MS026514.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS026514.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Ubiquitin family protein
Location	scaffold5: 752406 .. 754682 (+)
Sequence length	258
RNA-Seq Expression	MS026514.1
Synteny	MS026514.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGATCTTCGTCAAAACCCTAACTGGCAAGACGATCACGCTCGAGGTCGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGTCTTTATTTACTGATTTCATTCGCTTACTGCTACTTTTTACTTTCAGCTTCTATGAATTCCTTCTCCGCCGTAAGCGACTGAGCTTTTTAGTTCAGGCGGAGGAGATTTTCTGGCATACGGATATTTGGTTGAATTTCGCCTTTGCTTTGCACGTGGTTAATGTTTCCGGCTTCTGATTAATGTTTAGTCTAATTACTTATTTAATCCATTGCTAATATCTTTGTTTTGCTGCTTGAAGAATCGTTCGATGATCGAGAGGTTGCTCTATGCCGACTCGATTTCAGTTATTTTGTTCTTGTTTATTTGTTTTATCTACTGAGGAGATGTTGTATAAACTCTGGTTTTTGATCGATACTCACTAGCATGCTTTTGTTTCGGATTTTGTGTCATTGCATGACCAATGGAAAGAAGCTTAAGAAATTGATGTTTATGATTTCATTTTGCCCGCTTTGCTATTAGGTTGAAGAGTAGGTTTTCTTTTCAAATTTGTACTTTCGTACACGTTTTCCTTTATGTATAAACCATGAAATATTTTGATGGTTTCGATCTTTATTTTGATTCTTATCGCAACGTTTACCATATTAGCTCTTCCATGGCGTGATTTTGTAATCTGTGTGTATGTTTTGTAGTTCACTTGAGTTTTCTTTCTCAAAAATTTCTTCAAAATGTTATGTCTCAATAAACTACTGTGGCAATTTGATTATTTTTTCCCGGCTGCTTAATTATTTTTAGATTTTGACTTATGAAGTGCATATTCCCTCTAGTTTCAACAGGGACAGTTAACAATTTTGGTTTTACTGGTTTGTTTATGTGTAGGACAAAGAAGGTATCCCACCTGACCAGCAAAGGTTAATTTTTGCTGGTAAGCAATTGGATGATGGTCGAACACTTGCAGATTATAACATCCAAAAGGAGTCAACCCTTCACCTGGTCTTGAGGCTCAGGGGAGGTACTATGATTAAGGTCAAGACTTTGACAGGGAAGGAAATTGAGATTGACATTGAGCCAACTGACACAATTGATCGTATCAAGGAGCGGGTTGAGGAGAAAGAAGGGATTCCTCCTGTACAGCAAAGGTATGCATTTACCATCTTCTTCAATTTCTTCAACTACAATGACAAAGTCTTTCTATAAGCATGTGTATTAGTGGATTATTTGTTTATTCTCTCTCAAATACATCAGTATGCTCTCTCTGTTTGAGAATCAAATTTGATGTGGAGTTTTCCTATGTAGACAGGGTTCATTAGTTCTTCTTGGAAAGAAACTATAAAGTTTTAAGGATTTTAGATTCCAGCATTTATTGTCATGCTTGCTTTATGTTTAAAATGTTTTAGGCATAACACAACTCAAACAATTTACGGGCACGTCTATAAATTACTTTACATGCATATTGTATTTTGACATATTTCAGGTATTTAAAGTCTTATTCTGAATAGTAAGATTTGCTTTTAGGATAAAATATAAACGAAGATGTCAGATTTACTACACTCAGAAATGCATTGTCTTATAATGAAGGTTTATTAAAGAAACCAAACCATTGACAAATACACATATCTTTTAATTATTTCATAGTCACATAAGTATGGGAATTCAAATCAAAACATGTCATAACACTATTGTCCAACGATTCAGAATCATGATGTAGATTGACAGGAGATTTTTGTAAGTTTCACATACTTGGAAAACCAACTCCATGGCTGGCGTTCAAGTATCTGTGTTTAAAATGTTATTAAATAACTTCAGAATGTCTAATACTAAATGCCTGATTGTTAGACATAGCCACCTTACTAAATTTAACGTGTCCATGATTTCTAGGCTTTCTCTAGTTGGTTTCCCATGCTCTTTCTTCTAATGTCTGTTTTATGCTCTATTATTTTCTGGAGTGGTGTTAAATGTAAAACTTATCATACTGACATAACGAGAATTAGTGGGTCAACAATTCTGAATTGCATCAAAATTCTTTCTTCTATTTCTTTTGGTCATCTATGCACATCATAAAGGAGATTTATTATCACCTAAATGGGTTAGCGTGGTTTGGTATTGCTTATGATAATAAGTACTATTTTGCAGGCTCATTTATGCCGGCAAACAGCTTGGAGATGACAAAACGGCCAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTAGTGCTCGCCCTGAGGGGTGGTTATCTGTAA

