MS024270.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS024270.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Pentatricopeptide repeat-containing protein
Location	scaffold30: 658280 .. 660199 (+)
Sequence length	1920
RNA-Seq Expression	MS024270.1
Synteny	MS024270.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAGAAGAACCGCGATTCTGACGTCTCTCAGACTAGCAAACTCGTTCCTGTCAGCTCAGATTTCATCGACTCGGTCGCTATATCCCCAGGTGACTCGATTTTCACCCACTTCTTCTGTTTCTCATCGATCCCATTTTCTCGATTTCAAAAGTACTCATCCATTGCTGTTTTTCTCGTCCAAGCCCCATTCGCTTCTCCAGTTTGTTTTGGCCAACGATTGGTCACAAGATTTAGAAAACGAATTAGAGACTTTGAACCCTACCCTGACACACGAAACTGTCGTCTATGTTTTGAAAAGACTAGATAAAGAACCCCAAAAAGCCTCGGGTTTCTTCAATTGGGCCTGCGGGAAAAATGGGTTTACCCAAAGTTCTTCGATTTATAGCATTTTGCTTAGGATTTTTGTTCAAAATGAGTCGATGAAGCAGTTTTGGATCACATTAAGGGTAATGAAAGAACGGGGATTTTACCTGGATGAGGAAACATATTTGACCATGTTGGGAATCTTAAGGAGGGCAAAGAAGGCCGCAGATGCCACGGCTTTGACCCATTTTTACAATCGGATGCTGCAAGAAAATGCCATGGATAGTGTGGTGCAGAAGGTGGTTAACATTGTTTTAGGGTCAGAGTGGAGTAGCGATGTTGCTGAAAACCTTGAAGGGCTTGGCATTGTATTATCGGATAACTTTGTAATTAGAGCGTTGAAGGAACTTCGAAATTTTCCACTGAAAGCCTTGAGCTTTTTCCATTGGGTTGGTTGTAGACCGGATTTTGATCACAACACAGTTACATACAATGCAATTGCCAGGGTTCTTGGACGGGATGACTCGATCGAGGCATTTTGGGGTGTGGTTGACGAAATGAAGAATGCTGGTCACGAGATCGATATTGACACTTACATAAAGATATCGAGGCAGTTTCAGAGGAGCAAGATGATGGGTGAAGCTGTCAAGCTTTATGAGCTTATGATGGATGGGCCATACCGACCCTCATTGCAGGATTGCAGCGTGCTTTTGCGGAGTATATCTGCTAGTGATAATCCAGATTTGAGCTTGGTATTTAGAGTGGCCAAGAAATATGAGGCAACAGGGTACAGTCTCTCCAAAGCCATTTACGATGGAATCCATAGGTCGTTGACAAGTGCAGGAAAGTTCGATGAAGCGGAGAATATTGTGAAGTCGATGAGAAATGCAGGGTATGAGCCTGACAATGTTACATACAGCCAACTGGTATTTGGACTTTGCAAGGCTAGGAGACTTGAGGAAGCCTGTAAGCTGCTGGATGAAATGGAAGCAGAAGGATGCATTCCTGATATCAAGACTTGGACCATTTTAATTCAAGGACACTGTACTACCAATGAAGTTGATAAGGCATTAGTTTGTTTTGCAAAGATGATAGAGAGGAACTGCGATCCAGACGCCGATCTTTTGGATGTCTTGATTGATGGTTTCCTTGGCCAGAGAAAGCTAGATGGTGCGTACCAGTTGCTGATTGAGTTGGTGAATAAGGCTCATTTGAGGCCATGGCAGGCGACATACAAACAGCTAATCGAAAAGCTTCTAGAAGTAAGGAAGCTTGAGGAAGCAATTACCCTCCTTCGTTTAATGAAGAAACAAAACTACCCGCCTTTTTCGGAACCATTTGTTCTATATATCTCCAAGTTTGGTACAGTGGAGGACGCTGCTGACTTTTTGAAGGTTCTGAGCTCAAAAGAATATCCTTCCGTGTCTGCCTACCTTCATGTTTTTAATTCGTTTTTCAATGAAGGCAGATGTTCTGAGGCCAAAGATCTTCTCTTCAAATGCCCACATCACATCAGAAAGCATAGTGAAGTCTGTAAGCTCTTTGGATCTGCAGAAAGCAAAAGCACTGATGCTACTAAATCTTCCTCCAAACCATTGGAAGTTGGAACTTAA

mRNA sequence

ATGACGAGAAGAACCGCGATTCTGACGTCTCTCAGACTAGCAAACTCGTTCCTGTCAGCTCAGATTTCATCGACTCGGTCGCTATATCCCCAGGTGACTCGATTTTCACCCACTTCTTCTGTTTCTCATCGATCCCATTTTCTCGATTTCAAAAGTACTCATCCATTGCTGTTTTTCTCGTCCAAGCCCCATTCGCTTCTCCAGTTTGTTTTGGCCAACGATTGGTCACAAGATTTAGAAAACGAATTAGAGACTTTGAACCCTACCCTGACACACGAAACTGTCGTCTATGTTTTGAAAAGACTAGATAAAGAACCCCAAAAAGCCTCGGGTTTCTTCAATTGGGCCTGCGGGAAAAATGGGTTTACCCAAAGTTCTTCGATTTATAGCATTTTGCTTAGGATTTTTGTTCAAAATGAGTCGATGAAGCAGTTTTGGATCACATTAAGGGTAATGAAAGAACGGGGATTTTACCTGGATGAGGAAACATATTTGACCATGTTGGGAATCTTAAGGAGGGCAAAGAAGGCCGCAGATGCCACGGCTTTGACCCATTTTTACAATCGGATGCTGCAAGAAAATGCCATGGATAGTGTGGTGCAGAAGGTGGTTAACATTGTTTTAGGGTCAGAGTGGAGTAGCGATGTTGCTGAAAACCTTGAAGGGCTTGGCATTGTATTATCGGATAACTTTGTAATTAGAGCGTTGAAGGAACTTCGAAATTTTCCACTGAAAGCCTTGAGCTTTTTCCATTGGGTTGGTTGTAGACCGGATTTTGATCACAACACAGTTACATACAATGCAATTGCCAGGGTTCTTGGACGGGATGACTCGATCGAGGCATTTTGGGGTGTGGTTGACGAAATGAAGAATGCTGGTCACGAGATCGATATTGACACTTACATAAAGATATCGAGGCAGTTTCAGAGGAGCAAGATGATGGGTGAAGCTGTCAAGCTTTATGAGCTTATGATGGATGGGCCATACCGACCCTCATTGCAGGATTGCAGCGTGCTTTTGCGGAGTATATCTGCTAGTGATAATCCAGATTTGAGCTTGGTATTTAGAGTGGCCAAGAAATATGAGGCAACAGGGTACAGTCTCTCCAAAGCCATTTACGATGGAATCCATAGGTCGTTGACAAGTGCAGGAAAGTTCGATGAAGCGGAGAATATTGTGAAGTCGATGAGAAATGCAGGGTATGAGCCTGACAATGTTACATACAGCCAACTGGTATTTGGACTTTGCAAGGCTAGGAGACTTGAGGAAGCCTGTAAGCTGCTGGATGAAATGGAAGCAGAAGGATGCATTCCTGATATCAAGACTTGGACCATTTTAATTCAAGGACACTGTACTACCAATGAAGTTGATAAGGCATTAGTTTGTTTTGCAAAGATGATAGAGAGGAACTGCGATCCAGACGCCGATCTTTTGGATGTCTTGATTGATGGTTTCCTTGGCCAGAGAAAGCTAGATGGTGCGTACCAGTTGCTGATTGAGTTGGTGAATAAGGCTCATTTGAGGCCATGGCAGGCGACATACAAACAGCTAATCGAAAAGCTTCTAGAAGTAAGGAAGCTTGAGGAAGCAATTACCCTCCTTCGTTTAATGAAGAAACAAAACTACCCGCCTTTTTCGGAACCATTTGTTCTATATATCTCCAAGTTTGGTACAGTGGAGGACGCTGCTGACTTTTTGAAGGTTCTGAGCTCAAAAGAATATCCTTCCGTGTCTGCCTACCTTCATGTTTTTAATTCGTTTTTCAATGAAGGCAGATGTTCTGAGGCCAAAGATCTTCTCTTCAAATGCCCACATCACATCAGAAAGCATAGTGAAGTCTGTAAGCTCTTTGGATCTGCAGAAAGCAAAAGCACTGATGCTACTAAATCTTCCTCCAAACCATTGGAAGTTGGAACTTAA

Coding sequence (CDS)

ATGACGAGAAGAACCGCGATTCTGACGTCTCTCAGACTAGCAAACTCGTTCCTGTCAGCTCAGATTTCATCGACTCGGTCGCTATATCCCCAGGTGACTCGATTTTCACCCACTTCTTCTGTTTCTCATCGATCCCATTTTCTCGATTTCAAAAGTACTCATCCATTGCTGTTTTTCTCGTCCAAGCCCCATTCGCTTCTCCAGTTTGTTTTGGCCAACGATTGGTCACAAGATTTAGAAAACGAATTAGAGACTTTGAACCCTACCCTGACACACGAAACTGTCGTCTATGTTTTGAAAAGACTAGATAAAGAACCCCAAAAAGCCTCGGGTTTCTTCAATTGGGCCTGCGGGAAAAATGGGTTTACCCAAAGTTCTTCGATTTATAGCATTTTGCTTAGGATTTTTGTTCAAAATGAGTCGATGAAGCAGTTTTGGATCACATTAAGGGTAATGAAAGAACGGGGATTTTACCTGGATGAGGAAACATATTTGACCATGTTGGGAATCTTAAGGAGGGCAAAGAAGGCCGCAGATGCCACGGCTTTGACCCATTTTTACAATCGGATGCTGCAAGAAAATGCCATGGATAGTGTGGTGCAGAAGGTGGTTAACATTGTTTTAGGGTCAGAGTGGAGTAGCGATGTTGCTGAAAACCTTGAAGGGCTTGGCATTGTATTATCGGATAACTTTGTAATTAGAGCGTTGAAGGAACTTCGAAATTTTCCACTGAAAGCCTTGAGCTTTTTCCATTGGGTTGGTTGTAGACCGGATTTTGATCACAACACAGTTACATACAATGCAATTGCCAGGGTTCTTGGACGGGATGACTCGATCGAGGCATTTTGGGGTGTGGTTGACGAAATGAAGAATGCTGGTCACGAGATCGATATTGACACTTACATAAAGATATCGAGGCAGTTTCAGAGGAGCAAGATGATGGGTGAAGCTGTCAAGCTTTATGAGCTTATGATGGATGGGCCATACCGACCCTCATTGCAGGATTGCAGCGTGCTTTTGCGGAGTATATCTGCTAGTGATAATCCAGATTTGAGCTTGGTATTTAGAGTGGCCAAGAAATATGAGGCAACAGGGTACAGTCTCTCCAAAGCCATTTACGATGGAATCCATAGGTCGTTGACAAGTGCAGGAAAGTTCGATGAAGCGGAGAATATTGTGAAGTCGATGAGAAATGCAGGGTATGAGCCTGACAATGTTACATACAGCCAACTGGTATTTGGACTTTGCAAGGCTAGGAGACTTGAGGAAGCCTGTAAGCTGCTGGATGAAATGGAAGCAGAAGGATGCATTCCTGATATCAAGACTTGGACCATTTTAATTCAAGGACACTGTACTACCAATGAAGTTGATAAGGCATTAGTTTGTTTTGCAAAGATGATAGAGAGGAACTGCGATCCAGACGCCGATCTTTTGGATGTCTTGATTGATGGTTTCCTTGGCCAGAGAAAGCTAGATGGTGCGTACCAGTTGCTGATTGAGTTGGTGAATAAGGCTCATTTGAGGCCATGGCAGGCGACATACAAACAGCTAATCGAAAAGCTTCTAGAAGTAAGGAAGCTTGAGGAAGCAATTACCCTCCTTCGTTTAATGAAGAAACAAAACTACCCGCCTTTTTCGGAACCATTTGTTCTATATATCTCCAAGTTTGGTACAGTGGAGGACGCTGCTGACTTTTTGAAGGTTCTGAGCTCAAAAGAATATCCTTCCGTGTCTGCCTACCTTCATGTTTTTAATTCGTTTTTCAATGAAGGCAGATGTTCTGAGGCCAAAGATCTTCTCTTCAAATGCCCACATCACATCAGAAAGCATAGTGAAGTCTGTAAGCTCTTTGGATCTGCAGAAAGCAAAAGCACTGATGCTACTAAATCTTCCTCCAAACCATTGGAAGTTGGAACTTAA

