MS022953.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS022953.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	serine/arginine-rich SC35-like splicing factor SCL33
Location	scaffold357: 67443 .. 70981 (+)
Sequence length	633
RNA-Seq Expression	MS022953.1
Synteny	MS022953.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGTAGAAGTTACAGCTATAGTCCCTCCCCACCAAGGAGTTATGGTAGGAGACATCGTAGCCCTAGTCCACGGGATCGAGGAGGCCGTGGAAGGGATCTACCGACAAGCCTTTTGGTTCGGAACCTACGACATGACTGCAGGTTTGAAACTGCATTTTTCATTTTCTTTTCACTTAAGGGTTCAGATGCTAGGATTCTCTTTCTTTATATATGTATGTATGTATGGGTCTTTTAATCTTTCTAATGCAAGAGTTTCTTCCATTCACAATCTATTTCCCAGTTTTTTTCTTCCTTTGGTTTCAATTTCTTTATGATCCAATAAATCTCATTATGTAGAATTATGTGATGGTTTATGGATGTTTATCTTTTCATATTTGTTGATAAGAAGCTATTGTATCAAAGAAAGTTCAAACGCAAAAGGAGGAAGATAAGAAATCTACTATGCAGCCAAAGAGCTTACTAAAATGCACCTCAATTGGCTAGAATCAAAAAATAACTACTATTATCACTTTTTTTTAATATCCGTGAGTGTCCGCATCTCAACTAATCTCACGGGACAACTGCTTGACTCTACTACATTAGGATGCCAAGGAAACTTTTAAAGCTATTATCACAAAAATTATTTGGATGATAAATACGAACTAGAAGTTAGAAATCTAATGAGATGCCAATAATAAGTATATATTTAAATTTTAAATTTGATTTCTCATTGAATATTTCAATTAAAACTGCAACGTACATCCAAATCTTGGCACTTATTTTTTTTTTAATATTCCAGGGGTCTTTCACGTGTCAAGGTCTTTTATCCATACTATTATGTGTTGGTTGCTGCTACATTTCTCATCACATTTTTATTTTTACGTGCATGCTAAGGAGAGCACTAGGCCATGCTGTATGATGTACTTCAATATATGTATTAGTTGAAGTATGAATAAAGGATTAAAGGGTTCTTTTACAAATATTTGTTCTCAGGTTGATACTTTTCTCAGCTTGATGTCTAGTTTTTTTTCCTATTAGAAGCAATAGAGATTTAAATTGAAGTGTTTAGGTAGTTTTCCATGTTGGATTTTCCCACCCTTTCTTTGGAAATTTGAAGATCCTCGTTTGTTATTTTCTTTGAAATGTATTTTATATGATGTCTCATTGCTTGGTTGAGAATGTATTTTCTTTCTCAAAATGCGAAAACTTGTTAAGAAAAAGGACAAAAACTAAGTCATACAAGAACAGCCAAAAAATACTCCAAGTAACTACGCTAGGCTGTAGGGAGCTTCAATTGTTGAGAACAAAAAGGACAAACGAAAAATGTGTTTGCTTTTGTTCTGTATTGAGTCGATTAACTTCTTCAGTCGATTAACTTCTTCATACTTGCGTGTTTTGCAGGCCAGAGGACCTACGTGGGTTATTTGGGCGGTTTGGTCCTCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGGTAGGCATGGTGCATGGCTTTACGAGATTGTTCTTTACTTTGTATGCATCTGATGTGTATGCGTCATGATACCTTTTCTGGGTAGTTATGTTTAACACAATTTAGTCCCGTTTTGTACGCATCTGGTCTTTATGCTTATGAATATACTTTCTGAATTTTTGTTTTTAATTTCCTTTTTTCAAAGGAAACAATTTTATTGTTTAATATAAGCTCTATCCAATGAAGTTACAAAAAGTTTCTCCAATTGGATAAAGAGTGTACCAATAGAAGAGTGCTCAAGCTATAATGGCTGAAAGGAGCCACATTTTACACCAAGTAGTAGCCAAAAAATAAAATATTGAACCAATAAAGAGTTGTTATGGGGAGTGTTCTTTTTCCTCAAAAAGCCTTGAATTTCACTCTCCAGATGGCCCTTATGGAAGCTCTCAAGAAGTGTTGTGGGGAGTGTTCTTGTTCCTTAATATATTGTCTGGATAGTTACTTCTCTGGATTGCTTAATGGTTTGGAATTGGTCCTCTGTTTTCAATTATTTGGTTTTCGGATAACATACAATCTGTTTATGGAGTTTGGTTGTTTTATTGAAAGTGTTGAAGACAACCAATGAAGTAATAAGAGTATCTTGTGGAAGACATTCAAGTAAGTTCTGATGACTTAATGTGTACATGAAGATTCAGTGGAAGTTGGGTTTGAATTCATTGAGAAGAAGTTCAAGTCTTGAAGAATTTCATCTCACTTTTTTCTTTGCCACTCAGAAGGTTAGCATGGTGATGTTCATATTCTCTTGTTTGAGTTCTCGGTAGACGTTTCTATCATTTCCAATTAATCTCTGGATTGATTGTTGATTGCAATGACGCCACTGGTCAAATTGACATTTATTGAAATTTTCCAAGTGGGTTAGTTAACATACATTGTCAAAATTTGTATTTATGAATGTTATGATTGTGGTGCAGAGAGCCACGTGGCTTTGGATTTGTTCAGTTTGTTGATCCTGCTGATGCCGCTGATGCCAAGTATGAACTGGATGGCCAAGTTCTCCTGGGTCGTGAATTAACTGTTGTATTTGCTGAGGAGAATAGGAAGAGACCTGAAGAGATGAGAGCAAGAGACTCATCCAGGTTGTCATCTCTTTCTTTAAACTGATTTCTGGTTGCCTATTTCTATTGCTTTGCTAAGCTAGGATGCGTGATGAAAAATTGAACTCTCAACTTATATAAATTCCCTAGAGGCATCCTCAAAAATTTCATATGCCTCTTAAGTTTCTTTTTAGGCTGAGGCACAGCCAGCATTGGTCCTGAGATCTTTCTTCTCCTTGGATTTTCTTGAGTTTCCAATTTTGTAGAAAAAATGAGATCGAGGGTTGATCCCTTTTGTGAGATATGAATTCAAGGACTCGAGTAAATTGACTTCACCATTCGATAACCACCATCTTTTGTCTTGTTAAGGAAAAGGAAAGTCTGTATGTTTGTTTTCAAAGACTACTGATCCACCGTTGCAGTCTCTGTTCTTTTTTTATCAATCTATTGTCCATTTTTTAAAATATCAATACTCATGTTTGTATTATTTGTTTGTGAAATTGTTACCAGGGGTCGGTCCTACAACTACAGGCGCTCTCCACTGCGATATTCTCGATCTCCACACTATGATCGAAAATATTCACATAGCCCAGAGTACTATTCCCCTGCTCAGTCTGGCCGATATTCACGGTGCGCAGTTATATGTATTCTTTTTCCATTATTAGATTTTATCCAAACAATTTTCGTAGCATATGATTTTCATCAAATTAATTAAGAAAAGAGAGTGCTAGTTAAGGTCTGTATCTCGGCCAGAAGGTCTGCAGTTTGAATCCCTGCCCCACATTTTGGACTAAATAATACCTTGACCTAAATAATAATAGAGCGCACGGTGGTTTATTCTGCGCACGGTGATTTATTCTAACCTCATTTGTGTTATGTTAGGTCAATCTCACCAAGAGACCGAAGGTACAGGGAGCGGTCCTACTCGAGGTCACCTTATGATTCAAGGGGCCGCAGTTATAGCCGAAGCAGGAGCCGGAGCTATAGCCGAAGTTATTCTAGG