mRNA sequence

ATGCAGATCTTCGTCAAAACCCTAACTGGCAAGACGATCACGCTCGAGGTCGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGAATCGTTCGATGATCGAGAGGTTGCTCTATGCCGACTCGATTTCAGTTATTTTGCTCATTTATGCCGGCAAACAGCTTGGAGATGACAAAACGGCCAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTAGTGCTCGCCCTGAGGGGTGGTTATCTGTAA

Coding sequence (CDS)

ATGCAGATCTTCGTCAAAACCCTAACTGGCAAGACGATCACGCTCGAGGTCGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGAATCGTTCGATGATCGAGAGGTTGCTCTATGCCGACTCGATTTCAGTTATTTTGCTCATTTATGCCGGCAAACAGCTTGGAGATGACAAAACGGCCAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTAGTGCTCGCCCTGAGGGGTGGTTATCTGTAA

Protein sequence

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL

Homology

[Close]

BLAST of MS026514.1 vs. NCBI nr
Match: KAF5749247.1 (hypothetical protein HS088_TW04G01212 [Tripterygium wilfordii])

HSP 1 Score: 121.3 bits (303), Expect = 4.0e-24
Identity = 65/85 (76.47%), Postives = 72/85 (84.71%), Query Frame = 0


Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDD 60
          MQIFVKTLTGKTITLEVESSDT+DNVKAKIQ+   +E L + +    + LIYAGKQL DD
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTVDNVKAKIQSLHELEELCFRN--CGLGLIYAGKQLADD 60

Query: 61 KTAKDYNIEGGSVLHLVLALRGGYL 86
          KTA+DYNIEGGSVLHLVLALRGG L
Sbjct: 61 KTARDYNIEGGSVLHLVLALRGGSL 83

[Close]

BLAST of MS026514.1 vs. NCBI nr
Match: RLM56215.1 (hypothetical protein C2845_PM10G17510 [Panicum miliaceum])

HSP 1 Score: 120.6 bits (301), Expect = 6.8e-24
Identity = 68/91 (74.73%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ--NRSMIERLLYADSISVIL------LIY 60
          MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ  NR+ +   ++  S++  L      LIY
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQIFNRNCVPAGVFECSVARCLRHQYFRLIY 60

Query: 61 AGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 84
          AGKQL DDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 61 AGKQLADDKTAKDYNIEGGSVLHLVLALRGG 91

[Close]

BLAST of MS026514.1 vs. NCBI nr
Match: RLN11761.1 (hypothetical protein C2845_PM09G20060 [Panicum miliaceum])

HSP 1 Score: 120.2 bits (300), Expect = 8.8e-24
Identity = 67/88 (76.14%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ--NRSMIERLLYADSISVIL---LIYAGK 60
          MQIFVKTLTGKTITL+VESSDTIDNVKAKIQ  NR+ +   ++  S++  L   LIYAGK
Sbjct: 1  MQIFVKTLTGKTITLDVESSDTIDNVKAKIQISNRNHVPAGVFECSVAWCLRHMLIYAGK 60

Query: 61 QLGDDKTAKDYNIEGGSVLHLVLALRGG 84
          QL DDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 61 QLADDKTAKDYNIEGGSVLHLVLALRGG 88

[Close]

BLAST of MS026514.1 vs. NCBI nr
Match: KAG6387884.1 (hypothetical protein SASPL_153079 [Salvia splendens])

HSP 1 Score: 115.9 bits (289), Expect = 1.7e-22
Identity = 68/103 (66.02%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMI------------------ERLLYA 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ +++                   ER+   
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQVKTLTGKEIEIDIEPTDTIDRIKERVEEK 60