Protein sequence

MTRRTAILTSLRLANSFLSAQISSTRSLYPQVTRFSPTSSVSHRSHFLDFKSTHPLLFFSSKPHSLLQFVLANDWSQDLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKNGFTQSSSIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADATALTHFYNRMLQENAMDSVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELRNFPLKALSFFHWVGCRPDFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDTYIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVLLRSISASDNPDLSLVFRVAKKYEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARRLEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADLLDVLIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLIEKLLEVRKLEEAITLLRLMKKQNYPPFSEPFVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLLFKCPHHIRKHSEVCKLFGSAESKSTDATKSSSKPLEVGT

Homology

[Close]

BLAST of MS024270.1 vs. NCBI nr
Match: XP_022135299.1 (pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Momordica charantia])

HSP 1 Score: 1258.8 bits (3256), Expect = 0.0e+00
Identity = 637/639 (99.69%), Postives = 637/639 (99.69%), Query Frame = 0


Query: 1   MTRRTAILTSLRLANSFLSAQISSTRSLYPQVTRFSPTSSVSHRSHFLDFKSTHPLLFFS 60
           MTRRTAILTSLRLANSFLSAQISSTRSLYPQVTRFSPT SVSHRSHFLDFKSTHPLLFFS
Sbjct: 1   MTRRTAILTSLRLANSFLSAQISSTRSLYPQVTRFSPT-SVSHRSHFLDFKSTHPLLFFS 60

Query: 61  SKPHSLLQFVLANDWSQDLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKN 120
           SKPHSLLQFVLANDWSQDLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKN
Sbjct: 61  SKPHSLLQFVLANDWSQDLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKN 120

Query: 121 GFTQSSSIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADA 180
           GFTQSSSIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADA
Sbjct: 121 GFTQSSSIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADA 180

Query: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELR 240
           TALTHFYNRMLQENAMDSVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELR
Sbjct: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELR 240

Query: 241 NFPLKALSFFHWVGCRPDFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDT 300
           NFPLKALSFFHWVGCR DFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDT
Sbjct: 241 NFPLKALSFFHWVGCRLDFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDT 300

Query: 301 YIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360
           YIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVLLRSISASDNPDLSLVFRVAKK
Sbjct: 301 YIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360

Query: 361 YEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR 420
           YEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR
Sbjct: 361 YEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR 420

Query: 421 LEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADLLDV 480
           LEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADLLDV
Sbjct: 421 LEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADLLDV 480

Query: 481 LIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLIEKLLEVRKLEEAITLLRLMKKQ 540
           LIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLIEKLLEVRKLEEAITLLRLMKKQ
Sbjct: 481 LIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLIEKLLEVRKLEEAITLLRLMKKQ 540

Query: 541 NYPPFSEPFVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLL 600
           NYPPFSEPFVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLL
Sbjct: 541 NYPPFSEPFVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLL 600

Query: 601 FKCPHHIRKHSEVCKLFGSAESKSTDATKSSSKPLEVGT 640
           FKCPHHIRKHSEVCKLFGSAESKSTDATKSSSKPLEVGT
Sbjct: 601 FKCPHHIRKHSEVCKLFGSAESKSTDATKSSSKPLEVGT 638

[Close]

BLAST of MS024270.1 vs. NCBI nr
Match: XP_022933685.1 (pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Cucurbita moschata])

HSP 1 Score: 1114.4 bits (2881), Expect = 0.0e+00
Identity = 561/640 (87.66%), Postives = 596/640 (93.12%), Query Frame = 0


Query: 1   MTRRTAILTSLRLANSFLSAQISSTRSLYPQVTRFSPTSSVSHRSHFLDFKSTHPLLFFS 60
           M RR AILTSL LANS     + STRS Y QVTRF P SS+SH+S F  F + H +LFFS
Sbjct: 1   MARRKAILTSLTLANS-----LYSTRSCYSQVTRFLP-SSLSHQSRFPPFTTNHRILFFS 60

Query: 61  SKPHSLLQFVLANDWSQDLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKN 120
           SKPHSLL+ VLANDWS+ LE ELETLNPTLTHET+VYVLKRLDKEPQKAS FF+WACGKN
Sbjct: 61  SKPHSLLELVLANDWSETLETELETLNPTLTHETMVYVLKRLDKEPQKASDFFDWACGKN 120

Query: 121 GFTQSSSIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADA 180
           G TQSS IYSILLRI VQNESMKQFWITLRVMKERGFYLDEETYLT+LG+L+RAKKAADA
Sbjct: 121 GSTQSSPIYSILLRIVVQNESMKQFWITLRVMKERGFYLDEETYLTILGVLKRAKKAADA 180

Query: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELR 240
           TALTHFYNRMLQENAMDSVVQKVVNIVL SEW++DVAE LEGLGIVLSD+FVIR LKELR
Sbjct: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLRSEWNNDVAEKLEGLGIVLSDSFVIRVLKELR 240

Query: 241 NFPLKALSFFHWVGCRPDFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDT 300
           NFPLK LSFFHWVGCRPD+DHNTVTYNAIARVLGRDDSIEAFWG+V+EMKNAGHEIDIDT
Sbjct: 241 NFPLKGLSFFHWVGCRPDYDHNTVTYNAIARVLGRDDSIEAFWGLVEEMKNAGHEIDIDT 300

Query: 301 YIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360
           YIKISRQFQRSKMMG+AVKLYELMMDGPY+PSLQDCSVLLRSISASDNPDLSLVFRVAKK
Sbjct: 301 YIKISRQFQRSKMMGDAVKLYELMMDGPYKPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360

Query: 361 YEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR 420
           +EATGYSLSKA+YDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR
Sbjct: 361 FEATGYSLSKAVYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR 420

Query: 421 LEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADLLDV 480
           LEEAC++LDEMEA+GC+PDIKTWTILIQGHCT NEVDKALVCFAKMIE+NCDPDADLLDV
Sbjct: 421 LEEACEVLDEMEAQGCVPDIKTWTILIQGHCTANEVDKALVCFAKMIEKNCDPDADLLDV 480

Query: 481 LIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLIEKLLEVRKLEEAITLLRLMKKQ 540
           LI GFLGQ+KLDGAYQLLIELVNKAHLRPWQATYK LIEKLLEVRKLEEAI+LLRLMKKQ
Sbjct: 481 LISGFLGQKKLDGAYQLLIELVNKAHLRPWQATYKHLIEKLLEVRKLEEAISLLRLMKKQ 540

Query: 541 NYPPFSEPFVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLL 600
           NYPPF EPFV YISKFGTVEDAA+FLK LSSKEYPS+SAYLHVFNSFFNEGR SEAKDLL
Sbjct: 541 NYPPFPEPFVQYISKFGTVEDAAEFLKALSSKEYPSMSAYLHVFNSFFNEGRHSEAKDLL 600

Query: 601 FKCPHHIRKHSEVCKLFGSAESKSTDATKSS-SKPLEVGT 640
           FKCPHHIRKHSE+CKLFGSAESKST  T ++ S P  +GT
Sbjct: 601 FKCPHHIRKHSEICKLFGSAESKSTTTTTTTQSSPNPIGT 634

[Close]

BLAST of MS024270.1 vs. NCBI nr
Match: XP_023530746.1 (pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 1113.2 bits (2878), Expect = 0.0e+00
Identity = 560/643 (87.09%), Postives = 596/643 (92.69%), Query Frame = 0


Query: 1   MTRRTAILTSLRLANSFLSAQISSTRSLYPQVTRFSPTSSVSHRSHFLDFKSTHPLLFFS 60
           M RR AILTSL LANS     + STRS + QVTRF P SS+SH+S F  F + H ++FFS
Sbjct: 1   MARRKAILTSLTLANS-----LFSTRSSHSQVTRFLP-SSLSHQSRFPPFTTNHRIMFFS 60

Query: 61  SKPHSLLQFVLANDWSQDLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKN 120
           SKPHSLL+ VLANDWS+ LE ELETLNPTLTHET+VYVLKRLDKEPQKAS FFNWACGKN
Sbjct: 61  SKPHSLLELVLANDWSEILETELETLNPTLTHETMVYVLKRLDKEPQKASDFFNWACGKN 120

Query: 121 GFTQSSSIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADA 180
           G TQSS IYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLT+LG+L+RAKKAADA
Sbjct: 121 GSTQSSPIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTILGVLKRAKKAADA 180

Query: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELR 240
           TALTHFYNRMLQENAMDSVVQKVVNIVL SEW++DVAE LEGLGIVLSD+FVIR LKELR
Sbjct: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLQSEWNNDVAEKLEGLGIVLSDSFVIRVLKELR 240

Query: 241 NFPLKALSFFHWVGCRPDFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDT 300
           NFPLK LSFFHWVGCRPD+DHNTVTYNAIARVLGRDDSIEAFWG+V+EMKNAGHEIDIDT
Sbjct: 241 NFPLKGLSFFHWVGCRPDYDHNTVTYNAIARVLGRDDSIEAFWGLVEEMKNAGHEIDIDT 300

Query: 301 YIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360
           YIKISRQFQRSKMMG+AVKLYELMMDGPY+PSLQDCSVLLRSISASDNPDLSLVFRVAKK
Sbjct: 301 YIKISRQFQRSKMMGDAVKLYELMMDGPYKPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360

Query: 361 YEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR 420
           +EATGYSLSKA+YDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR
Sbjct: 361 FEATGYSLSKAVYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR 420

Query: 421 LEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADLLDV 480
           LEEAC++LDEMEA+GC+PDIKTWTILIQGHCT NEVDKALVCFAKMIE+NCDPDADLLDV
Sbjct: 421 LEEACEVLDEMEAQGCVPDIKTWTILIQGHCTANEVDKALVCFAKMIEKNCDPDADLLDV 480

Query: 481 LIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLIEKLLEVRKLEEAITLLRLMKKQ 540
           LI GFLGQ+KLDGAYQLLIELVNKAHLRPWQATYK LIEKLLEVRKLEEAI+LLRLMKKQ
Sbjct: 481 LISGFLGQKKLDGAYQLLIELVNKAHLRPWQATYKHLIEKLLEVRKLEEAISLLRLMKKQ 540

Query: 541 NYPPFSEPFVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLL 600
           NYPPF EPFV YISKFGTVEDAA+FLK LSSKEYPS+SAYLH+FNSFFNEGR SEAKDLL
Sbjct: 541 NYPPFPEPFVQYISKFGTVEDAAEFLKALSSKEYPSMSAYLHIFNSFFNEGRHSEAKDLL 600

Query: 601 FKCPHHIRKHSEVCKLFGSAESKS----TDATKSSSKPLEVGT 640
           FKCPHHIRKHSE+CKLFGSAESKS    T  T + S P  +GT
Sbjct: 601 FKCPHHIRKHSEICKLFGSAESKSTTPTTTTTTTQSSPNPIGT 637

[Close]

BLAST of MS024270.1 vs. NCBI nr
Match: KAG6587441.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 1112.4 bits (2876), Expect = 0.0e+00
Identity = 561/641 (87.52%), Postives = 595/641 (92.82%), Query Frame = 0


Query: 1   MTRRTAILTSLRLANSFLSAQISSTRSLYPQVTRFSPTSSVSHRSHFLDFKSTHPLLFFS 60
           M RR AILTSL LANS     + STRS Y QVTRF P SS+SH+S F  F +   +LFFS
Sbjct: 1   MARRKAILTSLTLANS-----LYSTRSCYSQVTRFLP-SSLSHQSRFPPFTTNRRILFFS 60

Query: 61  SKPHSLLQFVLANDWSQDLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKN 120
           SKPHSLL+ VLANDWS+ LE ELETLNPTLTHET+VYVLKRLDKEPQKAS FF+WACGKN
Sbjct: 61  SKPHSLLELVLANDWSETLEAELETLNPTLTHETMVYVLKRLDKEPQKASDFFDWACGKN 120

Query: 121 GFTQSSSIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADA 180
           G TQSS IYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLT+LG+L+RAKKAADA
Sbjct: 121 GSTQSSPIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTILGVLKRAKKAADA 180

Query: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELR 240
           TALTHFYNRMLQENAMDSVVQKVVNIVL SEW++DVAE LEGLGIVLSD+FVIR LKELR
Sbjct: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLRSEWNNDVAEKLEGLGIVLSDSFVIRVLKELR 240

Query: 241 NFPLKALSFFHWVGCRPDFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDT 300
           NFPLK LSFFHWVGCRPD+DHNTVTYNAIARVLGRDDSIEAFWG+V+EMKNAGHEIDIDT
Sbjct: 241 NFPLKGLSFFHWVGCRPDYDHNTVTYNAIARVLGRDDSIEAFWGLVEEMKNAGHEIDIDT 300

Query: 301 YIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360
           YIKISRQFQRSKMMG+AVKLYELMMDGPY+PSLQDCSVLLRSISASDNPDLSLVFRVAKK
Sbjct: 301 YIKISRQFQRSKMMGDAVKLYELMMDGPYKPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360

Query: 361 YEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR 420
           +EATGYSLSKA+YDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR
Sbjct: 361 FEATGYSLSKAVYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR 420

Query: 421 LEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADLLDV 480
           LEEAC++LDEMEA+GC+PDIKTWTILIQGHCT NEVDKALVCFAKMIE+NCDPDADLLDV
Sbjct: 421 LEEACEVLDEMEAQGCVPDIKTWTILIQGHCTANEVDKALVCFAKMIEKNCDPDADLLDV 480

Query: 481 LIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLIEKLLEVRKLEEAITLLRLMKKQ 540
           LI GFLGQ+KLDGAYQLLIELVNKAHLRPWQATYK LIEKLLEVRKLEEAI+LLRLMKKQ
Sbjct: 481 LISGFLGQKKLDGAYQLLIELVNKAHLRPWQATYKHLIEKLLEVRKLEEAISLLRLMKKQ 540

Query: 541 NYPPFSEPFVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLL 600
           NYPPF EPFV YISKFGTVEDAA+FLK LSSKEYPS+SAYLHVFNSFFNEGR SEAKDLL
Sbjct: 541 NYPPFPEPFVQYISKFGTVEDAAEFLKALSSKEYPSMSAYLHVFNSFFNEGRHSEAKDLL 600

Query: 601 FKCPHHIRKHSEVCKLFGSAESKST--DATKSSSKPLEVGT 640
           FKCPHHIRKHSE+CKLFGSAESKST    T + S P  +GT
Sbjct: 601 FKCPHHIRKHSEICKLFGSAESKSTTPTTTTTQSSPNPIGT 635

[Close]

BLAST of MS024270.1 vs. NCBI nr
Match: KAG7021423.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1111.3 bits (2873), Expect = 0.0e+00
Identity = 561/644 (87.11%), Postives = 595/644 (92.39%), Query Frame = 0


Query: 1   MTRRTAILTSLRLANSFLSAQISSTRSLYPQVTRFSPTSSVSHRSHFLDFKSTHPLLFFS 60
           M RR AILTSL LANS     + STRS Y QVTRF P SS+SH+S F  F +   +LFFS
Sbjct: 1   MARRKAILTSLTLANS-----LYSTRSCYSQVTRFLP-SSLSHQSRFPPFTTNPRILFFS 60

Query: 61  SKPHSLLQFVLANDWSQDLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKN 120
           SKPHSLL+ VLANDWS+ LE ELETLNPTLTHET+VYVLKRLDKEPQKAS FF+WACGKN
Sbjct: 61  SKPHSLLELVLANDWSETLETELETLNPTLTHETMVYVLKRLDKEPQKASDFFDWACGKN 120

Query: 121 GFTQSSSIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADA 180
           G TQSS IYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLT+LG+L+RAKKAADA
Sbjct: 121 GSTQSSPIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTILGVLKRAKKAADA 180

Query: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELR 240
           TALTHFYNRMLQENAMDSVVQKVVNIVL SEW++DVAE LEGLGIVLSD+FVIR LKELR
Sbjct: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLQSEWNNDVAEKLEGLGIVLSDSFVIRVLKELR 240

Query: 241 NFPLKALSFFHWVGCRPDFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDT 300
           NFPLK LSFFHWVGCRPD+DHNTVTYNAIARVLGRDDSIEAFWG+V+EMKNAGHEIDIDT
Sbjct: 241 NFPLKGLSFFHWVGCRPDYDHNTVTYNAIARVLGRDDSIEAFWGLVEEMKNAGHEIDIDT 300

Query: 301 YIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360
           YIKISRQFQRSKMMG+AVKLYELMMDGPY+PSLQDCSVLLRSISASDNPDLSLVFRVAKK
Sbjct: 301 YIKISRQFQRSKMMGDAVKLYELMMDGPYKPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360

Query: 361 YEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR 420
           +EATGYSLSKA+YDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR
Sbjct: 361 FEATGYSLSKAVYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR 420

Query: 421 LEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADLLDV 480
           LEEAC++LDEMEA+GC+PDIKTWTILIQGHCT NEVDKALVCFAKMIE+NCDPDADLLDV
Sbjct: 421 LEEACEVLDEMEAQGCVPDIKTWTILIQGHCTANEVDKALVCFAKMIEKNCDPDADLLDV 480

Query: 481 LIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLIEKLLEVRKLEEAITLLRLMKKQ 540
           LI GFLGQ+KLDGAYQLLIELVNKAHLRPWQATYK LIEKLLEVRKLEEAI+LLRLMKKQ
Sbjct: 481 LISGFLGQKKLDGAYQLLIELVNKAHLRPWQATYKHLIEKLLEVRKLEEAISLLRLMKKQ 540

Query: 541 NYPPFSEPFVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLL 600
           NYPPF EPFV YISKFGTVEDAA+FLK LSSKEYPS+SAYLHVFNSFFNEGR SEAKDLL
Sbjct: 541 NYPPFPEPFVQYISKFGTVEDAAEFLKALSSKEYPSMSAYLHVFNSFFNEGRHSEAKDLL 600

Query: 601 FKCPHHIRKHSEVCKLFGSAESKS-----TDATKSSSKPLEVGT 640
           FKCPHHIRKHSE+CKLFGSAESKS     T  T + S P  +GT
Sbjct: 601 FKCPHHIRKHSEICKLFGSAESKSTTPTTTTTTTTQSSPNPIGT 638

[Close]

BLAST of MS024270.1 vs. ExPASy Swiss-Prot
Match: Q9STK5 (Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g48250 PE=2 SV=1)

HSP 1 Score: 723.8 bits (1867), Expect = 1.7e-207
Identity = 363/623 (58.27%), Postives = 467/623 (74.96%), Query Frame = 0


Query: 1   MTRRTAILTSLRLANSFLSAQISSTRSLYPQVTRFSPTSSVSHRSHFLDFKSTHPLLFFS 60
           M R  AIL+SLR A S +S +   +RS   +V   S  SS       +  +       FS
Sbjct: 1   MYRSMAILSSLRHAYSQISTRSYLSRS---KVGFSSNLSSPLDSFAIVPSRFLWKFRTFS 60

Query: 61  SKPHSLLQFVLANDWSQDLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKN 120
           SKP S+LQ VL NDWS+++E  L   + +LTHET +YVL++L+K P+KA  F +W    +
Sbjct: 61  SKPDSMLQLVLENDWSKEVEEGLRKPDMSLTHETAIYVLRKLEKYPEKAYYFLDWVLRDS 120

Query: 121 GFTQSSSIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADA 180
           G + S+ +YSI+LRI VQ  SMK+FW+TLR MK+ GFYLDE+TY T+ G L + K  ADA
Sbjct: 121 GLSPSTPLYSIMLRILVQQRSMKRFWMTLREMKQGGFYLDEDTYKTIYGELSKEKSKADA 180

Query: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELR 240
            A+ HFY RML+ENAM  V  +V  +V   +WS +V   L+ + +VLSDNFVIR LKELR
Sbjct: 181 VAVAHFYERMLKENAMSVVAGEVSAVVTKGDWSCEVERELQEMKLVLSDNFVIRVLKELR 240

Query: 241 NFPLKALSFFHWV---GCRPDFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEID 300
             PLKAL+FFHWV   G    + H+TVTYNA  RVL R +S+  FW VVDEMK AG+++D
Sbjct: 241 EHPLKALAFFHWVGGGGSSSGYQHSTVTYNAALRVLARPNSVAEFWSVVDEMKTAGYDMD 300

Query: 301 IDTYIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVLLRSISASDNPDLSLVFRV 360
           +DTYIK+SRQFQ+S+MM E VKLYE MMDGP++PS+QDCS+LLR +S S NPDL LVFRV
Sbjct: 301 LDTYIKVSRQFQKSRMMAETVKLYEYMMDGPFKPSIQDCSLLLRYLSGSPNPDLDLVFRV 360

Query: 361 AKKYEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCK 420
           ++KYE+TG SLSKA+YDGIHRSLTS G+FDEAE I K+MRNAGYEPDN+TYSQLVFGLCK
Sbjct: 361 SRKYESTGKSLSKAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCK 420

Query: 421 ARRLEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADL 480
           A+RLEEA  +LD+MEA+GC PDIKTWTILIQGHC  NE+DKAL CFA M+E+  D D++L
Sbjct: 421 AKRLEEARGVLDQMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANMLEKGFDIDSNL 480

Query: 481 LDVLIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLIEKLLEVRKLEEAITLLRLM 540
           LDVLIDGF+   K +GA   L+E+V  A+++PWQ+TYK LI+KLL+++K EEA+ LL++M
Sbjct: 481 LDVLIDGFVIHNKFEGASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKKSEEALDLLQMM 540

Query: 541 KKQNYPPFSEPFVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAK 600
           KKQNYP ++E F  Y++KFGT+EDA  FL VLSSK+ PS +AY HV  +F+ EGR ++AK
Sbjct: 541 KKQNYPAYAEAFDGYLAKFGTLEDAKKFLDVLSSKDSPSFAAYFHVIEAFYREGRLTDAK 600

Query: 601 DLLFKCPHHIRKHSEVCKLFGSA 621
           +LLF CPHH + H ++ +LFG+A
Sbjct: 601 NLLFICPHHFKTHPKISELFGAA 620

[Close]

BLAST of MS024270.1 vs. ExPASy Swiss-Prot
Match: Q9M891 (Pentatricopeptide repeat-containing protein At3g02490, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g02490 PE=2 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 7.8e-83
Identity = 178/568 (31.34%), Postives = 303/568 (53.35%), Query Frame = 0


Query: 78  DLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKNGFTQSSSIYSILLRIFV 137
           ++  EL++ +  ++HE  + VL+ L+  P  A  FF W         SS  Y+ +LRIF 
Sbjct: 96  EITKELDSNDVVISHELALRVLRELESSPDVAGRFFKWGLEAYPQKLSSKSYNTMLRIFG 155

Query: 138 QNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADATALTHFYNRMLQENAMD 197
            N  + +FW  +  MK++G  +       +    ++     D   L   +     +N++D
Sbjct: 156 VNGLVDEFWRLVDDMKKKGHGVSANVRDRVGDKFKKDGLENDLERLKELFASGSMDNSVD 215

Query: 198 SVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELRNFPLKALSFFHWVGCRP 257
            V  +V  IV+   W +DV + L  L +    + V   L++L   P KAL FF W+    
Sbjct: 216 KVCNRVCKIVMKEVWGADVEKQLRDLKLEFKSDVVKMVLEKLDVDPRKALLFFRWIDESG 275

Query: 258 DFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDTYIKISRQFQRSKMMGEA 317
            F H+  TYNA+ARVLG++  ++ F  +++E+++AG+E++++TY+++S +F ++KM+ EA
Sbjct: 276 SFKHDEKTYNAMARVLGKEKFLDRFQHMIEEIRSAGYEMEMETYVRVSARFCQTKMIKEA 335

Query: 318 VKLYELMMDGPY--RPSLQDCSVLLRSISASDNPDLSLVFRVAKKYEATGYSLSKAIYDG 377
           V+L+E  M G     P+   CS+LL+ I  +   D+ L  R  K Y   G  +   +   
Sbjct: 336 VELFEFAMAGSISNTPTPHCCSLLLKKIVTAKKLDMDLFTRTLKAYTGNGNVVPDVMLQH 395

Query: 378 IHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARRLEEACKLLDEMEAEG 437
           + +SL S  +F ++  ++K+M   GY P     S +  GL +  + +EA +L++ MEA G
Sbjct: 396 VLKSLRSVDRFGQSNEVLKAMNEGGYVPSGDLQSVIASGLSRKGKKDEANELVNFMEASG 455

Query: 438 CIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDAD-LLDVLIDGFLGQRKLDGA 497
              D K    L++GHC   ++++A  CF KMI +     A    + L+  +    +    
Sbjct: 456 NHLDDKAMASLVEGHCDAKDLEEASECFKKMIGKEGVSYAGYAFEKLVLAYCNSFQARDV 515

Query: 498 YQLLIELVNKAHLRPWQATYKQLIEKLLEVR-----KLEEAITLLRLMKKQNYPPFSEPF 557
           Y+L  ELV +  L+PW +TYK ++  LL  +       EEA++LL +M+   +PPF +PF
Sbjct: 516 YKLFSELVKQNQLKPWHSTYKIMVRNLLMKKVARDGGFEEALSLLPMMRNHGFPPFVDPF 575

Query: 558 VLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLLFKCPHHIRK 617
           + Y+S  GT  +A  FLK ++SK++PS S  L VF +     R SEA+DLL   P +IR+
Sbjct: 576 MDYLSNSGTSAEAFAFLKAVTSKKFPSNSMVLRVFEAMLKSARHSEAQDLLSMSPSYIRR 635

Query: 618 HSEVCKLFGSAESKSTDATKSSSKPLEV 638
           ++EV +LF + + +     K    P ++
Sbjct: 636 NAEVLELFNTMKPEKCSLEKPLPAPAQI 663

[Close]

BLAST of MS024270.1 vs. ExPASy Swiss-Prot
Match: Q8LPF1 (Pentatricopeptide repeat-containing protein At5g15980, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g15980 PE=2 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 3.3e-81
Identity = 174/561 (31.02%), Postives = 298/561 (53.12%), Query Frame = 0


Query: 78  DLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKNGFTQSSSIYSILLRIFV 137
           ++  ELE+    ++ +  + VL++L+  P  A  FF W    +    SS  Y+++LRI  
Sbjct: 102 EIRKELESSGVVISQDLALKVLRKLESNPDVAKSFFQWIKEASPEELSSKNYNMMLRILG 161

Query: 138 QNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADATALTHFYNRMLQENAMD 197
            N  + +FW  + VMK++G  L       +    ++    +D   L   +     +N+ +
Sbjct: 162 GNGLVDEFWGLVDVMKKKGHGLSANVRDKVGDKFQKDGLESDLLRLRKLFTSDCLDNSAE 221

Query: 198 SVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELRNFPLKALSFFHWVGCRP 257
           +V  +V  IV+  EW  DV + +  L +    + V   ++ L   P KAL FF W+    
Sbjct: 222 NVCDRVCKIVMKEEWGDDVEKRVRDLNVEFKSDLVKMIVERLDVEPRKALLFFRWIDESD 281

Query: 258 DFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDTYIKISRQFQRSKMMGEA 317
            F H+  TYNA+ARVLG++  ++ F  +V EM++AG+E++I+TY+++S +F ++K++ EA
Sbjct: 282 LFKHDEKTYNAMARVLGKEKFLDRFQNIVVEMRSAGYEVEIETYVRVSTRFCQTKLIKEA 341

Query: 318 VKLYELMMDG---PYRPSLQDCSVLLRSISASDNPDLSLVFRVAKKYEATGYSLSKAIYD 377
           V L+E+ M G      P+     +LL+ I  +   D+ L  R  K Y   G +L+ ++  
Sbjct: 342 VDLFEIAMAGSSSSNNPTPHCFCLLLKKIVTAKILDMDLFSRAVKVYTKNGNALTDSLLK 401

Query: 378 GIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARRLEEACKLLDEMEAE 437
            + +SL S  + +++  ++K M+  GY P     S +   L +  + +EA + +D ME+ 
Sbjct: 402 SVLKSLRSVDRVEQSNELLKEMKRGGYVPSGDMQSMIASSLSRKGKKDEADEFVDFMESS 461

Query: 438 GCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADL-LDVLIDGFLGQRKLDG 497
           G   D K    L++G+C +  +D+ALVCF KM+       AD   + L+  +  + ++  
Sbjct: 462 GNNLDDKAMASLVEGYCDSGNLDEALVCFEKMVGNTGVSYADYSFEKLVLAYCNKNQVRD 521

Query: 498 AYQLLIELVNKAHLRPWQATYKQLIEKLLEVR-----KLEEAITLLRLMKKQNYPPFSEP 557
           AY+LL   V K  L+P  +TYK L+  LL  +       EEA++LL +MK   +PPF +P
Sbjct: 522 AYKLLSAQVTKNQLKPRHSTYKSLVTNLLTKKIARDGGFEEALSLLPIMKDHGFPPFIDP 581

Query: 558 FVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLLFKCPHHIR 617
           F+ Y S  G   +A  FLK ++S  +P +S  L VF +     R SEA+DLL  CP++IR
Sbjct: 582 FMSYFSSTGKSTEALGFLKAMTSNNFPYISVVLRVFETMMKSARHSEAQDLLSLCPNYIR 641

Query: 618 KHSEVCKLFGSAESKSTDATK 630
            + +V +LF + +   +   K
Sbjct: 642 NNPDVLELFNTMKPNESAVEK 662

[Close]

BLAST of MS024270.1 vs. ExPASy Swiss-Prot
Match: Q9LZP3 (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g62470 PE=2 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 7.6e-30
Identity = 94/382 (24.61%), Postives = 180/382 (47.12%), Query Frame = 0


Query: 220 LEGLGIVLSDNFVIRALKELRNFPLKALSFFHWVGCRPDFDHNTVTYNAIARVLGRDDSI 279
           L+ + + LS + ++  L+  R+    A  FF W   R  F H++ TYN++  +L +    
Sbjct: 152 LDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQF 211

Query: 280 EAFWGVVDEMKNAGHEIDIDTYIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVL 339
           E    V++EM   G  + ++T+    + F  +K   +AV ++ELM    ++  ++  + L
Sbjct: 212 ETMVSVLEEMGTKG-LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCL 271

Query: 340 LRSIS-ASDNPDLSLVFRVAKKYEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRN 399
           L S+  A    +  ++F   K+     ++ +   Y  +           EA  I   M +
Sbjct: 272 LDSLGRAKLGKEAQVLFDKLKE----RFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMID 331

Query: 400 AGYEPDNVTYSQLVFGLCKARRLEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDK 459
            G +PD V ++ ++ GL ++R+  +A KL   M+++G  P+++++TI+I+  C  + ++ 
Sbjct: 332 QGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMET 391

Query: 460 ALVCFAKMIERNCDPDADLLDVLIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLI 519
           A+  F  M++    PDA +   LI GF  Q+KLD  Y+LL E+  K H  P   TY  LI
Sbjct: 392 AIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGH-PPDGKTYNALI 451

Query: 520 EKLLEVRKLEEAITLLRLMKKQNYPPFSEPFVLYISKFGTVED----AADFLKVLSSKEY 579
           + +   +  E A  +   M +    P    F + +  +    +     A + +++     
Sbjct: 452 KLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGIC 511

Query: 580 PSVSAYLHVFNSFFNEGRCSEA 597
           P  ++Y  +      EG+  EA
Sbjct: 512 PDDNSYTVLIRGLIGEGKSREA 527

[Close]

BLAST of MS024270.1 vs. ExPASy Swiss-Prot
Match: Q9LEQ7 (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g14820 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-28
Identity = 92/382 (24.08%), Postives = 179/382 (46.86%), Query Frame = 0


Query: 220 LEGLGIVLSDNFVIRALKELRNFPLKALSFFHWVGCRPDFDHNTVTYNAIARVLGRDDSI 279
           L+ + + LS + ++  L+  R+    A  FF W   R  F H++ TYN++  +L +    
Sbjct: 151 LDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQF 210

Query: 280 EAFWGVVDEMKNAGHEIDIDTYIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVL 339
           E    V++EM   G  + ++T+    + F  +K   +AV ++ELM    ++  ++  + L
Sbjct: 211 ETMVSVLEEMGTKG-LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCL 270

Query: 340 LRSIS-ASDNPDLSLVFRVAKKYEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRN 399
           L S+  A    +  ++F   K+     ++ +   Y  +           EA  I   M +
Sbjct: 271 LDSLGRAKLGKEAQVLFDKLKE----RFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMID 330

Query: 400 AGYEPDNVTYSQLVFGLCKARRLEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDK 459
            G +PD V ++ ++ GL ++ +  +A KL   M+++G  P+++++TI+I+  C  + ++ 
Sbjct: 331 HGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMET 390

Query: 460 ALVCFAKMIERNCDPDADLLDVLIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLI 519
           A+  F  M++    PDA +   LI GF  Q+KLD  Y+LL E+  K H  P   TY  LI
Sbjct: 391 AIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGH-PPDGKTYNALI 450

Query: 520 EKLLEVRKLEEAITLLRLMKKQNYPPFSEPFVLYISKFGTVED----AADFLKVLSSKEY 579
           + +   +  E    +   M +    P    F + +  +    +     A + +++     
Sbjct: 451 KLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGIC 510

Query: 580 PSVSAYLHVFNSFFNEGRCSEA 597
           P  ++Y  +     +EG+  EA
Sbjct: 511 PDDNSYTVLIRGLISEGKSREA 526

[Close]

BLAST of MS024270.1 vs. ExPASy TrEMBL
Match: A0A6J1C114 (pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111007295 PE=4 SV=1)

HSP 1 Score: 1258.8 bits (3256), Expect = 0.0e+00
Identity = 637/639 (99.69%), Postives = 637/639 (99.69%), Query Frame = 0


Query: 1   MTRRTAILTSLRLANSFLSAQISSTRSLYPQVTRFSPTSSVSHRSHFLDFKSTHPLLFFS 60
           MTRRTAILTSLRLANSFLSAQISSTRSLYPQVTRFSPT SVSHRSHFLDFKSTHPLLFFS
Sbjct: 1   MTRRTAILTSLRLANSFLSAQISSTRSLYPQVTRFSPT-SVSHRSHFLDFKSTHPLLFFS 60

Query: 61  SKPHSLLQFVLANDWSQDLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKN 120
           SKPHSLLQFVLANDWSQDLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKN
Sbjct: 61  SKPHSLLQFVLANDWSQDLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKN 120

Query: 121 GFTQSSSIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADA 180
           GFTQSSSIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADA
Sbjct: 121 GFTQSSSIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADA 180

Query: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELR 240
           TALTHFYNRMLQENAMDSVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELR
Sbjct: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELR 240

Query: 241 NFPLKALSFFHWVGCRPDFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDT 300
           NFPLKALSFFHWVGCR DFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDT
Sbjct: 241 NFPLKALSFFHWVGCRLDFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDT 300

Query: 301 YIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360
           YIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVLLRSISASDNPDLSLVFRVAKK
Sbjct: 301 YIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360

Query: 361 YEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR 420
           YEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR
Sbjct: 361 YEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR 420

Query: 421 LEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADLLDV 480
           LEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADLLDV
Sbjct: 421 LEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADLLDV 480

Query: 481 LIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLIEKLLEVRKLEEAITLLRLMKKQ 540
           LIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLIEKLLEVRKLEEAITLLRLMKKQ
Sbjct: 481 LIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLIEKLLEVRKLEEAITLLRLMKKQ 540

Query: 541 NYPPFSEPFVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLL 600
           NYPPFSEPFVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLL
Sbjct: 541 NYPPFSEPFVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLL 600

Query: 601 FKCPHHIRKHSEVCKLFGSAESKSTDATKSSSKPLEVGT 640
           FKCPHHIRKHSEVCKLFGSAESKSTDATKSSSKPLEVGT
Sbjct: 601 FKCPHHIRKHSEVCKLFGSAESKSTDATKSSSKPLEVGT 638

[Close]

BLAST of MS024270.1 vs. ExPASy TrEMBL
Match: A0A6J1F5I7 (pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441023 PE=3 SV=1)

HSP 1 Score: 1114.4 bits (2881), Expect = 0.0e+00
Identity = 561/640 (87.66%), Postives = 596/640 (93.12%), Query Frame = 0


Query: 1   MTRRTAILTSLRLANSFLSAQISSTRSLYPQVTRFSPTSSVSHRSHFLDFKSTHPLLFFS 60
           M RR AILTSL LANS     + STRS Y QVTRF P SS+SH+S F  F + H +LFFS
Sbjct: 1   MARRKAILTSLTLANS-----LYSTRSCYSQVTRFLP-SSLSHQSRFPPFTTNHRILFFS 60

Query: 61  SKPHSLLQFVLANDWSQDLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKN 120
           SKPHSLL+ VLANDWS+ LE ELETLNPTLTHET+VYVLKRLDKEPQKAS FF+WACGKN
Sbjct: 61  SKPHSLLELVLANDWSETLETELETLNPTLTHETMVYVLKRLDKEPQKASDFFDWACGKN 120

Query: 121 GFTQSSSIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADA 180
           G TQSS IYSILLRI VQNESMKQFWITLRVMKERGFYLDEETYLT+LG+L+RAKKAADA
Sbjct: 121 GSTQSSPIYSILLRIVVQNESMKQFWITLRVMKERGFYLDEETYLTILGVLKRAKKAADA 180

Query: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELR 240
           TALTHFYNRMLQENAMDSVVQKVVNIVL SEW++DVAE LEGLGIVLSD+FVIR LKELR
Sbjct: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLRSEWNNDVAEKLEGLGIVLSDSFVIRVLKELR 240

Query: 241 NFPLKALSFFHWVGCRPDFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDT 300
           NFPLK LSFFHWVGCRPD+DHNTVTYNAIARVLGRDDSIEAFWG+V+EMKNAGHEIDIDT
Sbjct: 241 NFPLKGLSFFHWVGCRPDYDHNTVTYNAIARVLGRDDSIEAFWGLVEEMKNAGHEIDIDT 300

Query: 301 YIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360
           YIKISRQFQRSKMMG+AVKLYELMMDGPY+PSLQDCSVLLRSISASDNPDLSLVFRVAKK
Sbjct: 301 YIKISRQFQRSKMMGDAVKLYELMMDGPYKPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360

Query: 361 YEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR 420
           +EATGYSLSKA+YDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR
Sbjct: 361 FEATGYSLSKAVYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR 420

Query: 421 LEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADLLDV 480
           LEEAC++LDEMEA+GC+PDIKTWTILIQGHCT NEVDKALVCFAKMIE+NCDPDADLLDV
Sbjct: 421 LEEACEVLDEMEAQGCVPDIKTWTILIQGHCTANEVDKALVCFAKMIEKNCDPDADLLDV 480

Query: 481 LIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLIEKLLEVRKLEEAITLLRLMKKQ 540
           LI GFLGQ+KLDGAYQLLIELVNKAHLRPWQATYK LIEKLLEVRKLEEAI+LLRLMKKQ
Sbjct: 481 LISGFLGQKKLDGAYQLLIELVNKAHLRPWQATYKHLIEKLLEVRKLEEAISLLRLMKKQ 540

Query: 541 NYPPFSEPFVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLL 600
           NYPPF EPFV YISKFGTVEDAA+FLK LSSKEYPS+SAYLHVFNSFFNEGR SEAKDLL
Sbjct: 541 NYPPFPEPFVQYISKFGTVEDAAEFLKALSSKEYPSMSAYLHVFNSFFNEGRHSEAKDLL 600

Query: 601 FKCPHHIRKHSEVCKLFGSAESKSTDATKSS-SKPLEVGT 640
           FKCPHHIRKHSE+CKLFGSAESKST  T ++ S P  +GT
Sbjct: 601 FKCPHHIRKHSEICKLFGSAESKSTTTTTTTQSSPNPIGT 634

[Close]

BLAST of MS024270.1 vs. ExPASy TrEMBL
Match: A0A6J1I0W9 (pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111468041 PE=4 SV=1)

HSP 1 Score: 1104.0 bits (2854), Expect = 0.0e+00
Identity = 556/642 (86.60%), Postives = 594/642 (92.52%), Query Frame = 0


Query: 1   MTRRTAILTSLRLANSFLSAQISSTRSLYPQVTRFSPTSSVSHRSHFLDFKSTHPLLFFS 60
           M RR AILTSL L NS     + STRS Y QVTRF P SS+SH+S F  F + H +LFFS
Sbjct: 1   MARRKAILTSLMLENS-----LFSTRSSYSQVTRFLP-SSLSHQSRFPPFTTNHRILFFS 60

Query: 61  SKPHSLLQFVLANDWSQDLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKN 120
           SKPHSLL+ VLANDWS+ LE ELETLNPTLTHET+VYVLKRLDKEPQKAS FFNWACGKN
Sbjct: 61  SKPHSLLELVLANDWSEILETELETLNPTLTHETMVYVLKRLDKEPQKASDFFNWACGKN 120

Query: 121 GFTQSSSIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADA 180
           G TQSS IYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLT+LG+L+RAKKAADA
Sbjct: 121 GSTQSSPIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTILGVLKRAKKAADA 180

Query: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELR 240
           TALTHFYNRMLQENAMDSVVQKVVNIVL SEW++DVAE LEGLGIVLSD+FVIRALKELR
Sbjct: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLRSEWNNDVAEKLEGLGIVLSDSFVIRALKELR 240

Query: 241 NFPLKALSFFHWVGCRPDFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDT 300
           NFPLK LSFFHWVGCR D+DHNTVTYNAIARVLGRDDSIEAFWG+V+EMKNAGHEIDIDT
Sbjct: 241 NFPLKGLSFFHWVGCRSDYDHNTVTYNAIARVLGRDDSIEAFWGLVEEMKNAGHEIDIDT 300

Query: 301 YIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360
           YIKISRQFQR+KM+G+AVKLYELMMDGPY+PSLQDCSVLLRSISASDNPDLSLVFRVAKK
Sbjct: 301 YIKISRQFQRTKMIGDAVKLYELMMDGPYKPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360

Query: 361 YEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR 420
           +EATGYSLSKA+YDGIHRSLTSAGKFDEAENIVKS+RNAGYEPDNVTYSQLVFGLCKARR
Sbjct: 361 FEATGYSLSKAVYDGIHRSLTSAGKFDEAENIVKSLRNAGYEPDNVTYSQLVFGLCKARR 420

Query: 421 LEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADLLDV 480
           LEEAC++LDEMEA+GC+PDIKTWTILIQGHCT NEVDKALVCFAKMIE+NCDPDADLLDV
Sbjct: 421 LEEACEVLDEMEAQGCVPDIKTWTILIQGHCTANEVDKALVCFAKMIEKNCDPDADLLDV 480

Query: 481 LIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLIEKLLEVRKLEEAITLLRLMKKQ 540
           LI GFLGQ+KLDGAYQLLIELVNKAHLRPWQATYK LIEKLLEVRKLEEAI+LL LMKKQ
Sbjct: 481 LISGFLGQKKLDGAYQLLIELVNKAHLRPWQATYKHLIEKLLEVRKLEEAISLLSLMKKQ 540

Query: 541 NYPPFSEPFVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLL 600
           NYPP  EPFV YISKFGTVEDAA+FLK LSSKEYPS+SAYLH+FNSFFNEGR SEAKDLL
Sbjct: 541 NYPPSPEPFVQYISKFGTVEDAAEFLKALSSKEYPSMSAYLHIFNSFFNEGRHSEAKDLL 600

Query: 601 FKCPHHIRKHSEVCKLFGSAESKSTDATKSS---SKPLEVGT 640
           FKCPHHIRKHSE+CKLFGSAESKST  T ++   S P  +GT
Sbjct: 601 FKCPHHIRKHSEICKLFGSAESKSTTTTTTTTTQSSPNPIGT 636

[Close]

BLAST of MS024270.1 vs. ExPASy TrEMBL
Match: A0A0A0LNT7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G003530 PE=4 SV=1)

HSP 1 Score: 1077.0 bits (2784), Expect = 0.0e+00
Identity = 539/636 (84.75%), Postives = 581/636 (91.35%), Query Frame = 0


Query: 1   MTRRTAILTSLRLANSFLSAQISSTRSLYPQVTRFSPTSSVSHRSHFLDFKSTHPLLFFS 60
           MTRR AI TSLRLANSF      STRS YPQVTRFSP+S VSH+S    F   HP+LFFS
Sbjct: 1   MTRRNAIFTSLRLANSFF-----STRSRYPQVTRFSPSSYVSHQSLVSHFTINHPVLFFS 60

Query: 61  SKPHSLLQFVLANDWSQDLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKN 120
           S P SLLQ V  NDWS+ LE ELETLNPTLTHETVVYVLKRLDK+PQKAS FFNWA GKN
Sbjct: 61  SNPQSLLQLVSTNDWSEMLETELETLNPTLTHETVVYVLKRLDKQPQKASEFFNWASGKN 120

Query: 121 GFTQSSSIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADA 180
           G TQSSSIYS+LLRIFVQNESMK FWITLR+MKERGFYLDEETY T+LG+LR++KKAADA
Sbjct: 121 GSTQSSSIYSMLLRIFVQNESMKLFWITLRLMKERGFYLDEETYKTILGVLRKSKKAADA 180

Query: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELR 240
           T LTHFYNRMLQ+NAMDSVVQKVV+IVLGS+WS+DV   LE LGI LSDNFVIR LKELR
Sbjct: 181 TGLTHFYNRMLQQNAMDSVVQKVVDIVLGSDWSNDVPGKLEELGIALSDNFVIRVLKELR 240

Query: 241 NFPLKALSFFHWVGCRPDFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDT 300
           N PLKALSFFHWVGCRPD+DHNTV+YNAIARVLGRDDSIEAFWGV++EMK+A HEIDIDT
Sbjct: 241 NSPLKALSFFHWVGCRPDYDHNTVSYNAIARVLGRDDSIEAFWGVIEEMKHANHEIDIDT 300

Query: 301 YIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360
           YIKISRQFQ+SKMMGEAVKLYELMMDGPY+PSLQDCSVLLR+I+ASDNPDLSLV+RVAKK
Sbjct: 301 YIKISRQFQKSKMMGEAVKLYELMMDGPYKPSLQDCSVLLRTIAASDNPDLSLVYRVAKK 360

Query: 361 YEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR 420
           +EATGYSLSKA+YDGIHRSLTS GKFD+AENIVKSMRNAGYEPDNVTYSQLVFGLCKARR
Sbjct: 361 FEATGYSLSKAMYDGIHRSLTSTGKFDDAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR 420

Query: 421 LEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADLLDV 480
           LEEA K+LDEMEA+GCIPDIKTWTILIQGHC  NE+D ALVCFAKMIE+NCDPDADLLDV
Sbjct: 421 LEEARKVLDEMEAQGCIPDIKTWTILIQGHCNANELDIALVCFAKMIEKNCDPDADLLDV 480

Query: 481 LIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLIEKLLEVRKLEEAITLLRLMKKQ 540
           LI GFL Q+KL+GAYQLLIEL NKAH+RPWQATYKQLI+ LLEVRKLEEAI LLRLMKKQ
Sbjct: 481 LISGFLNQKKLNGAYQLLIELTNKAHVRPWQATYKQLIKNLLEVRKLEEAIALLRLMKKQ 540

Query: 541 NYPPFSEPFVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLL 600
           NYPPF EPFV YISKFGTV+DA DFLKVLSSKEYPSVSAYLH+FNSFFNEGR SEAKDLL
Sbjct: 541 NYPPFPEPFVQYISKFGTVQDADDFLKVLSSKEYPSVSAYLHIFNSFFNEGRYSEAKDLL 600

Query: 601 FKCPHHIRKHSEVCKLFGSAESKSTDATKSSSKPLE 637
           FKCPHHIRKH+EVCKLFGSAES +T AT+SSS P+E
Sbjct: 601 FKCPHHIRKHNEVCKLFGSAESNTTAATQSSSNPIE 631

[Close]

BLAST of MS024270.1 vs. ExPASy TrEMBL
Match: A0A5A7UW70 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001030 PE=4 SV=1)

HSP 1 Score: 1055.4 bits (2728), Expect = 9.2e-305
Identity = 525/628 (83.60%), Postives = 576/628 (91.72%), Query Frame = 0


Query: 1   MTRRTAILTSLRLANSFLSAQISSTRSLYPQVTRFSPTSSVSHRSHFLDFKSTHPLLFFS 60
           MTRR AI TSLRLANSF      STRS YPQVTRFSP+S VSH+S    F+  HP+LFFS
Sbjct: 1   MTRRNAIFTSLRLANSFF-----STRSRYPQVTRFSPSSYVSHQSLIPHFRINHPVLFFS 60

Query: 61  SKPHSLLQFVLANDWSQDLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKN 120
           S PHSLL+ V  NDWS+ LE ELETLNPTLTHETVVYVLKRLDK+PQKAS FFNWA GKN
Sbjct: 61  SNPHSLLELVSTNDWSEMLETELETLNPTLTHETVVYVLKRLDKQPQKASDFFNWASGKN 120

Query: 121 GFTQSSSIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADA 180
           G TQSSSIYSILLRIFVQNESMK FWITLR+MKERGFYLDEETYLT+LG+LR+AKKAADA
Sbjct: 121 GSTQSSSIYSILLRIFVQNESMKLFWITLRLMKERGFYLDEETYLTILGVLRKAKKAADA 180

Query: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELR 240
           TAL HFYNRMLQENAMDSVVQKVV+IVLGS+WS+DVA  LE LGI LSDNFVIR LKELR
Sbjct: 181 TALAHFYNRMLQENAMDSVVQKVVHIVLGSDWSNDVAGKLEELGIALSDNFVIRVLKELR 240

Query: 241 NFPLKALSFFHWVGCRPDFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDT 300
           N PLKALSFF+WVGCRPD+DHNTV+YNAIARVL R+DSI+AFWGV++EMKNA  +IDIDT
Sbjct: 241 NSPLKALSFFNWVGCRPDYDHNTVSYNAIARVLARNDSIKAFWGVIEEMKNASLDIDIDT 300

Query: 301 YIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVLLRSISASDNPDLSLVFRVAKK 360
           YIKISRQFQ+SKMMG+AVKLYELMMDGPY+PSL DCS+LLR+I+ASDNPDLSLV+RVAKK
Sbjct: 301 YIKISRQFQKSKMMGDAVKLYELMMDGPYKPSLPDCSILLRTIAASDNPDLSLVYRVAKK 360

Query: 361 YEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARR 420
           +EA+GYSLSKAIYDGIHRSLTS GKFD+AE+IVKSMRNAGYEPDNVT+SQLVFGLCKARR
Sbjct: 361 FEASGYSLSKAIYDGIHRSLTSRGKFDDAEDIVKSMRNAGYEPDNVTFSQLVFGLCKARR 420

Query: 421 LEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADLLDV 480
           L+EA ++LDEMEA+GCIPDIKTWT+LIQGHC  N++D ALVCFAKMIE+NCDPDADLLDV
Sbjct: 421 LKEAREVLDEMEAQGCIPDIKTWTVLIQGHCNANKLDVALVCFAKMIEKNCDPDADLLDV 480

Query: 481 LIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLIEKLLEVRKLEEAITLLRLMKKQ 540
           LI+GFL Q+KLDGAYQLLIEL NKAH+RPWQATYK LI+ LLEVRKLEEA+ LLRLMKKQ
Sbjct: 481 LINGFLSQKKLDGAYQLLIELTNKAHVRPWQATYKHLIKNLLEVRKLEEAMALLRLMKKQ 540

Query: 541 NYPPFSEPFVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLL 600
           NYPPF EPFV YISKFGTV+DA DFLKVLSSKEYPSVSAYLH+FNSFFNEGR SEAKDLL
Sbjct: 541 NYPPFPEPFVQYISKFGTVQDADDFLKVLSSKEYPSVSAYLHIFNSFFNEGRYSEAKDLL 600

Query: 601 FKCPHHIRKHSEVCKLFGSAESKSTDAT 629
           FKCPHHIRKH+EVCKLFGSAESK+T AT
Sbjct: 601 FKCPHHIRKHNEVCKLFGSAESKTTGAT 623

[Close]

BLAST of MS024270.1 vs. TAIR 10
Match: AT3G48250.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 723.8 bits (1867), Expect = 1.2e-208
Identity = 363/623 (58.27%), Postives = 467/623 (74.96%), Query Frame = 0


Query: 1   MTRRTAILTSLRLANSFLSAQISSTRSLYPQVTRFSPTSSVSHRSHFLDFKSTHPLLFFS 60
           M R  AIL+SLR A S +S +   +RS   +V   S  SS       +  +       FS
Sbjct: 1   MYRSMAILSSLRHAYSQISTRSYLSRS---KVGFSSNLSSPLDSFAIVPSRFLWKFRTFS 60

Query: 61  SKPHSLLQFVLANDWSQDLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKN 120
           SKP S+LQ VL NDWS+++E  L   + +LTHET +YVL++L+K P+KA  F +W    +
Sbjct: 61  SKPDSMLQLVLENDWSKEVEEGLRKPDMSLTHETAIYVLRKLEKYPEKAYYFLDWVLRDS 120

Query: 121 GFTQSSSIYSILLRIFVQNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADA 180
           G + S+ +YSI+LRI VQ  SMK+FW+TLR MK+ GFYLDE+TY T+ G L + K  ADA
Sbjct: 121 GLSPSTPLYSIMLRILVQQRSMKRFWMTLREMKQGGFYLDEDTYKTIYGELSKEKSKADA 180

Query: 181 TALTHFYNRMLQENAMDSVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELR 240
            A+ HFY RML+ENAM  V  +V  +V   +WS +V   L+ + +VLSDNFVIR LKELR
Sbjct: 181 VAVAHFYERMLKENAMSVVAGEVSAVVTKGDWSCEVERELQEMKLVLSDNFVIRVLKELR 240

Query: 241 NFPLKALSFFHWV---GCRPDFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEID 300
             PLKAL+FFHWV   G    + H+TVTYNA  RVL R +S+  FW VVDEMK AG+++D
Sbjct: 241 EHPLKALAFFHWVGGGGSSSGYQHSTVTYNAALRVLARPNSVAEFWSVVDEMKTAGYDMD 300

Query: 301 IDTYIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVLLRSISASDNPDLSLVFRV 360
           +DTYIK+SRQFQ+S+MM E VKLYE MMDGP++PS+QDCS+LLR +S S NPDL LVFRV
Sbjct: 301 LDTYIKVSRQFQKSRMMAETVKLYEYMMDGPFKPSIQDCSLLLRYLSGSPNPDLDLVFRV 360

Query: 361 AKKYEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCK 420
           ++KYE+TG SLSKA+YDGIHRSLTS G+FDEAE I K+MRNAGYEPDN+TYSQLVFGLCK
Sbjct: 361 SRKYESTGKSLSKAVYDGIHRSLTSVGRFDEAEEITKAMRNAGYEPDNITYSQLVFGLCK 420

Query: 421 ARRLEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADL 480
           A+RLEEA  +LD+MEA+GC PDIKTWTILIQGHC  NE+DKAL CFA M+E+  D D++L
Sbjct: 421 AKRLEEARGVLDQMEAQGCFPDIKTWTILIQGHCKNNELDKALACFANMLEKGFDIDSNL 480

Query: 481 LDVLIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLIEKLLEVRKLEEAITLLRLM 540
           LDVLIDGF+   K +GA   L+E+V  A+++PWQ+TYK LI+KLL+++K EEA+ LL++M
Sbjct: 481 LDVLIDGFVIHNKFEGASIFLMEMVKNANVKPWQSTYKLLIDKLLKIKKSEEALDLLQMM 540

Query: 541 KKQNYPPFSEPFVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAK 600
           KKQNYP ++E F  Y++KFGT+EDA  FL VLSSK+ PS +AY HV  +F+ EGR ++AK
Sbjct: 541 KKQNYPAYAEAFDGYLAKFGTLEDAKKFLDVLSSKDSPSFAAYFHVIEAFYREGRLTDAK 600

Query: 601 DLLFKCPHHIRKHSEVCKLFGSA 621
           +LLF CPHH + H ++ +LFG+A
Sbjct: 601 NLLFICPHHFKTHPKISELFGAA 620

[Close]

BLAST of MS024270.1 vs. TAIR 10
Match: AT3G02490.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 309.7 bits (792), Expect = 5.5e-84
Identity = 178/568 (31.34%), Postives = 303/568 (53.35%), Query Frame = 0


Query: 78  DLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKNGFTQSSSIYSILLRIFV 137
           ++  EL++ +  ++HE  + VL+ L+  P  A  FF W         SS  Y+ +LRIF 
Sbjct: 96  EITKELDSNDVVISHELALRVLRELESSPDVAGRFFKWGLEAYPQKLSSKSYNTMLRIFG 155

Query: 138 QNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADATALTHFYNRMLQENAMD 197
            N  + +FW  +  MK++G  +       +    ++     D   L   +     +N++D
Sbjct: 156 VNGLVDEFWRLVDDMKKKGHGVSANVRDRVGDKFKKDGLENDLERLKELFASGSMDNSVD 215

Query: 198 SVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELRNFPLKALSFFHWVGCRP 257
            V  +V  IV+   W +DV + L  L +    + V   L++L   P KAL FF W+    
Sbjct: 216 KVCNRVCKIVMKEVWGADVEKQLRDLKLEFKSDVVKMVLEKLDVDPRKALLFFRWIDESG 275

Query: 258 DFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDTYIKISRQFQRSKMMGEA 317
            F H+  TYNA+ARVLG++  ++ F  +++E+++AG+E++++TY+++S +F ++KM+ EA
Sbjct: 276 SFKHDEKTYNAMARVLGKEKFLDRFQHMIEEIRSAGYEMEMETYVRVSARFCQTKMIKEA 335

Query: 318 VKLYELMMDGPY--RPSLQDCSVLLRSISASDNPDLSLVFRVAKKYEATGYSLSKAIYDG 377
           V+L+E  M G     P+   CS+LL+ I  +   D+ L  R  K Y   G  +   +   
Sbjct: 336 VELFEFAMAGSISNTPTPHCCSLLLKKIVTAKKLDMDLFTRTLKAYTGNGNVVPDVMLQH 395

Query: 378 IHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARRLEEACKLLDEMEAEG 437
           + +SL S  +F ++  ++K+M   GY P     S +  GL +  + +EA +L++ MEA G
Sbjct: 396 VLKSLRSVDRFGQSNEVLKAMNEGGYVPSGDLQSVIASGLSRKGKKDEANELVNFMEASG 455

Query: 438 CIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDAD-LLDVLIDGFLGQRKLDGA 497
              D K    L++GHC   ++++A  CF KMI +     A    + L+  +    +    
Sbjct: 456 NHLDDKAMASLVEGHCDAKDLEEASECFKKMIGKEGVSYAGYAFEKLVLAYCNSFQARDV 515

Query: 498 YQLLIELVNKAHLRPWQATYKQLIEKLLEVR-----KLEEAITLLRLMKKQNYPPFSEPF 557
           Y+L  ELV +  L+PW +TYK ++  LL  +       EEA++LL +M+   +PPF +PF
Sbjct: 516 YKLFSELVKQNQLKPWHSTYKIMVRNLLMKKVARDGGFEEALSLLPMMRNHGFPPFVDPF 575

Query: 558 VLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLLFKCPHHIRK 617
           + Y+S  GT  +A  FLK ++SK++PS S  L VF +     R SEA+DLL   P +IR+
Sbjct: 576 MDYLSNSGTSAEAFAFLKAVTSKKFPSNSMVLRVFEAMLKSARHSEAQDLLSMSPSYIRR 635

Query: 618 HSEVCKLFGSAESKSTDATKSSSKPLEV 638
           ++EV +LF + + +     K    P ++
Sbjct: 636 NAEVLELFNTMKPEKCSLEKPLPAPAQI 663

[Close]

BLAST of MS024270.1 vs. TAIR 10
Match: AT5G15980.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 304.3 bits (778), Expect = 2.3e-82
Identity = 174/561 (31.02%), Postives = 298/561 (53.12%), Query Frame = 0


Query: 78  DLENELETLNPTLTHETVVYVLKRLDKEPQKASGFFNWACGKNGFTQSSSIYSILLRIFV 137
           ++  ELE+    ++ +  + VL++L+  P  A  FF W    +    SS  Y+++LRI  
Sbjct: 102 EIRKELESSGVVISQDLALKVLRKLESNPDVAKSFFQWIKEASPEELSSKNYNMMLRILG 161

Query: 138 QNESMKQFWITLRVMKERGFYLDEETYLTMLGILRRAKKAADATALTHFYNRMLQENAMD 197
            N  + +FW  + VMK++G  L       +    ++    +D   L   +     +N+ +
Sbjct: 162 GNGLVDEFWGLVDVMKKKGHGLSANVRDKVGDKFQKDGLESDLLRLRKLFTSDCLDNSAE 221

