL 263
           N++IG        ++ +  F +M R G  P++ T+L++L AC HL    G ID+   + +
Sbjct: 337 NTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHL----GAIDIGRWIHV 393

[Close]

BLAST of MS026937.1 vs. TAIR 10
Match: AT2G33760.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 125.6 bits (314), Expect = 6.8e-29
Identity = 60/165 (36.36%), Postives = 101/165 (61.21%), Query Frame = 0


Query: 86  AQKLFDDMPDKDLVSWNSLISGFSRGKCLDMTLKAFYLLKFEMSIKPNEITILSMISACN 145
           A+++FD MP+K +V+WNSL+SGF +    D  ++ FY ++ E   +P+  T +S++SAC 
Sbjct: 161 ARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQMR-ESGFEPDSATFVSLLSACA 220

Query: 146 E--ALDAGKYIHGFAVKVGVFLEVKVVNSLINMYGKYGDLQSACRLFEAVPYPNTISWNS 205
           +  A+  G ++H + +  G+ L VK+  +LIN+Y + GD+  A  +F+ +   N  +W +
Sbjct: 221 QTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTA 280

Query: 206 IIGAQVTNGCAQKGIDCFNKMR-RLGIEPDEGTILAVLQACEHLG 248
           +I A  T+G  Q+ ++ FNKM    G  P+  T +AVL AC H G
Sbjct: 281 MISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAG 324

[Close]

BLAST of MS026937.1 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-28
Identity = 60/176 (34.09%), Postives = 106/176 (60.23%), Query Frame = 0


Query: 86  AQKLFDDMPDKDLVSWNSLISGFSRGKCLDMTLKAFYLLKFEMSIKPNEITILSMISACN 145
           A+++ + MP KD+V+WN+LIS + +    +  L  F+ L+ + ++K N+IT++S +SAC 
Sbjct: 317 AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACA 376

Query: 146 E--ALDAGKYIHGFAVKVGVFLEVKVVNSLINMYGKYGDLQSACRLFEAVPYPNTISWNS 205
           +  AL+ G++IH +  K G+ +   V ++LI+MY K GDL+ +  +F +V   +   W++
Sbjct: 377 QVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSA 436

Query: 206 IIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTILAVLQACEHLGCKSGTIDLAPSL 260
           +IG    +GC  + +D F KM+   ++P+  T   V  AC H    +G +D A SL
Sbjct: 437 MIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSH----TGLVDEAESL 488

[Close]

BLAST of MS026937.1 vs. TAIR 10
Match: AT1G13410.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 123.6 bits (309), Expect = 2.6e-28
Identity = 58/164 (35.37%), Postives = 104/164 (63.41%), Query Frame = 0


Query: 87  QKLFDDMPDKDLVSWNSLISGFSRGKCLDMTLKAFYLLKFEMSIKPNEITILSMISACNE 146
           +++FDDMP++++ SWN LI G+++   +   L +F  +  E S+ PN+ T+  ++SAC +
Sbjct: 141 ERVFDDMPERNVFSWNGLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAK 200

Query: 147 --ALDAGKYIHGFAVKVGV-FLEVKVVNSLINMYGKYGDLQSACRLFEAVPYPNTISWNS 206
             A D GK++H +   +G   ++V V N+LI+MYGK G ++ A  +F+ +   + ISWN+
Sbjct: 201 LGAFDFGKWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKGIKRRDLISWNT 260

Query: 207 IIGAQVTNGCAQKGIDCFNKMRRLGIEPDEGTILAVLQACEHLG 248
           +I     +G   + ++ F++M+  GI PD+ T + VL AC+H+G
Sbjct: 261 MINGLAAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMG 304

The following BLAST results are available for this feature:

BLAST of MS026937.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144167.1	3.2e-89	72.11	pentatricopeptide repeat-containing protein At5g40410, mitochondrial isoform X1 ...	[more]
XP_022144168.1	3.2e-89	72.11	pentatricopeptide repeat-containing protein At5g40410, mitochondrial isoform X2 ...	[more]
XP_023546177.1	2.6e-70	79.27	pentatricopeptide repeat-containing protein At5g40410, mitochondrial isoform X1 ...	[more]
XP_008445305.2	7.4e-70	63.64	PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g...	[more]
KAA0064858.1	9.7e-70	63.64	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of MS026937.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FND6	8.0e-43	48.65	Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidop...	[more]
Q9LN01	6.0e-30	35.71	Pentatricopeptide repeat-containing protein At1g08070, chloroplastic OS=Arabidop...	[more]
P93011	9.6e-28	36.36	Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana OX...	[more]
O82380	2.1e-27	34.09	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
Q9SZT8	4.7e-27	35.59	Pentatricopeptide repeat-containing protein ELI1, chloroplastic OS=Arabidopsis t...	[more]

BLAST of MS026937.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CSK8	1.6e-89	72.11	pentatricopeptide repeat-containing protein At5g40410, mitochondrial isoform X2 ...	[more]
A0A6J1CSX2	1.6e-89	72.11	pentatricopeptide repeat-containing protein At5g40410, mitochondrial isoform X1 ...	[more]
A0A1S3BBW7	3.6e-70	63.64	LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g40410, mito...	[more]
A0A5A7VB72	4.7e-70	63.64	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1K9V7	8.0e-70	78.05	pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Cucurbit...	[more]

BLAST of MS026937.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G40410.1	5.7e-44	48.65	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G08070.1	4.3e-31	35.71	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT2G33760.1	6.8e-29	36.36	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G29760.1	1.5e-28	34.09	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G13410.1	2.6e-28	35.37	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 196..243 e-value: 2.3E-8 score: 34.1
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 199..233 e-value: 5.4E-6 score: 24.3 coord: 99..134 e-value: 0.0017 score: 16.4
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 99..123 e-value: 0.016 score: 15.4 coord: 171..191 e-value: 0.015 score: 15.5
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 197..231 score: 10.05157
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 59..151 e-value: 3.6E-12 score: 48.0 coord: 152..251 e-value: 1.1E-17 score: 66.0
None	No IPR available	PANTHER	PTHR47926	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 73..249
None	No IPR available	PANTHER	PTHR47926:SF123	PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN	coord: 73..249

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS026937	MS026937	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS026937.1-cds	MS026937.1-cds-scaffold9_2:27945..28194	CDS
MS026937.1-cds	MS026937.1-cds-scaffold9_2:28274..28762	CDS
MS026937.1-cds	MS026937.1-cds-scaffold9_2:31382..31527	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS026937.1	MS026937.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding