MS026434.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS026434.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Rho_N domain-containing protein
Location	scaffold402: 2338919 .. 2340042 (+)
Sequence length	810
RNA-Seq Expression	MS026434.1
Synteny	MS026434.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGTTTGGATATTCCAAGAACTGCATTTTTCCGGGAAAATCAGATGGAGGCAGTAGTTTTCCAGTCTCGAACTCTACGCTTTCCCAATTTGGTCTCTTTTGGAAGGAGACCCATTTTCGCTTTGAAAGGTATGGCCTATGGGGCTTCTTCTTCCTTGCCTTCCCCATTCCCACAAAACCCATCTTCTTAAATTGAACAACTTCTGTTGCAGCTGTGCCCGAGGGCTAAATCTTGTGTGGTTCACAAGCTGAGGGATTAATTTTTGATGCAGCTTGTTAAATTTGGCAGAGATTGCAGCTGTGAATTCTAGCAAGGGAATTCAAGTATCTGTTACGAGCAATGGGGGTGGAAATGCAGGGCAACGGCCTCCCCGTAGAAGTTCTGGGCCAGGAAGGACCAGAAAGAATGAACCCAATAGAAACGAGGCAGCTGAAGACCTAAAAAATCCCAAATCAAATAACCAGGAGGAGATAATTGCTCTCTTCAGAAAGATTCAGACTTCCATTGCCAAGGACTCTGCAACCACCAAAGATGAAGATTCCCACGAGGATGAGATTGGAGCCGAGTCTATTTTGGAGAGTCTTCGTGAATCAAGGAAGCAAGTCAAAGGTAATTTCTTGGTTGTCTCATCTCATCTCATCTGATGCTTTTGAGGGAAATTTGTCCCACATTTCAAAACCCATGAATGAATCTCGCAAGAACAAAATTCAAGTTATGATTAACGAATTTCTATCTCCCATATCTTTATTAATTAAATCAACACATTGGAGGCAATGGCAGGCAGAACTTCAAAGAAGGCAGGAGTTAAAGTGTTGAGAAGAAAGGGCATCTCTGAAGAGCCGGAAATGTATCATACTTCGCCAGCAGCAGAATTCAAGTTAGTTCGACCACCATCTAAATTCGTGAAGAGATCACCAATCCCATCTCCCCCAGGAAGAAATGGTTCACGATCACAGCTTAGGGAGGAGCCTTCTCAGGCCATAGCTGAAAGCAGGGAAATGAAGTTCCCAAGTGTAGAGAATATGAAACTTACCGAGCTGAAAGCAGTAGCAAAATCTAGAGGAATTAAGGGTTATTCCAAATTGAAGAAAAATGAGCTCCTGGAACTTCTGAGATCCTAA

mRNA sequence

ATGCAGTTTGGATATTCCAAGAACTGCATTTTTCCGGGAAAATCAGATGGAGGCAGTAGTTTTCCAGTCTCGAACTCTACGCTTTCCCAATTTGGTCTCTTTTGGAAGGAGACCCATTTTCGCTTTGAAAGCTTGTTAAATTTGGCAGAGATTGCAGCTGTGAATTCTAGCAAGGGAATTCAAGTATCTGTTACGAGCAATGGGGGTGGAAATGCAGGGCAACGGCCTCCCCGTAGAAGTTCTGGGCCAGGAAGGACCAGAAAGAATGAACCCAATAGAAACGAGGCAGCTGAAGACCTAAAAAATCCCAAATCAAATAACCAGGAGGAGATAATTGCTCTCTTCAGAAAGATTCAGACTTCCATTGCCAAGGACTCTGCAACCACCAAAGATGAAGATTCCCACGAGGATGAGATTGGAGCCGAGTCTATTTTGGAGAGTCTTCGTGAATCAAGGAAGCAAGTCAAAGGCAGAACTTCAAAGAAGGCAGGAGTTAAAGTGTTGAGAAGAAAGGGCATCTCTGAAGAGCCGGAAATGTATCATACTTCGCCAGCAGCAGAATTCAAGTTAGTTCGACCACCATCTAAATTCGTGAAGAGATCACCAATCCCATCTCCCCCAGGAAGAAATGGTTCACGATCACAGCTTAGGGAGGAGCCTTCTCAGGCCATAGCTGAAAGCAGGGAAATGAAGTTCCCAAGTGTAGAGAATATGAAACTTACCGAGCTGAAAGCAGTAGCAAAATCTAGAGGAATTAAGGGTTATTCCAAATTGAAGAAAAATGAGCTCCTGGAACTTCTGAGATCCTAA

Coding sequence (CDS)

ATGCAGTTTGGATATTCCAAGAACTGCATTTTTCCGGGAAAATCAGATGGAGGCAGTAGTTTTCCAGTCTCGAACTCTACGCTTTCCCAATTTGGTCTCTTTTGGAAGGAGACCCATTTTCGCTTTGAAAGCTTGTTAAATTTGGCAGAGATTGCAGCTGTGAATTCTAGCAAGGGAATTCAAGTATCTGTTACGAGCAATGGGGGTGGAAATGCAGGGCAACGGCCTCCCCGTAGAAGTTCTGGGCCAGGAAGGACCAGAAAGAATGAACCCAATAGAAACGAGGCAGCTGAAGACCTAAAAAATCCCAAATCAAATAACCAGGAGGAGATAATTGCTCTCTTCAGAAAGATTCAGACTTCCATTGCCAAGGACTCTGCAACCACCAAAGATGAAGATTCCCACGAGGATGAGATTGGAGCCGAGTCTATTTTGGAGAGTCTTCGTGAATCAAGGAAGCAAGTCAAAGGCAGAACTTCAAAGAAGGCAGGAGTTAAAGTGTTGAGAAGAAAGGGCATCTCTGAAGAGCCGGAAATGTATCATACTTCGCCAGCAGCAGAATTCAAGTTAGTTCGACCACCATCTAAATTCGTGAAGAGATCACCAATCCCATCTCCCCCAGGAAGAAATGGTTCACGATCACAGCTTAGGGAGGAGCCTTCTCAGGCCATAGCTGAAAGCAGGGAAATGAAGTTCCCAAGTGTAGAGAATATGAAACTTACCGAGCTGAAAGCAGTAGCAAAATCTAGAGGAATTAAGGGTTATTCCAAATTGAAGAAAAATGAGCTCCTGGAACTTCTGAGATCCTAA

Protein sequence

MQFGYSKNCIFPGKSDGGSSFPVSNSTLSQFGLFWKETHFRFESLLNLAEIAAVNSSKGIQVSVTSNGGGNAGQRPPRRSSGPGRTRKNEPNRNEAAEDLKNPKSNNQEEIIALFRKIQTSIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGISEEPEMYHTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPSVENMKLTELKAVAKSRGIKGYSKLKKNELLELLRS

Homology

[Close]

BLAST of MS026434.1 vs. NCBI nr
Match: XP_022139842.1 (uncharacterized protein LOC111010657 isoform X1 [Momordica charantia])

HSP 1 Score: 502.3 bits (1292), Expect = 2.6e-138
Identity = 268/269 (99.63%), Postives = 268/269 (99.63%), Query Frame = 0


Query: 1   MQFGYSKNCIFPGKSDGGSSFPVSNSTLSQFGLFWKETHFRFESLLNLAEIAAVNSSKGI 60
           MQFGYSKNCIF GKSDGGSSFPVSNSTLSQFGLFWKETHFRFESLLNLAEIAAVNSSKGI
Sbjct: 1   MQFGYSKNCIFQGKSDGGSSFPVSNSTLSQFGLFWKETHFRFESLLNLAEIAAVNSSKGI 60

Query: 61  QVSVTSNGGGNAGQRPPRRSSGPGRTRKNEPNRNEAAEDLKNPKSNNQEEIIALFRKIQT 120
           QVSVTSNGGGNAGQRPPRRSSGPGRTRKNEPNRNEAAEDLKNPKSNNQEEIIALFRKIQT
Sbjct: 61  QVSVTSNGGGNAGQRPPRRSSGPGRTRKNEPNRNEAAEDLKNPKSNNQEEIIALFRKIQT 120

Query: 121 SIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGISEEPEMY 180
           SIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGISEEPEMY
Sbjct: 121 SIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGISEEPEMY 180

Query: 181 HTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPSVENMKL 240
           HTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPSVENMKL
Sbjct: 181 HTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPSVENMKL 240

Query: 241 TELKAVAKSRGIKGYSKLKKNELLELLRS 270
           TELKAVAKSRGIKGYSKLKKNELLELLRS
Sbjct: 241 TELKAVAKSRGIKGYSKLKKNELLELLRS 269

[Close]

BLAST of MS026434.1 vs. NCBI nr
Match: XP_022139843.1 (uncharacterized protein LOC111010657 isoform X2 [Momordica charantia])

HSP 1 Score: 405.2 bits (1040), Expect = 4.4e-109
Identity = 221/222 (99.55%), Postives = 221/222 (99.55%), Query Frame = 0


Query: 48  LAEIAAVNSSKGIQVSVTSNGGGNAGQRPPRRSSGPGRTRKNEPNRNEAAEDLKNPKSNN 107
           L EIAAVNSSKGIQVSVTSNGGGNAGQRPPRRSSGPGRTRKNEPNRNEAAEDLKNPKSNN
Sbjct: 27  LKEIAAVNSSKGIQVSVTSNGGGNAGQRPPRRSSGPGRTRKNEPNRNEAAEDLKNPKSNN 86

Query: 108 QEEIIALFRKIQTSIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKV 167
           QEEIIALFRKIQTSIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKV
Sbjct: 87  QEEIIALFRKIQTSIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKV 146

Query: 168 LRRKGISEEPEMYHTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAES 227
           LRRKGISEEPEMYHTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAES
Sbjct: 147 LRRKGISEEPEMYHTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAES 206

Query: 228 REMKFPSVENMKLTELKAVAKSRGIKGYSKLKKNELLELLRS 270
           REMKFPSVENMKLTELKAVAKSRGIKGYSKLKKNELLELLRS
Sbjct: 207 REMKFPSVENMKLTELKAVAKSRGIKGYSKLKKNELLELLRS 248

[Close]

BLAST of MS026434.1 vs. NCBI nr
Match: XP_008446702.1 (PREDICTED: SAP-like protein BP-73 [Cucumis melo] >KAA0057053.1 SAP-like protein BP-73 [Cucumis melo var. makuwa])

HSP 1 Score: 288.1 bits (736), Expect = 7.8e-74
Identity = 178/266 (66.92%), Postives = 208/266 (78.20%), Query Frame = 0


Query: 13  GKSDGGSSFPVSNST-LSQFGLFWKETHFRFESLLNLAEIAAVNSSKGIQVSVTSN-GGG 72
           GKSDG SSFP S S  LSQF LF K+TH RFESLLNLA+IA V  SK IQ+SV++N   G
Sbjct: 20  GKSDGSSSFPASYSNPLSQFNLFEKKTHVRFESLLNLADIADVYPSKNIQLSVSNNRPDG 79

Query: 73  NAGQRPPRRSSGPGRTRKNEPN--RNEA---AEDLKNPKSNNQEEIIALFRKIQTSIAKD 132
           NA  RPPRR+S PG+TRK+E +  + EA    E++K  K N+QEEIIALFRKIQ SIAK+
Sbjct: 80  NARNRPPRRNSLPGKTRKSESSSRKKEAPKNEENIKKSKPNDQEEIIALFRKIQASIAKE 139

Query: 133 SATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGISEEPEMYHTS-- 192
           SA++ DE+SH+DE GA SILE+LRE RKQ+KG+TSKKAG KV R KG SEE EM+  S  
Sbjct: 140 SASSIDEESHKDEHGATSILETLREPRKQLKGKTSKKAGAKVFRSKGTSEEKEMHDPSPP 199

Query: 193 PAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPSVENMKLTEL 252
           PAA+FKLVRPPSKFVKRSPIP            + + SQAIAESRE+KFPS+ENMKL EL
Sbjct: 200 PAADFKLVRPPSKFVKRSPIPP-----------KVDASQAIAESRELKFPSIENMKLAEL 259

Query: 253 KAVAKSRGIKGYSKLKKNELLELLRS 270
           KA+AKSRGIKGYSKLKKNEL+E+LRS
Sbjct: 260 KALAKSRGIKGYSKLKKNELMEILRS 274

[Close]

BLAST of MS026434.1 vs. NCBI nr
Match: XP_011648505.1 (uncharacterized protein LOC105434499, partial [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 2.1e-71
Identity = 174/265 (65.66%), Postives = 204/265 (76.98%), Query Frame = 0