Query: 198 SVVQKVVNIVLGSEWSSDVAENLEGLGIVLSDNFVIRALKELRNFPLKALSFFHWVGCRP 257
           +V  +V  IV+  EW  DV + +  L +    + V   ++ L   P KAL FF W+    
Sbjct: 222 NVCDRVCKIVMKEEWGDDVEKRVRDLNVEFKSDLVKMIVERLDVEPRKALLFFRWIDESD 281

Query: 258 DFDHNTVTYNAIARVLGRDDSIEAFWGVVDEMKNAGHEIDIDTYIKISRQFQRSKMMGEA 317
            F H+  TYNA+ARVLG++  ++ F  +V EM++AG+E++I+TY+++S +F ++K++ EA
Sbjct: 282 LFKHDEKTYNAMARVLGKEKFLDRFQNIVVEMRSAGYEVEIETYVRVSTRFCQTKLIKEA 341

Query: 318 VKLYELMMDG---PYRPSLQDCSVLLRSISASDNPDLSLVFRVAKKYEATGYSLSKAIYD 377
           V L+E+ M G      P+     +LL+ I  +   D+ L  R  K Y   G +L+ ++  
Sbjct: 342 VDLFEIAMAGSSSSNNPTPHCFCLLLKKIVTAKILDMDLFSRAVKVYTKNGNALTDSLLK 401

Query: 378 GIHRSLTSAGKFDEAENIVKSMRNAGYEPDNVTYSQLVFGLCKARRLEEACKLLDEMEAE 437
            + +SL S  + +++  ++K M+  GY P     S +   L +  + +EA + +D ME+ 
Sbjct: 402 SVLKSLRSVDRVEQSNELLKEMKRGGYVPSGDMQSMIASSLSRKGKKDEADEFVDFMESS 461

Query: 438 GCIPDIKTWTILIQGHCTTNEVDKALVCFAKMIERNCDPDADL-LDVLIDGFLGQRKLDG 497
           G   D K    L++G+C +  +D+ALVCF KM+       AD   + L+  +  + ++  
Sbjct: 462 GNNLDDKAMASLVEGYCDSGNLDEALVCFEKMVGNTGVSYADYSFEKLVLAYCNKNQVRD 521

Query: 498 AYQLLIELVNKAHLRPWQATYKQLIEKLLEVR-----KLEEAITLLRLMKKQNYPPFSEP 557
           AY+LL   V K  L+P  +TYK L+  LL  +       EEA++LL +MK   +PPF +P
Sbjct: 522 AYKLLSAQVTKNQLKPRHSTYKSLVTNLLTKKIARDGGFEEALSLLPIMKDHGFPPFIDP 581

Query: 558 FVLYISKFGTVEDAADFLKVLSSKEYPSVSAYLHVFNSFFNEGRCSEAKDLLFKCPHHIR 617
           F+ Y S  G   +A  FLK ++S  +P +S  L VF +     R SEA+DLL  CP++IR
Sbjct: 582 FMSYFSSTGKSTEALGFLKAMTSNNFPYISVVLRVFETMMKSARHSEAQDLLSLCPNYIR 641

Query: 618 KHSEVCKLFGSAESKSTDATK 630
            + +V +LF + +   +   K
Sbjct: 642 NNPDVLELFNTMKPNESAVEK 662

[Close]

BLAST of MS024270.1 vs. TAIR 10
Match: AT3G62470.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 133.7 bits (335), Expect = 5.4e-31
Identity = 94/382 (24.61%), Postives = 180/382 (47.12%), Query Frame = 0


Query: 220 LEGLGIVLSDNFVIRALKELRNFPLKALSFFHWVGCRPDFDHNTVTYNAIARVLGRDDSI 279
           L+ + + LS + ++  L+  R+    A  FF W   R  F H++ TYN++  +L +    
Sbjct: 152 LDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQF 211

Query: 280 EAFWGVVDEMKNAGHEIDIDTYIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVL 339
           E    V++EM   G  + ++T+    + F  +K   +AV ++ELM    ++  ++  + L
Sbjct: 212 ETMVSVLEEMGTKG-LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCL 271

Query: 340 LRSIS-ASDNPDLSLVFRVAKKYEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRN 399
           L S+  A    +  ++F   K+     ++ +   Y  +           EA  I   M +
Sbjct: 272 LDSLGRAKLGKEAQVLFDKLKE----RFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMID 331

Query: 400 AGYEPDNVTYSQLVFGLCKARRLEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDK 459
            G +PD V ++ ++ GL ++R+  +A KL   M+++G  P+++++TI+I+  C  + ++ 
Sbjct: 332 QGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMET 391

Query: 460 ALVCFAKMIERNCDPDADLLDVLIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLI 519
           A+  F  M++    PDA +   LI GF  Q+KLD  Y+LL E+  K H  P   TY  LI
Sbjct: 392 AIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGH-PPDGKTYNALI 451

Query: 520 EKLLEVRKLEEAITLLRLMKKQNYPPFSEPFVLYISKFGTVED----AADFLKVLSSKEY 579
           + +   +  E A  +   M +    P    F + +  +    +     A + +++     
Sbjct: 452 KLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGIC 511

Query: 580 PSVSAYLHVFNSFFNEGRCSEA 597
           P  ++Y  +      EG+  EA
Sbjct: 512 PDDNSYTVLIRGLIGEGKSREA 527

[Close]

BLAST of MS024270.1 vs. TAIR 10
Match: AT5G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 129.8 bits (325), Expect = 7.8e-30
Identity = 92/382 (24.08%), Postives = 179/382 (46.86%), Query Frame = 0


Query: 220 LEGLGIVLSDNFVIRALKELRNFPLKALSFFHWVGCRPDFDHNTVTYNAIARVLGRDDSI 279
           L+ + + LS + ++  L+  R+    A  FF W   R  F H++ TYN++  +L +    
Sbjct: 151 LDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQF 210

Query: 280 EAFWGVVDEMKNAGHEIDIDTYIKISRQFQRSKMMGEAVKLYELMMDGPYRPSLQDCSVL 339
           E    V++EM   G  + ++T+    + F  +K   +AV ++ELM    ++  ++  + L
Sbjct: 211 ETMVSVLEEMGTKG-LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCL 270

Query: 340 LRSIS-ASDNPDLSLVFRVAKKYEATGYSLSKAIYDGIHRSLTSAGKFDEAENIVKSMRN 399
           L S+  A    +  ++F   K+     ++ +   Y  +           EA  I   M +
Sbjct: 271 LDSLGRAKLGKEAQVLFDKLKE----RFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMID 330

Query: 400 AGYEPDNVTYSQLVFGLCKARRLEEACKLLDEMEAEGCIPDIKTWTILIQGHCTTNEVDK 459
            G +PD V ++ ++ GL ++ +  +A KL   M+++G  P+++++TI+I+  C  + ++ 
Sbjct: 331 HGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMET 390

Query: 460 ALVCFAKMIERNCDPDADLLDVLIDGFLGQRKLDGAYQLLIELVNKAHLRPWQATYKQLI 519
           A+  F  M++    PDA +   LI GF  Q+KLD  Y+LL E+  K H  P   TY  LI
Sbjct: 391 AIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQEKGH-PPDGKTYNALI 450

Query: 520 EKLLEVRKLEEAITLLRLMKKQNYPPFSEPFVLYISKFGTVED----AADFLKVLSSKEY 579
           + +   +  E    +   M +    P    F + +  +    +     A + +++     
Sbjct: 451 KLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGIC 510

Query: 580 PSVSAYLHVFNSFFNEGRCSEA 597
           P  ++Y  +     +EG+  EA
Sbjct: 511 PDDNSYTVLIRGLISEGKSREA 526

The following BLAST results are available for this feature:

BLAST of MS024270.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135299.1	0.0e+00	99.69	pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Momordica ...	[more]
XP_022933685.1	0.0e+00	87.66	pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Cucurbita ...	[more]
XP_023530746.1	0.0e+00	87.09	pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Cucurbita ...	[more]
KAG6587441.1	0.0e+00	87.52	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]
KAG7021423.1	0.0e+00	87.11	Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a...	[more]

BLAST of MS024270.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STK5	1.7e-207	58.27	Pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Arabidop...	[more]
Q9M891	7.8e-83	31.34	Pentatricopeptide repeat-containing protein At3g02490, mitochondrial OS=Arabidop...	[more]
Q8LPF1	3.3e-81	31.02	Pentatricopeptide repeat-containing protein At5g15980, mitochondrial OS=Arabidop...	[more]
Q9LZP3	7.6e-30	24.61	Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidop...	[more]
Q9LEQ7	1.1e-28	24.08	Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidop...	[more]

BLAST of MS024270.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C114	0.0e+00	99.69	pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Momordic...	[more]
A0A6J1F5I7	0.0e+00	87.66	pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Cucurbit...	[more]
A0A6J1I0W9	0.0e+00	86.60	pentatricopeptide repeat-containing protein At3g48250, chloroplastic OS=Cucurbit...	[more]
A0A0A0LNT7	0.0e+00	84.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G003530 PE=4 SV=1	[more]
A0A5A7UW70	9.2e-305	83.60	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of MS024270.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48250.1	1.2e-208	58.27	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G02490.1	5.5e-84	31.34	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G15980.1	2.3e-82	31.02	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G62470.1	5.4e-31	24.61	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G14820.1	7.8e-30	24.08	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 513..541 e-value: 0.81 score: 10.1 coord: 264..293 e-value: 1.1 score: 9.7
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 438..475 e-value: 1.8E-8 score: 34.4
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 400..432 e-value: 2.3E-12 score: 46.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 442..475 e-value: 8.7E-8 score: 29.9 coord: 406..440 e-value: 1.0E-9 score: 36.0 coord: 264..297 e-value: 1.6E-4 score: 19.6 coord: 378..404 e-value: 0.0011 score: 17.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 404..438 score: 12.989198
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 439..473 score: 11.158661
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 510..544 score: 8.571795
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 369..403 score: 9.361008
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 262..296 score: 8.70333
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 358..506 e-value: 2.6E-33 score: 117.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 225..356 e-value: 1.9E-14 score: 55.4 coord: 68..222 e-value: 2.0E-9 score: 39.0
None	No IPR available	PANTHER	PTHR47003:SF2	OS01G0970900 PROTEIN	coord: 1..620
IPR044578	Pentatricopeptide repeat-containing protein BIR6-like	PANTHER	PTHR47003	OS01G0970900 PROTEIN	coord: 1..620

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS024270	MS024270	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS024270.1-cds	MS024270.1-cds-scaffold30:658280..660199	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS024270.1	MS024270.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008380	RNA splicing
molecular_function	GO:0005515	protein binding