MS023615.1 (mRNA) Bitter gourd (TR) v1

Overview
NameMS023615.1
TypemRNA
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionRNA-directed DNA polymerase (reverse transcriptase)-related family protein
Locationscaffold155: 671132 .. 671254 (-)
Sequence length123
RNA-Seq ExpressionMS023615.1
SyntenyMS023615.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCTATCCCAAAGAGCTTGGTGGGCTGAATTTTAGGGATTTAGAGGGTTTTAATAAGGCGTTGTTGGTTAAGCAAGTTTGGAGATTATTGTGCAATCCGAACCTTCTTGTTGCAAAGGTTCTA

mRNA sequence

TGCTATCCCAAAGAGCTTGGTGGGCTGAATTTTAGGGATTTAGAGGGTTTTAATAAGGCGTTGTTGGTTAAGCAAGTTTGGAGATTATTGTGCAATCCGAACCTTCTTGTTGCAAAGGTTCTA

Coding sequence (CDS)

TGCTATCCCAAAGAGCTTGGTGGGCTGAATTTTAGGGATTTAGAGGGTTTTAATAAGGCGTTGTTGGTTAAGCAAGTTTGGAGATTATTGTGCAATCCGAACCTTCTTGTTGCAAAGGTTCTA

Protein sequence

CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL
Homology
BLAST of MS023615.1 vs. NCBI nr
Match: XP_022131662.1 (uncharacterized protein LOC111004787 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 6.0e-10
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 1   CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL 42
           C PKELGGLNFRDLEGFN+AL+ KQVWR+L NPN+LV++VL
Sbjct: 70  CLPKELGGLNFRDLEGFNQALVAKQVWRVLQNPNILVSRVL 110

BLAST of MS023615.1 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 0

Query: 1   CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL 42
           CYPKE GGLNFRDLEGFN+AL+ K VWR L +PNLLV+KVL
Sbjct: 938 CYPKECGGLNFRDLEGFNQALVAKHVWRFLQHPNLLVSKVL 978

BLAST of MS023615.1 vs. NCBI nr
Match: XP_013645843.2 (uncharacterized protein LOC106350515 [Brassica napus])

HSP 1 Score: 64.3 bits (155), Expect = 2.8e-07
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 0

Query: 1   CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL 42
           C PK+ GGL FRDLE FN+ALL KQVWR+L NPN+L+A++L
Sbjct: 650 CIPKKEGGLGFRDLESFNQALLGKQVWRILQNPNILMARIL 690

BLAST of MS023615.1 vs. NCBI nr
Match: XP_009124577.2 (uncharacterized protein LOC103849567 [Brassica rapa])

HSP 1 Score: 64.3 bits (155), Expect = 2.8e-07
Identity = 28/41 (68.29%), Postives = 35/41 (85.37%), Query Frame = 0

Query: 1   CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL 42
           C PK+ GGL FRDLE FN+ALL KQVWR+L NPN+L+A++L
Sbjct: 650 CIPKKEGGLGFRDLESFNQALLGKQVWRILQNPNILMARIL 690

BLAST of MS023615.1 vs. NCBI nr
Match: XP_022545183.1 (uncharacterized protein LOC111199409 [Brassica napus])

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 28/41 (68.29%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 1   CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL 42
           C PK  GGL FRDLE FN+ALL KQVWR++ NPN L+A+VL
Sbjct: 849 CIPKREGGLGFRDLESFNQALLGKQVWRIMQNPNCLMARVL 889

BLAST of MS023615.1 vs. ExPASy TrEMBL
Match: A0A6J1BRN0 (uncharacterized protein LOC111004787 OS=Momordica charantia OX=3673 GN=LOC111004787 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.9e-10
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 0

Query: 1   CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL 42
           C PKELGGLNFRDLEGFN+AL+ KQVWR+L NPN+LV++VL
Sbjct: 70  CLPKELGGLNFRDLEGFNQALVAKQVWRVLQNPNILVSRVL 110

BLAST of MS023615.1 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-10
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 0

Query: 1   CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL 42
           CYPKE GGLNFRDLEGFN+AL+ K VWR L +PNLLV+KVL
Sbjct: 938 CYPKECGGLNFRDLEGFNQALVAKHVWRFLQHPNLLVSKVL 978

BLAST of MS023615.1 vs. ExPASy TrEMBL
Match: A0A5A7Q0C0 (RNA-directed DNA polymerase (Reversetranscriptase)-related family protein OS=Striga asiatica OX=4170 GN=STAS_14832 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.7e-07
Identity = 27/39 (69.23%), Postives = 34/39 (87.18%), Query Frame = 0

Query: 3  PKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL 42
          PKE+GGL F+DL+ FNKAL+ KQ+WRLL  PNLLV++VL
Sbjct: 48 PKEIGGLGFKDLQTFNKALIFKQLWRLLSQPNLLVSRVL 86

BLAST of MS023615.1 vs. ExPASy TrEMBL
Match: A0A6J0LKS2 (uncharacterized protein LOC108831512 OS=Raphanus sativus OX=3726 GN=LOC108831512 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 8.7e-07
Identity = 25/41 (60.98%), Postives = 33/41 (80.49%), Query Frame = 0

Query: 1   CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL 42
           C PK+LGGL F+DLE FN+A+L KQ W++L NPN L+ +VL
Sbjct: 606 CLPKKLGGLGFKDLESFNQAMLAKQAWKILQNPNSLITRVL 646

BLAST of MS023615.1 vs. ExPASy TrEMBL
Match: A0A5B6VJW9 (Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_015189 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 28/41 (68.29%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 1   CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL 42
           CYPK  GGL FRDL  FNKALL KQ WRL   P+ L+AKVL
Sbjct: 259 CYPKITGGLGFRDLSFFNKALLAKQAWRLFAQPDCLLAKVL 299

BLAST of MS023615.1 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 3.9e-07
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 0

Query: 1  CYPKELGGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKV 41
          CY  E GG+ F+D+E FN ALL KQ+WR+L  P  L+AKV
Sbjct: 49 CYKAE-GGIGFKDIEAFNLALLGKQMWRMLSRPESLMAKV 87

BLAST of MS023615.1 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 40.4 bits (93), Expect = 4.0e-04
Identity = 18/35 (51.43%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 7  GGLNFRDLEGFNKALLVKQVWRLLCNPNLLVAKVL 42
          GGL FRDL  FN+ALL KQ +R++  P+ L++++L
Sbjct: 55 GGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLL 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022131662.16.0e-1078.05uncharacterized protein LOC111004787 [Momordica charantia][more]
XP_022158377.11.3e-0978.05uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_013645843.22.8e-0768.29uncharacterized protein LOC106350515 [Brassica napus][more]
XP_009124577.22.8e-0768.29uncharacterized protein LOC103849567 [Brassica rapa][more]
XP_022545183.11.1e-0668.29uncharacterized protein LOC111199409 [Brassica napus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1BRN02.9e-1078.05uncharacterized protein LOC111004787 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
A0A6J1DX306.5e-1078.05uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A5A7Q0C06.7e-0769.23RNA-directed DNA polymerase (Reversetranscriptase)-related family protein OS=Str... [more]
A0A6J0LKS28.7e-0760.98uncharacterized protein LOC108831512 OS=Raphanus sativus OX=3726 GN=LOC108831512... [more]
A0A5B6VJW91.1e-0668.29Reverse transcriptase OS=Gossypium australe OX=47621 GN=EPI10_015189 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G29090.13.9e-0757.50Ribonuclease H-like superfamily protein [more]
ATMG00310.14.0e-0451.43RNA-directed DNA polymerase (reverse transcriptase)-related family protein [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MS023615MS023615gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MS023615.1-cdsMS023615.1-cds-scaffold155:671132..671254CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MS023615.1MS023615.1-proteinpolypeptide