Query: 61  DSISVI--LLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 84
           + I  +   LIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 61  EGIPPVQQRLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 103

[Close]

BLAST of MS026514.1 vs. NCBI nr
Match: EYU29190.1 (hypothetical protein MIMGU_mgv1a015494mg [Erythranthe guttata])

HSP 1 Score: 114.8 bits (286), Expect = 3.7e-22
Identity = 71/113 (62.83%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMI----ERLLYA-----------DSI 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I    +RL++A           D+I
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKEIEIDIEPNDTI 60

Query: 61  SVI---------------LLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 84
             I                LIYAGKQL DDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 61  DRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 113

[Close]

BLAST of MS026514.1 vs. ExPASy Swiss-Prot
Match: P0CG85 (Polyubiquitin OS=Nicotiana sylvestris OX=4096 GN=UBI11 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-19
Identity = 55/84 (65.48%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDD 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D 
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQLEDG 440

Query: 61  KTAKDYNIEGGSVLHLVLALRGGY 85
           +T  DYNI+  S LHLVL LRGG+
Sbjct: 441 RTLADYNIQKESTLHLVLRLRGGF 457

[Close]

BLAST of MS026514.1 vs. ExPASy Swiss-Prot
Match: P0CG84 (Polyubiquitin (Fragment) OS=Nicotiana sylvestris OX=4096 GN=UBI4 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-19
Identity = 55/84 (65.48%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDD 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D 
Sbjct: 301 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQLEDG 360

Query: 61  KTAKDYNIEGGSVLHLVLALRGGY 85
           +T  DYNI+  S LHLVL LRGG+
Sbjct: 361 RTLADYNIQKESTLHLVLRLRGGF 377

[Close]

BLAST of MS026514.1 vs. ExPASy Swiss-Prot
Match: P69322 (Polyubiquitin OS=Pisum sativum OX=3888 GN=PU1 PE=2 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-19
Identity = 55/84 (65.48%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDD 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D 
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQLEDG 364

Query: 61  KTAKDYNIEGGSVLHLVLALRGGY 85
           +T  DYNI+  S LHLVL LRGG+
Sbjct: 365 RTLADYNIQKESTLHLVLRLRGGF 381

[Close]

BLAST of MS026514.1 vs. ExPASy Swiss-Prot
Match: P69325 (Polyubiquitin OS=Glycine max OX=3847 GN=SUBI-1 PE=2 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-19
Identity = 55/84 (65.48%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDD 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D 
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQLEDG 288

Query: 61  KTAKDYNIEGGSVLHLVLALRGGY 85
           +T  DYNI+  S LHLVL LRGG+
Sbjct: 289 RTLADYNIQKESTLHLVLRLRGGF 305

[Close]

BLAST of MS026514.1 vs. ExPASy Swiss-Prot
Match: P69313 (Ubiquitin OS=Helianthus annuus OX=4232 PE=3 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-19
Identity = 55/84 (65.48%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDD 60
          MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D 
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQLEDG 60

Query: 61 KTAKDYNIEGGSVLHLVLALRGGY 85
          +T  DYNI+  S LHLVL LRGG+
Sbjct: 61 RTLADYNIQKESTLHLVLRLRGGF 77

[Close]

BLAST of MS026514.1 vs. ExPASy TrEMBL
Match: R7W7L9 (Ubiquitin-like domain-containing protein OS=Aegilops tauschii OX=37682 GN=F775_43916 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 8.6e-25
Identity = 68/87 (78.16%), Postives = 73/87 (83.91%), Query Frame = 0


Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMI----ERLLYADSISVILLIYAGKQ 60
          MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I    +RL++A       LIYAGKQ
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK----QLIYAGKQ 60

Query: 61 LGDDKTAKDYNIEGGSVLHLVLALRGG 84
          L DDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 61 LADDKTAKDYNIEGGSVLHLVLALRGG 83

[Close]

BLAST of MS026514.1 vs. ExPASy TrEMBL
Match: A0A7J7DSH1 (Ubiquitin-like domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW04G01212 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.9e-24
Identity = 65/85 (76.47%), Postives = 72/85 (84.71%), Query Frame = 0


Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDD 60
          MQIFVKTLTGKTITLEVESSDT+DNVKAKIQ+   +E L + +    + LIYAGKQL DD
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTVDNVKAKIQSLHELEELCFRN--CGLGLIYAGKQLADD 60

Query: 61 KTAKDYNIEGGSVLHLVLALRGGYL 86
          KTA+DYNIEGGSVLHLVLALRGG L
Sbjct: 61 KTARDYNIEGGSVLHLVLALRGGSL 83

[Close]

BLAST of MS026514.1 vs. ExPASy TrEMBL
Match: A0A3L6PJN4 (Ubiquitin-like domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM10G17510 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.3e-24
Identity = 68/91 (74.73%), Postives = 74/91 (81.32%), Query Frame = 0


Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ--NRSMIERLLYADSISVIL------LIY 60
          MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ  NR+ +   ++  S++  L      LIY
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQIFNRNCVPAGVFECSVARCLRHQYFRLIY 60

Query: 61 AGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 84
          AGKQL DDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 61 AGKQLADDKTAKDYNIEGGSVLHLVLALRGG 91

[Close]

BLAST of MS026514.1 vs. ExPASy TrEMBL
Match: A0A3L6RXW9 (Ubiquitin-like domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM09G20060 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.3e-24
Identity = 67/88 (76.14%), Postives = 74/88 (84.09%), Query Frame = 0


Query: 1  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ--NRSMIERLLYADSISVIL---LIYAGK 60
          MQIFVKTLTGKTITL+VESSDTIDNVKAKIQ  NR+ +   ++  S++  L   LIYAGK
Sbjct: 1  MQIFVKTLTGKTITLDVESSDTIDNVKAKIQISNRNHVPAGVFECSVAWCLRHMLIYAGK 60

Query: 61 QLGDDKTAKDYNIEGGSVLHLVLALRGG 84
          QL DDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 61 QLADDKTAKDYNIEGGSVLHLVLALRGG 88

[Close]

BLAST of MS026514.1 vs. ExPASy TrEMBL
Match: A0A022QRQ2 (Ubiquitin-like domain-containing protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a015494mg PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.8e-22
Identity = 71/113 (62.83%), Postives = 77/113 (68.14%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMI----ERLLYA-----------DSI 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I    +RL++A           D+I
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKEIEIDIEPNDTI 60

Query: 61  SVI---------------LLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGG 84
             I                LIYAGKQL DDKTAKDYNIEGGSVLHLVLALRGG
Sbjct: 61  DRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 113

[Close]

BLAST of MS026514.1 vs. TAIR 10
Match: AT4G05320.2 (polyubiquitin 10 )

HSP 1 Score: 96.7 bits (239), Expect = 9.8e-21
Identity = 55/84 (65.48%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDD 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D 
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQLEDG 440

Query: 61  KTAKDYNIEGGSVLHLVLALRGGY 85
           +T  DYNI+  S LHLVL LRGG+
Sbjct: 441 RTLADYNIQKESTLHLVLRLRGGF 457

[Close]

BLAST of MS026514.1 vs. TAIR 10
Match: AT4G02890.1 (Ubiquitin family protein )

HSP 1 Score: 96.7 bits (239), Expect = 9.8e-21
Identity = 55/84 (65.48%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDD 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D 
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQLEDG 212

Query: 61  KTAKDYNIEGGSVLHLVLALRGGY 85
           +T  DYNI+  S LHLVL LRGG+
Sbjct: 213 RTLADYNIQKESTLHLVLRLRGGF 229

[Close]

BLAST of MS026514.1 vs. TAIR 10
Match: AT4G05050.1 (ubiquitin 11 )

HSP 1 Score: 96.7 bits (239), Expect = 9.8e-21
Identity = 55/84 (65.48%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDD 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D 
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQLEDG 212

Query: 61  KTAKDYNIEGGSVLHLVLALRGGY 85
           +T  DYNI+  S LHLVL LRGG+
Sbjct: 213 RTLADYNIQKESTLHLVLRLRGGF 229

[Close]

BLAST of MS026514.1 vs. TAIR 10
Match: AT4G05320.3 (polyubiquitin 10 )

HSP 1 Score: 96.7 bits (239), Expect = 9.8e-21
Identity = 55/84 (65.48%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDD 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D 
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQLEDG 364