Query: 14  KSDGGSSFPVSNST-LSQFGLFWKETHFRFESLLNLAEIAAVNSSKGIQVSVT-SNGGGN 73
           KSDG SSFP SNS   SQF LF K+TH RFESLLNLA++A V  SK IQ SV+ S   GN
Sbjct: 14  KSDGSSSFPASNSNPFSQFNLFEKKTHVRFESLLNLADVADVYPSKNIQPSVSKSRPDGN 73

Query: 74  AGQRPPRRSSGPGRTRKNEPNRNEA-----AEDLKNPKSNNQEEIIALFRKIQTSIAKDS 133
           AG RPPRR+S PG+ RK+E +  +       E +K  ++N+QEE+IALFRKIQTSIAK+S
Sbjct: 74  AGNRPPRRNSLPGKARKSESSSRKTETPKDEESVKKSETNDQEEVIALFRKIQTSIAKES 133

Query: 134 ATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGISEEPEMYHTS--P 193
           A++ DE+S +DE    SILE+LRESRKQ+KG+TSKKAG KVLR KG SEE EM+  S  P
Sbjct: 134 ASSIDEESRKDE--NASILETLRESRKQLKGKTSKKAGAKVLRSKGKSEEKEMHDPSPPP 193

Query: 194 AAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPSVENMKLTELK 253
           AA+FKLVRPPSKFVKRSPIP           L+ + SQAIAESRE+KFPS ENMKLTELK
Sbjct: 194 AADFKLVRPPSKFVKRSPIP-----------LKVDASQAIAESRELKFPSTENMKLTELK 253

Query: 254 AVAKSRGIKGYSKLKKNELLELLRS 270
           A+AKSRGIKGYSKLKKNEL+E+LRS
Sbjct: 254 ALAKSRGIKGYSKLKKNELMEILRS 265

[Close]

BLAST of MS026434.1 vs. NCBI nr
Match: XP_038893911.1 (SAP-like protein BP-73 isoform X2 [Benincasa hispida])

HSP 1 Score: 270.4 bits (690), Expect = 1.7e-68
Identity = 164/233 (70.39%), Postives = 193/233 (82.83%), Query Frame = 0


Query: 44  SLLNLAEIAAVNSSKGIQVSVTSN-GGGNAGQRPPRRSSGPGRTRKNEPN--RNEA---A 103
           +LLNLA+IA V  SKGIQ+SV++N   G AG RPPRR S PG+TRKNEP+  + EA    
Sbjct: 45  NLLNLADIADVYPSKGIQLSVSNNRPDGKAGNRPPRRISAPGKTRKNEPSSRKTEAHMNE 104

Query: 104 EDLKNPKSNNQEEIIALFRKIQTSIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKG 163
           EDLK  K NNQEEIIALFRKI+TSIAK+SA++ DE+S +DE GAESILE+LRESRKQVKG
Sbjct: 105 EDLKKSKYNNQEEIIALFRKIETSIAKESASSNDEESCKDEHGAESILETLRESRKQVKG 164

Query: 164 RTSKKAGVKVLRRKGISEEPEMYHTS-PAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQL 223
           ++SKKAG K LR +G SEE E++  S PAA+F+LVRPPSKFVKRSPIPSPP  NGS    
Sbjct: 165 KSSKKAGAKALRSEGTSEEKEIHDPSPPAADFQLVRPPSKFVKRSPIPSPPRGNGSHP-- 224

Query: 224 REEPSQAIAESREMKFPSVENMKLTELKAVAKSRGIKGYSKLKKNELLELLRS 270
           R + +QAIAESRE+KFPS++NMKLTELKA+AKSRGIKGYSKLKKNEL+ELL S
Sbjct: 225 RVDATQAIAESRELKFPSIKNMKLTELKALAKSRGIKGYSKLKKNELIELLGS 275

[Close]

BLAST of MS026434.1 vs. ExPASy Swiss-Prot
Match: Q8L4E7 (SAP-like protein BP-73 OS=Oryza sativa subsp. japonica OX=39947 GN=BP-73 PE=1 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.6e-05
Identity = 23/35 (65.71%), Postives = 31/35 (88.57%), Query Frame = 0


Query: 233 PSVENMKLTELKAVAKSRGIKGYSKLKKNELLELL 268
           P +  +K+TEL+ +AKSRGIKGYSK+KKN+L+ELL
Sbjct: 337 PDLSTLKVTELRELAKSRGIKGYSKMKKNDLVELL 371

[Close]

BLAST of MS026434.1 vs. ExPASy TrEMBL
Match: A0A6J1CF22 (uncharacterized protein LOC111010657 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010657 PE=4 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 1.3e-138
Identity = 268/269 (99.63%), Postives = 268/269 (99.63%), Query Frame = 0


Query: 1   MQFGYSKNCIFPGKSDGGSSFPVSNSTLSQFGLFWKETHFRFESLLNLAEIAAVNSSKGI 60
           MQFGYSKNCIF GKSDGGSSFPVSNSTLSQFGLFWKETHFRFESLLNLAEIAAVNSSKGI
Sbjct: 1   MQFGYSKNCIFQGKSDGGSSFPVSNSTLSQFGLFWKETHFRFESLLNLAEIAAVNSSKGI 60

Query: 61  QVSVTSNGGGNAGQRPPRRSSGPGRTRKNEPNRNEAAEDLKNPKSNNQEEIIALFRKIQT 120
           QVSVTSNGGGNAGQRPPRRSSGPGRTRKNEPNRNEAAEDLKNPKSNNQEEIIALFRKIQT
Sbjct: 61  QVSVTSNGGGNAGQRPPRRSSGPGRTRKNEPNRNEAAEDLKNPKSNNQEEIIALFRKIQT 120

Query: 121 SIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGISEEPEMY 180
           SIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGISEEPEMY
Sbjct: 121 SIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGISEEPEMY 180

Query: 181 HTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPSVENMKL 240
           HTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPSVENMKL
Sbjct: 181 HTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPSVENMKL 240

Query: 241 TELKAVAKSRGIKGYSKLKKNELLELLRS 270
           TELKAVAKSRGIKGYSKLKKNELLELLRS
Sbjct: 241 TELKAVAKSRGIKGYSKLKKNELLELLRS 269

[Close]

BLAST of MS026434.1 vs. ExPASy TrEMBL
Match: A0A6J1CGN3 (uncharacterized protein LOC111010657 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010657 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 2.1e-109
Identity = 221/222 (99.55%), Postives = 221/222 (99.55%), Query Frame = 0


Query: 48  LAEIAAVNSSKGIQVSVTSNGGGNAGQRPPRRSSGPGRTRKNEPNRNEAAEDLKNPKSNN 107
           L EIAAVNSSKGIQVSVTSNGGGNAGQRPPRRSSGPGRTRKNEPNRNEAAEDLKNPKSNN
Sbjct: 27  LKEIAAVNSSKGIQVSVTSNGGGNAGQRPPRRSSGPGRTRKNEPNRNEAAEDLKNPKSNN 86

Query: 108 QEEIIALFRKIQTSIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKV 167
           QEEIIALFRKIQTSIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKV
Sbjct: 87  QEEIIALFRKIQTSIAKDSATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKV 146

Query: 168 LRRKGISEEPEMYHTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAES 227
           LRRKGISEEPEMYHTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAES
Sbjct: 147 LRRKGISEEPEMYHTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAES 206

Query: 228 REMKFPSVENMKLTELKAVAKSRGIKGYSKLKKNELLELLRS 270
           REMKFPSVENMKLTELKAVAKSRGIKGYSKLKKNELLELLRS
Sbjct: 207 REMKFPSVENMKLTELKAVAKSRGIKGYSKLKKNELLELLRS 248

[Close]

BLAST of MS026434.1 vs. ExPASy TrEMBL
Match: A0A5A7UMB7 (SAP-like protein BP-73 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002410 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 3.8e-74
Identity = 178/266 (66.92%), Postives = 208/266 (78.20%), Query Frame = 0


Query: 13  GKSDGGSSFPVSNST-LSQFGLFWKETHFRFESLLNLAEIAAVNSSKGIQVSVTSN-GGG 72
           GKSDG SSFP S S  LSQF LF K+TH RFESLLNLA+IA V  SK IQ+SV++N   G
Sbjct: 20  GKSDGSSSFPASYSNPLSQFNLFEKKTHVRFESLLNLADIADVYPSKNIQLSVSNNRPDG 79

Query: 73  NAGQRPPRRSSGPGRTRKNEPN--RNEA---AEDLKNPKSNNQEEIIALFRKIQTSIAKD 132
           NA  RPPRR+S PG+TRK+E +  + EA    E++K  K N+QEEIIALFRKIQ SIAK+
Sbjct: 80  NARNRPPRRNSLPGKTRKSESSSRKKEAPKNEENIKKSKPNDQEEIIALFRKIQASIAKE 139