mRNA sequence

ATGAGAGGTAGAAGTTACAGCTATAGTCCCTCCCCACCAAGGAGTTATGGTAGGAGACATCGTAGCCCTAGTCCACGGGATCGAGGAGGCCGTGGAAGGGATCTACCGACAAGCCTTTTGGTTCGGAACCTACGACATGACTGCAGGCCAGAGGACCTACGTGGGTTATTTGGGCGGTTTGGTCCTCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGAGAGCCACGTGGCTTTGGATTTGTTCAGTTTGTTGATCCTGCTGATGCCGCTGATGCCAAGTATGAACTGGATGGCCAAGTTCTCCTGGGTCGTGAATTAACTGTTGTATTTGCTGAGGAGAATAGGAAGAGACCTGAAGAGATGAGAGCAAGAGACTCATCCAGGTTGGGTCGGTCCTACAACTACAGGCGCTCTCCACTGCGATATTCTCGATCTCCACACTATGATCGAAAATATTCACATAGCCCAGAGTACTATTCCCCTGCTCAGTCTGGCCGATATTCACGGTCAATCTCACCAAGAGACCGAAGGTACAGGGAGCGGTCCTACTCGAGGTCACCTTATGATTCAAGGGGCCGCAGTTATAGCCGAAGCAGGAGCCGGAGCTATAGCCGAAGTTATTCTAGG

Coding sequence (CDS)

ATGAGAGGTAGAAGTTACAGCTATAGTCCCTCCCCACCAAGGAGTTATGGTAGGAGACATCGTAGCCCTAGTCCACGGGATCGAGGAGGCCGTGGAAGGGATCTACCGACAAGCCTTTTGGTTCGGAACCTACGACATGACTGCAGGCCAGAGGACCTACGTGGGTTATTTGGGCGGTTTGGTCCTCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGAGAGCCACGTGGCTTTGGATTTGTTCAGTTTGTTGATCCTGCTGATGCCGCTGATGCCAAGTATGAACTGGATGGCCAAGTTCTCCTGGGTCGTGAATTAACTGTTGTATTTGCTGAGGAGAATAGGAAGAGACCTGAAGAGATGAGAGCAAGAGACTCATCCAGGTTGGGTCGGTCCTACAACTACAGGCGCTCTCCACTGCGATATTCTCGATCTCCACACTATGATCGAAAATATTCACATAGCCCAGAGTACTATTCCCCTGCTCAGTCTGGCCGATATTCACGGTCAATCTCACCAAGAGACCGAAGGTACAGGGAGCGGTCCTACTCGAGGTCACCTTATGATTCAAGGGGCCGCAGTTATAGCCGAAGCAGGAGCCGGAGCTATAGCCGAAGTTATTCTAGG

Protein sequence

MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTVVFAEENRKRPEEMRARDSSRLGRSYNYRRSPLRYSRSPHYDRKYSHSPEYYSPAQSGRYSRSISPRDRRYRERSYSRSPYDSRGRSYSRSRSRSYSRSYSR

Homology

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BLAST of MS022953.1 vs. NCBI nr
Match: XP_022151394.1 (serine/arginine-rich SC35-like splicing factor SCL33 [Momordica charantia])

HSP 1 Score: 398.3 bits (1022), Expect = 4.2e-107
Identity = 206/211 (97.63%), Postives = 206/211 (97.63%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGEPRGFGFVQFVDPADA DAKYELDGQVLLGRELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADATDAKYELDGQVLLGRELTVVFAEENRKRP 120

Query: 121 EEMRARDSSRLGRSYNYRRSPLRYSRSPHYDRKYSHSPEYYSPAQSGRYSRSISPRDRRY 180
           EEMRARDSSR GRSYNYRRSPLRYSRSPHYDRKYS SPEYYSPAQSGRYSRSISPRDRRY
Sbjct: 121 EEMRARDSSR-GRSYNYRRSPLRYSRSPHYDRKYSRSPEYYSPAQSGRYSRSISPRDRRY 180

Query: 181 RERSYSRSPYDSRGRSYSRSRSRSYSRSYSR 212
           RERSY RSPYDSRGRSYSRSRSRSYSRSY R
Sbjct: 181 RERSYLRSPYDSRGRSYSRSRSRSYSRSYCR 210

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BLAST of MS022953.1 vs. NCBI nr
Match: XP_008443002.1 (PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Cucumis melo])

HSP 1 Score: 363.2 bits (931), Expect = 1.5e-96
Identity = 195/213 (91.55%), Postives = 199/213 (93.43%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRR+RSPSPR RGGR RDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRSRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGEPRGFGFVQFVD ADAADAKYELDGQVLLG ELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120

Query: 121 EEMRARDSSRLGRSYNY--RRSPLRYSRSPHYDRKYSHSPEYYSPAQSGRYSRSISPRDR 180
           EEMRARDSSR GRSY+Y  R SPLRYSRSPHYDRKYS SPEYYSPA+S RYSR  SPR R
Sbjct: 121 EEMRARDSSR-GRSYSYSRRHSPLRYSRSPHYDRKYSRSPEYYSPARSRRYSR--SPRGR 180

Query: 181 RYRERSYSRSPYDSRGRSYSRSRSRSYSRSYSR 212
           RYRE+SYSRSPYD RGRSYSRSRSRSYSRSYSR
Sbjct: 181 RYREQSYSRSPYDPRGRSYSRSRSRSYSRSYSR 210

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BLAST of MS022953.1 vs. NCBI nr
Match: KAG6596659.1 (Serine/arginine-rich SC35-like splicing factor SCL30A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 361.7 bits (927), Expect = 4.3e-96
Identity = 189/211 (89.57%), Postives = 200/211 (94.79%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRR+RS SPR  GGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 48  MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 107

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSG+PRGFGFVQ++DP+DAADAKYELDGQVLLGRELTVVFAEENRKRP
Sbjct: 108 GPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENRKRP 167

Query: 121 EEMRARDSSRLGRSYNYRRSPLRYSRSPHYDRKYSHSPEYYSPAQSGRYSRSISPRDRRY 180
           E+MRARDSSR GRSY+YRRSPL+YS+SP + RKYS SPEYYSPA+S RYSRSISPRDRRY
Sbjct: 168 EQMRARDSSR-GRSYSYRRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDRRY 227

Query: 181 RERSYSRSPYDSRGRSYSRSRSRSYSRSYSR 212
           RERSYSRSPYDSR R YSRSRSRS SRSYSR
Sbjct: 228 RERSYSRSPYDSRDRGYSRSRSRSRSRSYSR 257

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BLAST of MS022953.1 vs. NCBI nr
Match: XP_022948463.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita moschata])

HSP 1 Score: 360.1 bits (923), Expect = 1.3e-95
Identity = 190/213 (89.20%), Postives = 201/213 (94.37%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRR+RS SPR  GGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 5   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 64

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSG+PRGFGFVQ++DP+DAADAKYELDGQVLLGRELTVVFAEENRKRP
Sbjct: 65  GPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENRKRP 124

Query: 121 EEMRARDSSRLGRSYNYRRSPLRYSRSPHYDRKYSHSPEYYSPAQSGRYSRSISPRDRRY 180
           E+MRARDSS  GRSY+YRRSPL+YS+SP + RKYS SPEYYSPA+SGRYSRSISPRDRRY
Sbjct: 125 EQMRARDSSS-GRSYSYRRSPLQYSQSPPHGRKYSPSPEYYSPARSGRYSRSISPRDRRY 184

Query: 181 RERSYSRSPYDSRGRSY--SRSRSRSYSRSYSR 212
           RERSYSRSPYDSR R Y  SRSRSRSYSRSYSR
Sbjct: 185 RERSYSRSPYDSRDRGYSRSRSRSRSYSRSYSR 216

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BLAST of MS022953.1 vs. NCBI nr
Match: XP_022948454.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucurbita moschata])

HSP 1 Score: 360.1 bits (923), Expect = 1.3e-95
Identity = 190/213 (89.20%), Postives = 201/213 (94.37%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRR+RS SPR  GGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 11  MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 70

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSG+PRGFGFVQ++DP+DAADAKYELDGQVLLGRELTVVFAEENRKRP
Sbjct: 71  GPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENRKRP 130

Query: 121 EEMRARDSSRLGRSYNYRRSPLRYSRSPHYDRKYSHSPEYYSPAQSGRYSRSISPRDRRY 180
           E+MRARDSS  GRSY+YRRSPL+YS+SP + RKYS SPEYYSPA+SGRYSRSISPRDRRY
Sbjct: 131 EQMRARDSSS-GRSYSYRRSPLQYSQSPPHGRKYSPSPEYYSPARSGRYSRSISPRDRRY 190

Query: 181 RERSYSRSPYDSRGRSY--SRSRSRSYSRSYSR 212
           RERSYSRSPYDSR R Y  SRSRSRSYSRSYSR
Sbjct: 191 RERSYSRSPYDSRDRGYSRSRSRSRSYSRSYSR 222

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BLAST of MS022953.1 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.7e-61
Identity = 145/220 (65.91%), Postives = 164/220 (74.55%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDR--GGRGRDLPTSLLVRNLRHDCRPEDLRGLFG 60
           MRGR  SY+PSPPR YGRR RSPSPR R  G R  DLPTSLLVRNLRHDCR EDLR  F 
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFE 60

Query: 61  RFGPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTVVFAEENRK 120
           +FGP+KDIYLPRDYY+G+PRGFGF+QF+DPADAA+AK+++DG +LLGRELTVVFAEENRK
Sbjct: 61  QFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRK 120

Query: 121 RPEEMRARD-SSRLGRSYNYRRSPLRYSRSP---HYDRKYSHSPEYYSPAQSGRYSRSIS 180
           +P EMR RD   R  R  + RRSP RYSRSP      R  S S  Y SP      SRS+S
Sbjct: 121 KPTEMRTRDRGGRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVS 180

Query: 181 PRDRRY-RERSYSRSP--YDSRGRSYSRSRSRSYSRSYSR 212
           P+DRRY +ERSYSRSP    SR RS S  R +S+SRS  R
Sbjct: 181 PQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHSRSPRR 218

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BLAST of MS022953.1 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 6.1e-61
Identity = 148/222 (66.67%), Postives = 166/222 (74.77%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDR-GGRGRDLPTSLLVRNLRHDCRPEDLRGLFGR 60
           MRGR  SY+PSPPR YGRR RSPSPR R GGR RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTVVFAEENRKR 120
           FGP+KDIYLPRDYY+G+PRGFGFVQF+DPADAADAK+ +DG +LLGRELTVVFAEENRK+
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 121 PEEMRARDSSRLGRSYNYRRSPLRY---SRS--PHYDRKYSHSPEYYSPAQSGRYSRSIS 180
           P EMRAR+    GR  + RR+P RY   SRS  P   R  S S +YYSP     + RSIS
Sbjct: 121 PTEMRARERGG-GRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSIS 180

Query: 181 PRDRRY-RERSYSRSPYD--SRGRSYS--RSRSRSYSRSYSR 212
           PR+ RY   RSYSRSP    SRGRS +  R +SRS S S  R
Sbjct: 181 PREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRR 219