Query: 61  KTAKDYNIEGGSVLHLVLALRGGY 85
           +T  DYNI+  S LHLVL LRGG+
Sbjct: 365 RTLADYNIQKESTLHLVLRLRGGF 381

[Close]

BLAST of MS026514.1 vs. TAIR 10
Match: AT4G05320.4 (polyubiquitin 10 )

HSP 1 Score: 96.7 bits (239), Expect = 9.8e-21
Identity = 55/84 (65.48%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQNRSMIERLLYADSISVILLIYAGKQLGDD 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQ++  I             LI+AGKQL D 
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-------DQQRLIFAGKQLEDG 440

Query: 61  KTAKDYNIEGGSVLHLVLALRGGY 85
           +T  DYNI+  S LHLVL LRGG+
Sbjct: 441 RTLADYNIQKESTLHLVLRLRGGF 457

The following BLAST results are available for this feature:

BLAST of MS026514.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5749247.1	4.0e-24	76.47	hypothetical protein HS088_TW04G01212 [Tripterygium wilfordii]	[more]
RLM56215.1	6.8e-24	74.73	hypothetical protein C2845_PM10G17510 [Panicum miliaceum]	[more]
RLN11761.1	8.8e-24	76.14	hypothetical protein C2845_PM09G20060 [Panicum miliaceum]	[more]
KAG6387884.1	1.7e-22	66.02	hypothetical protein SASPL_153079 [Salvia splendens]	[more]
EYU29190.1	3.7e-22	62.83	hypothetical protein MIMGU_mgv1a015494mg [Erythranthe guttata]	[more]

BLAST of MS026514.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CG85	1.4e-19	65.48	Polyubiquitin OS=Nicotiana sylvestris OX=4096 GN=UBI11 PE=2 SV=1	[more]
P0CG84	1.4e-19	65.48	Polyubiquitin (Fragment) OS=Nicotiana sylvestris OX=4096 GN=UBI4 PE=2 SV=1	[more]
P69322	1.4e-19	65.48	Polyubiquitin OS=Pisum sativum OX=3888 GN=PU1 PE=2 SV=2	[more]
P69325	1.4e-19	65.48	Polyubiquitin OS=Glycine max OX=3847 GN=SUBI-1 PE=2 SV=2	[more]
P69313	1.4e-19	65.48	Ubiquitin OS=Helianthus annuus OX=4232 PE=3 SV=2	[more]

BLAST of MS026514.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
R7W7L9	8.6e-25	78.16	Ubiquitin-like domain-containing protein OS=Aegilops tauschii OX=37682 GN=F775_4...	[more]
A0A7J7DSH1	1.9e-24	76.47	Ubiquitin-like domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=...	[more]
A0A3L6PJN4	3.3e-24	74.73	Ubiquitin-like domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_P...	[more]
A0A3L6RXW9	4.3e-24	76.14	Ubiquitin-like domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_P...	[more]
A0A022QRQ2	1.8e-22	62.83	Ubiquitin-like domain-containing protein OS=Erythranthe guttata OX=4155 GN=MIMGU...	[more]

BLAST of MS026514.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G05320.2	9.8e-21	65.48	polyubiquitin 10	[more]
AT4G02890.1	9.8e-21	65.48	Ubiquitin family protein	[more]
AT4G05050.1	9.8e-21	65.48	ubiquitin 11	[more]
AT4G05320.3	9.8e-21	65.48	polyubiquitin 10	[more]
AT4G05320.4	9.8e-21	65.48	polyubiquitin 10	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 1..79 e-value: 1.2E-18 score: 78.0
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 3..81 e-value: 6.4E-21 score: 73.9
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 1..83 score: 19.999914
None	No IPR available	GENE3D	3.10.20.90		coord: 1..84 e-value: 1.9E-31 score: 109.9
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 1..83
None	No IPR available	PANTHER	PTHR10666:SF364	SUBFAMILY NOT NAMED	coord: 1..83
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 1..83

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS026514	MS026514	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS026514.1-cds	MS026514.1-cds-scaffold5:752406..752498	CDS
MS026514.1-cds	MS026514.1-cds-scaffold5:752739..752791	CDS
MS026514.1-cds	MS026514.1-cds-scaffold5:754571..754682	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS026514.1	MS026514.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding