MS024767.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS024767.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold995: 376937 .. 377965 (+)
Sequence length	249
RNA-Seq Expression	MS024767.1
Synteny	MS024767.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGCATCGGTGCAGGCGCCGCACCGGGTCAAGCCAGTCAAGTCGCACTCGCCATTGGGGACGAGGGATGGAAAATTGGCAATGTGGATCCGGGAGTTGGAAGAGGGAGGTGCGTTAGAAGAAGTTCACCACAAAGGAGCAACTGTTATCACTTTTCTCCATATATTTAATTGAAAAGAAAGTTTGAAGTGTCTTGACACATCATTTTTACATCACACAAACAACATACCATCAACAAATGTAATCGATGTCTCAAAATACCAAATAGATCATGTGATGAATTGTATGCTATAATCATTGTCGGTCTGTATTAAATCAAACTAATTAAATAGAGCTTCAACAAGACCGAGACTGCCATTCCCATTCCATTCATAAATCAACTATATTGAATCCATGAAACTTCATTAGATTTGATTGTGGCACACTGATCATTCCTATCTCGATGCTCCTTTAATTTGGATAAGAGTTGCTGCAGTAGTACCCTACAAGTCAATAGACCTTGCAAATCAAAATGTTAAGCATAATACCTTGTGAACGGAACTAAAACCACCTTCTCTGAAGTTCTATGAAGAATCAAAATCCTAGCTGATAAAAGCTACCGCAGGCTAGAGGGTTTTGCTTTGATTCTAAACTTAAATATAAAAAAGAAATCAATGAGATAGAAAATCAAATAAGAAAGGCAAGTACCTTTTGGCAATGGGGTTCTCCATATTCCAGGTGCAGCTCGAGGGCACCCTAGGATTTAAATCAGAATAATGCAATGCAAACACAACGCACTTTCAAAATTCCAGGTCCAGTTTGAGATGATAGTAATCAATAATTAGAAAGATTTGGATTTGGTTGTGTGGCTAACTCCCATCAAGAAGCACCTTGAAGTTGTGGAACGCAGTCAAGACATGGCTGCCGTATTGCTATCAGCTTCAGACAGCTGCCATTTGTCCACCTAAAGAAACAGAGCGAGGGAGGCAAGGGAGAATGAAGGCCAGGGCTCAACAAATACCTCTACCTCTAACAAAAAAGCTGTGA

mRNA sequence

ATGGTAGCATCGGTGCAGGCGCCGCACCGGGTCAAGCCAGTCAAGTCGCACTCGCCATTGGGGACGAGGGATGGAAAATTGGCAATGTGGATCCGGGAGTTGGAAGAGGGAGTCAAGACATGGCTGCCGTATTGCTATCAGCTTCAGACAGCTGCCATTTGTCCACCTAAAGAAACAGAGCGAGGGAGGCAAGGGAGAATGAAGGCCAGGGCTCAACAAATACCTCTACCTCTAACAAAAAAGCTGTGA

Coding sequence (CDS)

ATGGTAGCATCGGTGCAGGCGCCGCACCGGGTCAAGCCAGTCAAGTCGCACTCGCCATTGGGGACGAGGGATGGAAAATTGGCAATGTGGATCCGGGAGTTGGAAGAGGGAGTCAAGACATGGCTGCCGTATTGCTATCAGCTTCAGACAGCTGCCATTTGTCCACCTAAAGAAACAGAGCGAGGGAGGCAAGGGAGAATGAAGGCCAGGGCTCAACAAATACCTCTACCTCTAACAAAAAAGCTGTGA

Protein sequence

MVASVQAPHRVKPVKSHSPLGTRDGKLAMWIRELEEGVKTWLPYCYQLQTAAICPPKETERGRQGRMKARAQQIPLPLTKKL

Homology

The following BLAST results are available for this feature:

BLAST of MS024767.1 vs.


Match Name	E-value	Identity	Description

BLAST of MS024767.1 vs.


Match Name	E-value	Identity	Description

BLAST of MS024767.1 vs.


Match Name	E-value	Identity	Description

BLAST of MS024767.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS024767	MS024767	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS024767.1-cds	MS024767.1-cds-scaffold995:376937..377048	CDS
MS024767.1-cds	MS024767.1-cds-scaffold995:377829..377965	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS024767.1	MS024767.1-protein	polypeptide