Query: 133 SATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGISEEPEMYHTS-- 192
           SA++ DE+SH+DE GA SILE+LRE RKQ+KG+TSKKAG KV R KG SEE EM+  S  
Sbjct: 140 SASSIDEESHKDEHGATSILETLREPRKQLKGKTSKKAGAKVFRSKGTSEEKEMHDPSPP 199

Query: 193 PAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPSVENMKLTEL 252
           PAA+FKLVRPPSKFVKRSPIP            + + SQAIAESRE+KFPS+ENMKL EL
Sbjct: 200 PAADFKLVRPPSKFVKRSPIPP-----------KVDASQAIAESRELKFPSIENMKLAEL 259

Query: 253 KAVAKSRGIKGYSKLKKNELLELLRS 270
           KA+AKSRGIKGYSKLKKNEL+E+LRS
Sbjct: 260 KALAKSRGIKGYSKLKKNELMEILRS 274

[Close]

BLAST of MS026434.1 vs. ExPASy TrEMBL
Match: A0A1S3BFQ9 (SAP-like protein BP-73 OS=Cucumis melo OX=3656 GN=LOC103489342 PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 3.8e-74
Identity = 178/266 (66.92%), Postives = 208/266 (78.20%), Query Frame = 0


Query: 13  GKSDGGSSFPVSNST-LSQFGLFWKETHFRFESLLNLAEIAAVNSSKGIQVSVTSN-GGG 72
           GKSDG SSFP S S  LSQF LF K+TH RFESLLNLA+IA V  SK IQ+SV++N   G
Sbjct: 20  GKSDGSSSFPASYSNPLSQFNLFEKKTHVRFESLLNLADIADVYPSKNIQLSVSNNRPDG 79

Query: 73  NAGQRPPRRSSGPGRTRKNEPN--RNEA---AEDLKNPKSNNQEEIIALFRKIQTSIAKD 132
           NA  RPPRR+S PG+TRK+E +  + EA    E++K  K N+QEEIIALFRKIQ SIAK+
Sbjct: 80  NARNRPPRRNSLPGKTRKSESSSRKKEAPKNEENIKKSKPNDQEEIIALFRKIQASIAKE 139

Query: 133 SATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGISEEPEMYHTS-- 192
           SA++ DE+SH+DE GA SILE+LRE RKQ+KG+TSKKAG KV R KG SEE EM+  S  
Sbjct: 140 SASSIDEESHKDEHGATSILETLREPRKQLKGKTSKKAGAKVFRSKGTSEEKEMHDPSPP 199

Query: 193 PAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPSVENMKLTEL 252
           PAA+FKLVRPPSKFVKRSPIP            + + SQAIAESRE+KFPS+ENMKL EL
Sbjct: 200 PAADFKLVRPPSKFVKRSPIPP-----------KVDASQAIAESRELKFPSIENMKLAEL 259

Query: 253 KAVAKSRGIKGYSKLKKNELLELLRS 270
           KA+AKSRGIKGYSKLKKNEL+E+LRS
Sbjct: 260 KALAKSRGIKGYSKLKKNELMEILRS 274

[Close]

BLAST of MS026434.1 vs. ExPASy TrEMBL
Match: A0A6J1GSF6 (uncharacterized protein LOC111456710 OS=Cucurbita moschata OX=3662 GN=LOC111456710 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 4.3e-62
Identity = 164/263 (62.36%), Postives = 186/263 (70.72%), Query Frame = 0


Query: 14  KSDGGSSFPVSN-STLSQFGLF-WKETHFRFESLLNLAEIAAVNSSKGIQVSVTSNGG-G 73
           KS+G SS  VSN +   QFGLF  +ETHF FESLLNLAEIA    SK IQ++V+SNG  G
Sbjct: 60  KSNGSSSSSVSNPNPFPQFGLFHQEETHFHFESLLNLAEIADGYRSKSIQLAVSSNGNDG 119

Query: 74  NAGQRPPRRSSGPGRTRKNEPNRNEA----AEDLKNPKSNNQEEIIALFRKIQTSIAKDS 133
             G +P RRSS PGRTRKN  +  +      ED+K PKSNNQEEIIALFRKIQTSIA+++
Sbjct: 120 KTGHQPVRRSSAPGRTRKNVSSLRKTDTHKNEDMKKPKSNNQEEIIALFRKIQTSIAEEA 179

Query: 134 ATTKDEDSHEDEIGAESILESLRESRKQVKGRTSKKAGVKVLRRKGISEEPEMYHTSPAA 193
           A++ DE+S++DE G ESILE+L ESRKQVKG+T K AGVK LRR G SE         AA
Sbjct: 180 ASSIDENSNKDEDGTESILEALTESRKQVKGKTLKNAGVKGLRRTGTSE--------AAA 239

Query: 194 EFKLVRPPSKFVKRSPIPSPPGRNGSRSQLREEPSQAIAESREMKFPSVENMKLTELKAV 253
           EFKLVRPPS FVKRSPIPSP G NG+                     +VENMKL ELKAV
Sbjct: 240 EFKLVRPPSNFVKRSPIPSPAGGNGTHL-------------------TVENMKLKELKAV 295

Query: 254 AKSRGIKGYSKLKKNELLELLRS 270
           AKSRGIKGYSKLKKNELLELL S
Sbjct: 300 AKSRGIKGYSKLKKNELLELLTS 295

[Close]

BLAST of MS026434.1 vs. TAIR 10
Match: AT4G18740.1 (Rho termination factor )

HSP 1 Score: 101.7 bits (252), Expect = 9.6e-22
Identity = 72/174 (41.38%), Postives = 101/174 (58.05%), Query Frame = 0


Query: 102 NPKSNNQEEIIALFRKIQTSIAKDSATTKDEDSHEDEIGAE-----SILESLRESRKQVK 161
           NP  +NQEEII+L ++IQ+SI+K  +   +E+ + DE   E     +IL+ L +SRK+ +
Sbjct: 89  NPSKSNQEEIISLLKRIQSSISKGESRGVEEEKNSDESSKEKPLTKAILDVLEKSRKKTE 148

Query: 162 GRTSKKAGVKVLRRKGISEEPEMYHTSPAAEFKLVRPPSKFVKRSPI-PSPPGRNGSRSQ 221
           G TS            + E+P      P  + +L RPPS FVKR+P+  S  G  G    
Sbjct: 149 GDTS------------VKEKP------PKRQVELPRPPSSFVKRTPLSSSASGPRGKLPV 208

Query: 222 LREEPSQAIAESREMKFPSVENMKLTELKAVAKSRGIKGYSKLKKNELLELLRS 270
              + +      +E K   +E MKL ELK VAK+RGIKGYSKL+K+ELLEL+RS
Sbjct: 209 SNSDKALGKLTKKEEKASLIETMKLAELKEVAKNRGIKGYSKLRKSELLELIRS 244

[Close]

BLAST of MS026434.1 vs. TAIR 10
Match: AT4G18740.2 (Rho termination factor )

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-16
Identity = 66/173 (38.15%), Postives = 92/173 (53.18%), Query Frame = 0


Query: 102 NPKSNNQEEIIALFRKIQTSIAKDSATTKDEDSHEDEIGAE-----SILESLRESRKQVK 161
           NP  +NQEEII+L ++IQ+SI+K  +   +E+ + DE   E     +IL+ L +SRK+ +
Sbjct: 89  NPSKSNQEEIISLLKRIQSSISKGESRGVEEEKNSDESSKEKPLTKAILDVLEKSRKKTE 148

Query: 162 GRTSKKAGVKVLRRKGISEEPEMYHTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQL 221
           G TS            + E+P      P  + +L RPPS FVKR+P+ S    +G R   
Sbjct: 149 GDTS------------VKEKP------PKRQVELPRPPSSFVKRTPLSS--SASGPR--- 208

Query: 222 REEPSQAIAESREMKFPSVENMKLTELKAVAKSRGIKGYSKLKKNELLELLRS 270
                                    ELK VAK+RGIKGYSKL+K+ELLEL+RS
Sbjct: 209 -------------------------ELKEVAKNRGIKGYSKLRKSELLELIRS 213

[Close]

BLAST of MS026434.1 vs. TAIR 10
Match: AT4G18740.3 (Rho termination factor )

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-16
Identity = 66/173 (38.15%), Postives = 92/173 (53.18%), Query Frame = 0


Query: 102 NPKSNNQEEIIALFRKIQTSIAKDSATTKDEDSHEDEIGAE-----SILESLRESRKQVK 161
           NP  +NQEEII+L ++IQ+SI+K  +   +E+ + DE   E     +IL+ L +SRK+ +
Sbjct: 64  NPSKSNQEEIISLLKRIQSSISKGESRGVEEEKNSDESSKEKPLTKAILDVLEKSRKKTE 123

Query: 162 GRTSKKAGVKVLRRKGISEEPEMYHTSPAAEFKLVRPPSKFVKRSPIPSPPGRNGSRSQL 221
           G TS            + E+P      P  + +L RPPS FVKR+P+ S    +G R   
Sbjct: 124 GDTS------------VKEKP------PKRQVELPRPPSSFVKRTPLSS--SASGPR--- 183

Query: 222 REEPSQAIAESREMKFPSVENMKLTELKAVAKSRGIKGYSKLKKNELLELLRS 270
                                    ELK VAK+RGIKGYSKL+K+ELLEL+RS
Sbjct: 184 -------------------------ELKEVAKNRGIKGYSKLRKSELLELIRS 188

[Close]

BLAST of MS026434.1 vs. TAIR 10
Match: AT1G06190.1 (Rho termination factor )

HSP 1 Score: 44.3 bits (103), Expect = 1.8e-04
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 226 ESREMKFPSVENMKLTELKAVAKSRGIKGYSKLKKNELLELLRS 270
           E+ E     +  +KL EL+ +AKSRG+KG SK+KK EL+ELL S
Sbjct: 355 EAEEEAVKDLSELKLVELRGIAKSRGLKGLSKMKKAELVELLGS 398

The following BLAST results are available for this feature:

BLAST of MS026434.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139842.1	2.6e-138	99.63	uncharacterized protein LOC111010657 isoform X1 [Momordica charantia]	[more]
XP_022139843.1	4.4e-109	99.55	uncharacterized protein LOC111010657 isoform X2 [Momordica charantia]	[more]
XP_008446702.1	7.8e-74	66.92	PREDICTED: SAP-like protein BP-73 [Cucumis melo] >KAA0057053.1 SAP-like protein ...	[more]
XP_011648505.1	2.1e-71	65.66	uncharacterized protein LOC105434499, partial [Cucumis sativus]	[more]
XP_038893911.1	1.7e-68	70.39	SAP-like protein BP-73 isoform X2 [Benincasa hispida]	[more]

BLAST of MS026434.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L4E7	3.6e-05	65.71	SAP-like protein BP-73 OS=Oryza sativa subsp. japonica OX=39947 GN=BP-73 PE=1 SV...	[more]

BLAST of MS026434.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CF22	1.3e-138	99.63	uncharacterized protein LOC111010657 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1CGN3	2.1e-109	99.55	uncharacterized protein LOC111010657 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A5A7UMB7	3.8e-74	66.92	SAP-like protein BP-73 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9...	[more]
A0A1S3BFQ9	3.8e-74	66.92	SAP-like protein BP-73 OS=Cucumis melo OX=3656 GN=LOC103489342 PE=4 SV=1	[more]
A0A6J1GSF6	4.3e-62	62.36	uncharacterized protein LOC111456710 OS=Cucurbita moschata OX=3662 GN=LOC1114567...	[more]

BLAST of MS026434.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18740.1	9.6e-22	41.38	Rho termination factor	[more]
AT4G18740.2	1.6e-16	38.15	Rho termination factor	[more]
AT4G18740.3	1.6e-16	38.15	Rho termination factor	[more]
AT1G06190.1	1.8e-04	52.27	Rho termination factor	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011112	Rho termination factor, N-terminal	PFAM	PF07498	Rho_N	coord: 236..264 e-value: 5.9E-8 score: 32.5
None	No IPR available	GENE3D	1.10.720.10		coord: 224..264 e-value: 8.9E-7 score: 30.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..230
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..108
None	No IPR available	PANTHER	PTHR34449:SF2	RHO TERMINATION FACTOR	coord: 15..269
None	No IPR available	PANTHER	PTHR34449	RHO TERMINATION FACTOR	coord: 15..269

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS026434	MS026434	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS026434.1-cds	MS026434.1-cds-scaffold402:2338919..2339049	CDS
MS026434.1-cds	MS026434.1-cds-scaffold402:2339193..2339530	CDS
MS026434.1-cds	MS026434.1-cds-scaffold402:2339702..2340042	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS026434.1	MS026434.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006353	DNA-templated transcription, termination