MS023926.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS023926.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold251: 342504 .. 343492 (-)
Sequence length	246
RNA-Seq Expression	MS023926.1
Synteny	MS023926.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGATGACAGAAAGGATAAGGCCGGCGGCAATGACGATGGGCAAAGACGGCGAAGTGAGCTCCAAAGGCGGGCGGTGATGGGAGCTGCGAAGGATGATAGCGATGAAGCTCGAGTGAGGGAAGAAAATGGAAGAGAGAAATTTGAGAGATATAAGAAAATGAAGGAAAGAAGCTTGAGAGAGGGAAGAAAATAGAGGAGAGAAGACTTGAGAGAGGGAAGAAAATGGAGGAGAGAGACTTGAGAGAAAGGAGGGAAAATGAGATTGAAAAGATGAAAAAAAACTCTAACCTAAAATGAATGGCTAGGATTAAAAATAATGGAGGGTTGAGATTAAAGATAAAAAAAACATTATATATTAAAAAAGATATTTATTATATTATTTATAATTAAAAAAACATATATAATATGCATAAATTCGGGTTGGGTTGGGTTGACTCGAATTTTTAAAGGTTGAATCCGAGACCCAACCAACCCAGTCGAGTTGGGAAAATTTCAACCCAACCCAACCCAAACCTTCATCTAACCCAACCCAACCCGGGGTTGGGTTGGGTTCATCGGGTTGTCGGGCTTTTTTAACACCCTTAGTGGCCTGTCATGAAAAACACTATGTGAAATGCTTGAAAGCTGGACAATAATGCTTTTGAAGTTGAAAATATTGGCTGAAACATTTTTTAATTTACTTTTGCCCATTGTTCTAAATAGGAACAGGATCTACCAAGCGGGGCCTTAGACCTTTGACAAGGTCGTGGTAGTGATCATTAAGACACCATCAATGATTCGTCATTCAGAACTGAATTTCACAAAATTGTTTATCTGGGTTCGATTTTTCGACCTTCTACTGGCATGTATGACAAGACAATGGCGACTCGGCTTGGCAATGCATTGGGCGATTTCGAAGAGGCTGACTGTGATGACTCAAATCTTTGTTGCGATTCAAGTTTGCAAGTTCGAGTTGTGCTTGATATTTCTAAACCACTTCGATGA

mRNA sequence

ATGCAGGATGACAGAAAGGATAAGGCCGGCGGCAATGACGATGGGCAAAGACGGCGAAGTGAGCTCCAAAGGCGGGCGGTGATGGGAGCTGCGAAGGATGATAGCGATGAAGCTCGAACAATGGCGACTCGGCTTGGCAATGCATTGGGCGATTTCGAAGAGGCTGACTGTGATGACTCAAATCTTTGTTGCGATTCAAGTTTGCAAGTTCGAGTTGTGCTTGATATTTCTAAACCACTTCGATGA

Coding sequence (CDS)

ATGCAGGATGACAGAAAGGATAAGGCCGGCGGCAATGACGATGGGCAAAGACGGCGAAGTGAGCTCCAAAGGCGGGCGGTGATGGGAGCTGCGAAGGATGATAGCGATGAAGCTCGAACAATGGCGACTCGGCTTGGCAATGCATTGGGCGATTTCGAAGAGGCTGACTGTGATGACTCAAATCTTTGTTGCGATTCAAGTTTGCAAGTTCGAGTTGTGCTTGATATTTCTAAACCACTTCGATGA

Protein sequence

MQDDRKDKAGGNDDGQRRRSELQRRAVMGAAKDDSDEARTMATRLGNALGDFEEADCDDSNLCCDSSLQVRVVLDISKPLR

Homology

[Close]

BLAST of MS023926.1 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 39  RTMATRLGNALGDFEEADCDDSNLCCDSSLQVRVVLDISKPLR 82
           R MA RLGNALG FEEADCDD N    S+L+VRV+LDISKPLR
Sbjct: 143 RDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLR 185

[Close]

BLAST of MS023926.1 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 7.7e-07
Identity = 32/43 (74.42%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 39  RTMATRLGNALGDFEEADCDDSNLCCDSSLQVRVVLDISKPLR 82
           R MA RLGNALG FEEADCDD N    S+L+VRV+LDISKPLR
Sbjct: 143 RDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDISKPLR 185

[Close]

BLAST of MS023926.1 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 6.1e-04
Identity = 22/43 (51.16%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 39  RTMATRLGNALGDFEEADCDDSNLCCDSSLQVRVVLDISKPLR 82
           +TMA RLGNA+G+F + DC++      +SL++RV++DI+KPLR
Sbjct: 142 KTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDITKPLR 184

The following BLAST results are available for this feature:

BLAST of MS023926.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158377.1	1.6e-06	74.42	uncharacterized protein LOC111024874 [Momordica charantia]	[more]

BLAST of MS023926.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS023926.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DX30	7.7e-07	74.42	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DU55	6.1e-04	51.16	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]

BLAST of MS023926.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS023926	MS023926	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS023926.1-cds	MS023926.1-cds-scaffold251:342504..342632	CDS
MS023926.1-cds	MS023926.1-cds-scaffold251:343376..343492	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS023926.1	MS023926.1-protein	polypeptide