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BLAST of MS022953.1 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-31
Identity = 106/236 (44.92%), Postives = 131/236 (55.51%), Query Frame = 0


Query: 2   RGRSYSYSP-----SPPRSY-----GRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPE 61
           R RS SYSP     SPPR        R    PS RD    G   P+ LL+RNL  D RP 
Sbjct: 5   RSRSRSYSPRPRDRSPPRERKGYDDNRLRERPSSRDHESSG---PSGLLIRNLPLDARPN 64

Query: 62  DLRGLFGRFGPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTVV 121
           DLR  F RFGPLKDIYLPR+YY+GEPRGFGFV++    DAA+A   ++ +V+ GRE+ +V
Sbjct: 65  DLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIV 124

Query: 122 FAEENRKRPEEMRARDSSRLGRSYNYRRSPLRYSRSPHYDRKYSHSP------------- 181
           FAEENRK P+EMR  + +  GR  +Y+R+  R  R  +     S SP             
Sbjct: 125 FAEENRKTPQEMRTTNGTS-GRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRHSKVRED 184

Query: 182 EYYSPAQSGR-YSRSISPRDRRYRERSYSRSPYDS------RGRSYSRSRSRSYSR 208
           + YSP +  R  SRS  PR+ R  +    RSP +       R R  SRSRSRS SR
Sbjct: 185 DLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTPIRSRCLSRSRSRSLSR 236

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BLAST of MS022953.1 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 4.3e-30
Identity = 96/223 (43.05%), Postives = 114/223 (51.12%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRHRSPSP----------RDRGGRGRDLPTSLLVRNLRHDCRP 60
           MR  S  Y   P R YG R RSP P             GGR      SLLVRN+  DCRP
Sbjct: 1   MRRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRP 60

Query: 61  EDLRGLFGRFGPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTV 120
           E+LR  F RFGP++D+Y+PRDYYSG+PRGF FV+FVD  DA +A+  ++ +   GRE+TV
Sbjct: 61  EELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITV 120

Query: 121 VFAEENRKRPEEMRARDSSRLGRSYNYRRSPLRYSRSPHYDRKYSHSPEYYSPAQSGRYS 180
           V A E+RKRPEEMR +  +R              SR P   R  SH           R  
Sbjct: 121 VVASESRKRPEEMRVKTRTR--------------SREPSGSRDRSHGRSRSRSISRSRSP 180

Query: 181 RSISPRDRRYRERSYSRSPY----DSRGRSYSRSRSRSYSRSY 210
           R  S    RYR RSYS +P       RG        RSYS  Y
Sbjct: 181 RRPSDSRSRYRSRSYSPAPRRRGGPPRGEEDENYSRRSYSPGY 209

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BLAST of MS022953.1 vs. ExPASy Swiss-Prot
Match: O75494 (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 4.9e-26
Identity = 82/189 (43.39%), Postives = 113/189 (59.79%), Query Frame = 0


Query: 37  TSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKY 96
           TSL VRN+  D R EDLR  FGR+GP+ D+Y+P D+Y+  PRGF +VQF D  DA DA +
Sbjct: 10  TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69

Query: 97  ELDGQVLLGRELTVVFAEENRKRPEEMRARD------SSRLGRSYNYRRSPLR------- 156
            LD + + GR++ + FA+ +RK P +M+A++      SSR      YRRS  R       
Sbjct: 70  NLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRS 129

Query: 157 YSRSPHYDRKYSHSPEYYSPAQSGRYSRSISPRDR-RYRERSYSRSPYDSRGRSYSRSRS 212
            SRS  Y+ + S+SP    P    R SRS S  DR ++R RS+SRS  +SR RS S+ + 
Sbjct: 130 RSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSRSRSKSQPKK 189

[Close]

BLAST of MS022953.1 vs. ExPASy TrEMBL
Match: A0A6J1DCY5 (serine/arginine-rich SC35-like splicing factor SCL33 OS=Momordica charantia OX=3673 GN=LOC111019338 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.0e-107
Identity = 206/211 (97.63%), Postives = 206/211 (97.63%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGEPRGFGFVQFVDPADA DAKYELDGQVLLGRELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADATDAKYELDGQVLLGRELTVVFAEENRKRP 120

Query: 121 EEMRARDSSRLGRSYNYRRSPLRYSRSPHYDRKYSHSPEYYSPAQSGRYSRSISPRDRRY 180
           EEMRARDSSR GRSYNYRRSPLRYSRSPHYDRKYS SPEYYSPAQSGRYSRSISPRDRRY
Sbjct: 121 EEMRARDSSR-GRSYNYRRSPLRYSRSPHYDRKYSRSPEYYSPAQSGRYSRSISPRDRRY 180

Query: 181 RERSYSRSPYDSRGRSYSRSRSRSYSRSYSR 212
           RERSY RSPYDSRGRSYSRSRSRSYSRSY R
Sbjct: 181 RERSYLRSPYDSRGRSYSRSRSRSYSRSYCR 210

[Close]

BLAST of MS022953.1 vs. ExPASy TrEMBL
Match: A0A1S3B7U0 (serine/arginine-rich SC35-like splicing factor SCL33 OS=Cucumis melo OX=3656 GN=LOC103486733 PE=4 SV=1)

HSP 1 Score: 363.2 bits (931), Expect = 7.2e-97
Identity = 195/213 (91.55%), Postives = 199/213 (93.43%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRR+RSPSPR RGGR RDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRSRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGEPRGFGFVQFVD ADAADAKYELDGQVLLG ELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120

Query: 121 EEMRARDSSRLGRSYNY--RRSPLRYSRSPHYDRKYSHSPEYYSPAQSGRYSRSISPRDR 180
           EEMRARDSSR GRSY+Y  R SPLRYSRSPHYDRKYS SPEYYSPA+S RYSR  SPR R
Sbjct: 121 EEMRARDSSR-GRSYSYSRRHSPLRYSRSPHYDRKYSRSPEYYSPARSRRYSR--SPRGR 180

Query: 181 RYRERSYSRSPYDSRGRSYSRSRSRSYSRSYSR 212
           RYRE+SYSRSPYD RGRSYSRSRSRSYSRSYSR
Sbjct: 181 RYREQSYSRSPYDPRGRSYSRSRSRSYSRSYSR 210

[Close]

BLAST of MS022953.1 vs. ExPASy TrEMBL
Match: A0A6J1G9Y1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111452132 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.1e-96
Identity = 190/213 (89.20%), Postives = 201/213 (94.37%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRR+RS SPR  GGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSG+PRGFGFVQ++DP+DAADAKYELDGQVLLGRELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENRKRP 120

Query: 121 EEMRARDSSRLGRSYNYRRSPLRYSRSPHYDRKYSHSPEYYSPAQSGRYSRSISPRDRRY 180
           E+MRARDSS  GRSY+YRRSPL+YS+SP + RKYS SPEYYSPA+SGRYSRSISPRDRRY
Sbjct: 121 EQMRARDSSS-GRSYSYRRSPLQYSQSPPHGRKYSPSPEYYSPARSGRYSRSISPRDRRY 180

Query: 181 RERSYSRSPYDSRGRSY--SRSRSRSYSRSYSR 212
           RERSYSRSPYDSR R Y  SRSRSRSYSRSYSR
Sbjct: 181 RERSYSRSPYDSRDRGYSRSRSRSRSYSRSYSR 212

[Close]

BLAST of MS022953.1 vs. ExPASy TrEMBL
Match: A0A6J1G9Y3 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452132 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.1e-96
Identity = 190/213 (89.20%), Postives = 201/213 (94.37%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRR+RS SPR  GGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 11  MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 70

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSG+PRGFGFVQ++DP+DAADAKYELDGQVLLGRELTVVFAEENRKRP
Sbjct: 71  GPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENRKRP 130

Query: 121 EEMRARDSSRLGRSYNYRRSPLRYSRSPHYDRKYSHSPEYYSPAQSGRYSRSISPRDRRY 180
           E+MRARDSS  GRSY+YRRSPL+YS+SP + RKYS SPEYYSPA+SGRYSRSISPRDRRY
Sbjct: 131 EQMRARDSSS-GRSYSYRRSPLQYSQSPPHGRKYSPSPEYYSPARSGRYSRSISPRDRRY 190

Query: 181 RERSYSRSPYDSRGRSY--SRSRSRSYSRSYSR 212
           RERSYSRSPYDSR R Y  SRSRSRSYSRSYSR
Sbjct: 191 RERSYSRSPYDSRDRGYSRSRSRSRSYSRSYSR 222

[Close]

BLAST of MS022953.1 vs. ExPASy TrEMBL
Match: A0A6J1G9D2 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452132 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 6.1e-96
Identity = 190/213 (89.20%), Postives = 201/213 (94.37%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRR+RS SPR  GGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 5   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 64

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSG+PRGFGFVQ++DP+DAADAKYELDGQVLLGRELTVVFAEENRKRP
Sbjct: 65  GPLKDIYLPRDYYSGKPRGFGFVQYIDPSDAADAKYELDGQVLLGRELTVVFAEENRKRP 124

Query: 121 EEMRARDSSRLGRSYNYRRSPLRYSRSPHYDRKYSHSPEYYSPAQSGRYSRSISPRDRRY 180
           E+MRARDSS  GRSY+YRRSPL+YS+SP + RKYS SPEYYSPA+SGRYSRSISPRDRRY
Sbjct: 125 EQMRARDSSS-GRSYSYRRSPLQYSQSPPHGRKYSPSPEYYSPARSGRYSRSISPRDRRY 184

Query: 181 RERSYSRSPYDSRGRSY--SRSRSRSYSRSYSR 212
           RERSYSRSPYDSR R Y  SRSRSRSYSRSYSR
Sbjct: 185 RERSYSRSPYDSRDRGYSRSRSRSRSYSRSYSR 216

[Close]

BLAST of MS022953.1 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 235.7 bits (600), Expect = 3.3e-62
Identity = 145/217 (66.82%), Postives = 163/217 (75.12%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDR-GGRGRDLPTSLLVRNLRHDCRPEDLRGLFGR 60
           MRGR  SY+PSPPR YGRR RSPSPR R GGR RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTVVFAEENRKR 120
           FGP+KDIYLPRDYY+G+PRGFGFVQF+DPADAADAK+ +DG +LLGRELTVVFAEENRK+
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 121 PEEMRARDSSRLGRSYNYRRSPLRY---SRS--PHYDRKYSHSPEYYSPAQSGRYSRSIS 180
           P EMRAR+    GR  + RR+P RY   SRS  P   R  S S +YYSP     + RSIS
Sbjct: 121 PTEMRARERGG-GRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSIS 180

Query: 181 PRDRRY-RERSYSRSPYD--SRGRSYSRSRSRSYSRS 209
           PR+ RY   RSYSRSP    SRGRS +  R +S S S
Sbjct: 181 PREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLS 214

[Close]

BLAST of MS022953.1 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 235.7 bits (600), Expect = 3.3e-62
Identity = 145/220 (65.91%), Postives = 164/220 (74.55%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDR--GGRGRDLPTSLLVRNLRHDCRPEDLRGLFG 60
           MRGR  SY+PSPPR YGRR RSPSPR R  G R  DLPTSLLVRNLRHDCR EDLR  F 
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFE 60

Query: 61  RFGPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTVVFAEENRK 120
           +FGP+KDIYLPRDYY+G+PRGFGF+QF+DPADAA+AK+++DG +LLGRELTVVFAEENRK
Sbjct: 61  QFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRK 120

Query: 121 RPEEMRARD-SSRLGRSYNYRRSPLRYSRSP---HYDRKYSHSPEYYSPAQSGRYSRSIS 180
           +P EMR RD   R  R  + RRSP RYSRSP      R  S S  Y SP      SRS+S
Sbjct: 121 KPTEMRTRDRGGRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVS 180

Query: 181 PRDRRY-RERSYSRSP--YDSRGRSYSRSRSRSYSRSYSR 212
           P+DRRY +ERSYSRSP    SR RS S  R +S+SRS  R
Sbjct: 181 PQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHSRSPRR 218

[Close]

BLAST of MS022953.1 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 235.3 bits (599), Expect = 4.4e-62
Identity = 148/222 (66.67%), Postives = 166/222 (74.77%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDR-GGRGRDLPTSLLVRNLRHDCRPEDLRGLFGR 60
           MRGR  SY+PSPPR YGRR RSPSPR R GGR RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTVVFAEENRKR 120
           FGP+KDIYLPRDYY+G+PRGFGFVQF+DPADAADAK+ +DG +LLGRELTVVFAEENRK+
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 121 PEEMRARDSSRLGRSYNYRRSPLRY---SRS--PHYDRKYSHSPEYYSPAQSGRYSRSIS 180
           P EMRAR+    GR  + RR+P RY   SRS  P   R  S S +YYSP     + RSIS
Sbjct: 121 PTEMRARERGG-GRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSIS 180

Query: 181 PRDRRY-RERSYSRSPYD--SRGRSYS--RSRSRSYSRSYSR 212
           PR+ RY   RSYSRSP    SRGRS +  R +SRS S S  R
Sbjct: 181 PREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRR 219

[Close]

BLAST of MS022953.1 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 227.3 bits (578), Expect = 1.2e-59
Identity = 147/234 (62.82%), Postives = 165/234 (70.51%), Query Frame = 0


Query: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDR-GGRGRDLPTSLLVRNLRHDCRPEDLRGLFGR 60
           MRGR  SY+PSPPR YGRR RSPSPR R GGR RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGPLKDIYLPRDYYSG------------EPRGFGFVQFVDPADAADAKYELDGQVLLGRE 120
           FGP+KDIYLPRDYY+G            +PRGFGFVQF+DPADAADAK+ +DG +LLGRE
Sbjct: 61  FGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGYLLLGRE 120

Query: 121 LTVVFAEENRKRPEEMRARDSSRLGRSYNYRRSPLRY---SRS--PHYDRKYSHSPEYYS 180
           LTVVFAEENRK+P EMRAR+     R  + RR+P RY   SRS  P   R  S S +YYS
Sbjct: 121 LTVVFAEENRKKPTEMRARERGGGSRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYS 180

Query: 181 PAQSGRYSRSISPRDRRY-RERSYSRSPYD--SRGRSYS--RSRSRSYSRSYSR 212
           P     + RSISPR+ RY   RSYSRSP    SRGRS +  R +SRS S S  R
Sbjct: 181 PPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRR 232

[Close]

BLAST of MS022953.1 vs. TAIR 10
Match: AT5G18810.1 (SC35-like splicing factor 28 )

HSP 1 Score: 137.9 bits (346), Expect = 9.5e-33
Identity = 106/236 (44.92%), Postives = 131/236 (55.51%), Query Frame = 0


Query: 2   RGRSYSYSP-----SPPRSY-----GRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPE 61
           R RS SYSP     SPPR        R    PS RD    G   P+ LL+RNL  D RP 
Sbjct: 5   RSRSRSYSPRPRDRSPPRERKGYDDNRLRERPSSRDHESSG---PSGLLIRNLPLDARPN 64

Query: 62  DLRGLFGRFGPLKDIYLPRDYYSGEPRGFGFVQFVDPADAADAKYELDGQVLLGRELTVV 121
           DLR  F RFGPLKDIYLPR+YY+GEPRGFGFV++    DAA+A   ++ +V+ GRE+ +V
Sbjct: 65  DLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIV 124

Query: 122 FAEENRKRPEEMRARDSSRLGRSYNYRRSPLRYSRSPHYDRKYSHSP------------- 181
           FAEENRK P+EMR  + +  GR  +Y+R+  R  R  +     S SP             
Sbjct: 125 FAEENRKTPQEMRTTNGTS-GRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRHSKVRED 184

Query: 182 EYYSPAQSGR-YSRSISPRDRRYRERSYSRSPYDS------RGRSYSRSRSRSYSR 208
           + YSP +  R  SRS  PR+ R  +    RSP +       R R  SRSRSRS SR
Sbjct: 185 DLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTPIRSRCLSRSRSRSLSR 236

The following BLAST results are available for this feature:

BLAST of MS022953.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151394.1	4.2e-107	97.63	serine/arginine-rich SC35-like splicing factor SCL33 [Momordica charantia]	[more]
XP_008443002.1	1.5e-96	91.55	PREDICTED: serine/arginine-rich SC35-like splicing factor SCL33 [Cucumis melo]	[more]
KAG6596659.1	4.3e-96	89.57	Serine/arginine-rich SC35-like splicing factor SCL30A, partial [Cucurbita argyro...	[more]
XP_022948463.1	1.3e-95	89.20	serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucurbita mosch...	[more]
XP_022948454.1	1.3e-95	89.20	serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucurbita mosch...	[more]

BLAST of MS022953.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LHP2	4.7e-61	65.91	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q9SEU4	6.1e-61	66.67	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q1PDV2	1.3e-31	44.92	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
Q8L3X8	4.3e-30	43.05	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
O75494	4.9e-26	43.39	Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 S...	[more]

BLAST of MS022953.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCY5	2.0e-107	97.63	serine/arginine-rich SC35-like splicing factor SCL33 OS=Momordica charantia OX=3...	[more]
A0A1S3B7U0	7.2e-97	91.55	serine/arginine-rich SC35-like splicing factor SCL33 OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1G9Y1	6.1e-96	89.20	serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 OS=Cucurbita mos...	[more]
A0A6J1G9Y3	6.1e-96	89.20	serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita mos...	[more]
A0A6J1G9D2	6.1e-96	89.20	serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita mos...	[more]

BLAST of MS022953.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55310.2	3.3e-62	66.82	SC35-like splicing factor 33	[more]
AT3G13570.1	3.3e-62	65.91	SC35-like splicing factor 30A	[more]
AT1G55310.1	4.4e-62	66.67	SC35-like splicing factor 33	[more]
AT1G55310.3	1.2e-59	62.82	SC35-like splicing factor 33	[more]
AT5G18810.1	9.5e-33	44.92	SC35-like splicing factor 28	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 38..111 e-value: 1.5E-22 score: 90.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 39..108 e-value: 1.6E-19 score: 69.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 37..115 score: 17.932785
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 26..145 e-value: 3.6E-26 score: 93.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..198
None	No IPR available	PANTHER	PTHR23147:SF155	SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A	coord: 1..209
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..209
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 37..141

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS022953	MS022953	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS022953.1-cds	MS022953.1-cds-scaffold357:67443..67588	CDS
MS022953.1-cds	MS022953.1-cds-scaffold357:68828..68905	CDS
MS022953.1-cds	MS022953.1-cds-scaffold357:69856..70023	CDS
MS022953.1-cds	MS022953.1-cds-scaffold357:70489..70608	CDS
MS022953.1-cds	MS022953.1-cds-scaffold357:70861..70981	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS022953.1	MS022953.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding