MS022082.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS022082.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	30S ribosomal protein S2, chloroplastic
Location	scaffold47: 619882 .. 619962 (-)
Sequence length	81
RNA-Seq Expression	MS022082.1
Synteny	MS022082.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGATTGAAAAATATTGGAACATCTATTTGGAAGAGATGATAGAAGCAGGAGTTCATTTTGGTCCTGGTACTAGGAAATTT

mRNA sequence

TTGATTGAAAAATATTGGAACATCTATTTGGAAGAGATGATAGAAGCAGGAGTTCATTTTGGTCCTGGTACTAGGAAATTT

Coding sequence (CDS)

TTGATTGAAAAATATTGGAACATCTATTTGGAAGAGATGATAGAAGCAGGAGTTCATTTTGGTCCTGGTACTAGGAAATTT

Protein sequence

LIEKYWNIYLEEMIEAGVHFGPGTRKF

Homology

[Close]

BLAST of MS022082.1 vs. NCBI nr
Match: YP_009973478.1 (ribosomal protein S2 [Oxalis corniculata] >AMC32581.1 ribosomal protein S2 [Oxalis dillenii] >QWE50294.1 ribosomal protein S2 [Oxalis corymbosa] >QXE43468.1 ribosomal protein S2 [Oxalis pes-caprae] >QNH92930.1 ribosomal protein S2 [Oxalis corniculata] >QPK76595.1 ribosomal protein S2 [Oxalis corniculata])

HSP 1 Score: 53.1 bits (126), Expect = 4.2e-04
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1  LIEKYWNIYLEEMIEAGVHFGPGTRKF 28
          +I KYWNI+LEEM+EAGVHFG GTRK+
Sbjct: 1  MIRKYWNIHLEEMMEAGVHFGHGTRKW 27

[Close]

BLAST of MS022082.1 vs. NCBI nr
Match: YP_009753078.1 (ribosomal protein S2 [Corallocarpus boehmii] >QIT06150.1 ribosomal protein S2 [Corallocarpus boehmii])

HSP 1 Score: 52.0 bits (123), Expect = 9.4e-04
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1  LIEKYWNIYLEEMIEAGVHFGPGTRKF 28
          +  +YWNIYLEEM+EAGVHFG GTRK+
Sbjct: 1  MTRRYWNIYLEEMMEAGVHFGHGTRKW 27

[Close]

BLAST of MS022082.1 vs. NCBI nr
Match: AFU95272.1 (Rps2, partial [Humiria balsamifera])

HSP 1 Score: 52.0 bits (123), Expect = 9.4e-04
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1  LIEKYWNIYLEEMIEAGVHFGPGTRKF 28
          +I KYWNI LEEM+EAGVHFG GTRK+
Sbjct: 1  MIRKYWNINLEEMLEAGVHFGHGTRKW 27

[Close]

BLAST of MS022082.1 vs. NCBI nr
Match: AFU95291.1 (Rps2, partial [Schistostemon retusum])

HSP 1 Score: 52.0 bits (123), Expect = 9.4e-04
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1  LIEKYWNIYLEEMIEAGVHFGPGTRKF 28
          +I KYWNI LEEM+EAGVHFG GTRK+
Sbjct: 1  MIRKYWNINLEEMLEAGVHFGHGTRKW 27

[Close]

BLAST of MS022082.1 vs. NCBI nr
Match: YP_010034587.1 (ribosomal protein S2 [Aponogeton lakhonensis] >QOX09396.1 ribosomal protein S2 [Aponogeton lakhonensis])

HSP 1 Score: 52.0 bits (123), Expect = 9.4e-04
Identity = 20/27 (74.07%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1  LIEKYWNIYLEEMIEAGVHFGPGTRKF 28
          +I +YWNI+LEEM+EAGVHFG GTRK+
Sbjct: 1  MIRRYWNIHLEEMMEAGVHFGHGTRKW 27

[Close]

BLAST of MS022082.1 vs. ExPASy Swiss-Prot
Match: A1XGM7 (30S ribosomal protein S2, chloroplastic OS=Ranunculus macranthus OX=334596 GN=rps2 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 3.6e-06
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1  LIEKYWNIYLEEMIEAGVHFGPGTRKF 28
          +I +YWNI LEEM+EAGVHFG GTRK+
Sbjct: 1  MIRRYWNINLEEMMEAGVHFGHGTRKW 27

[Close]

BLAST of MS022082.1 vs. ExPASy Swiss-Prot
Match: Q4VZP4 (30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.7e-06
Identity = 19/27 (70.37%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1  LIEKYWNIYLEEMIEAGVHFGPGTRKF 28
          +  +YWNI+LEEM+EAGVHFG GTRK+
Sbjct: 1  MTRRYWNIHLEEMMEAGVHFGHGTRKW 27

[Close]

BLAST of MS022082.1 vs. ExPASy Swiss-Prot
Match: Q0G9N0 (30S ribosomal protein S2, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps2 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 4.7e-06
Identity = 19/27 (70.37%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1  LIEKYWNIYLEEMIEAGVHFGPGTRKF 28
          +  +YWNI+LEEM+EAGVHFG GTRK+
Sbjct: 1  MTRRYWNIHLEEMMEAGVHFGHGTRKW 27

[Close]

BLAST of MS022082.1 vs. ExPASy Swiss-Prot
Match: Q09MI9 (30S ribosomal protein S2, chloroplastic OS=Citrus sinensis OX=2711 GN=rps2 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 6.1e-06
Identity = 18/27 (66.67%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1  LIEKYWNIYLEEMIEAGVHFGPGTRKF 28
          +  +YWNI+LEEM+EAG+HFG GTRK+
Sbjct: 1  MARRYWNIHLEEMMEAGIHFGHGTRKW 27

[Close]

BLAST of MS022082.1 vs. ExPASy Swiss-Prot
Match: A4GGA8 (30S ribosomal protein S2, chloroplastic OS=Phaseolus vulgaris OX=3885 GN=rps2 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 8.0e-06
Identity = 19/27 (70.37%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1  LIEKYWNIYLEEMIEAGVHFGPGTRKF 28
          + ++YWNI LEEM+EAGVHFG GTRK+
Sbjct: 1  MTKRYWNIILEEMMEAGVHFGHGTRKW 27

[Close]

BLAST of MS022082.1 vs. ExPASy TrEMBL
Match: A0A7G7YEL0 (30S ribosomal protein S2, chloroplastic OS=Oxalis corniculata OX=212256 GN=rps2 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-04
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1  LIEKYWNIYLEEMIEAGVHFGPGTRKF 28
          +I KYWNI+LEEM+EAGVHFG GTRK+
Sbjct: 1  MIRKYWNIHLEEMMEAGVHFGHGTRKW 27

[Close]

BLAST of MS022082.1 vs. ExPASy TrEMBL
Match: A0A0Y0UQW7 (30S ribosomal protein S2, chloroplastic OS=Oxalis dillenii OX=4035 GN=rps2 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-04
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1  LIEKYWNIYLEEMIEAGVHFGPGTRKF 28
          +I KYWNI+LEEM+EAGVHFG GTRK+
Sbjct: 1  MIRKYWNIHLEEMMEAGVHFGHGTRKW 27

[Close]

BLAST of MS022082.1 vs. ExPASy TrEMBL
Match: T1L6U5 (30S ribosomal protein S2, chloroplastic OS=Triticum urartu OX=4572 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.0e-04
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1  LIEKYWNIYLEEMIEAGVHFGPGTRKF 28
          +I KYWNI+LEEM+EAGVHFG GTRK+
Sbjct: 1  MIRKYWNIHLEEMMEAGVHFGHGTRKW 27

[Close]

BLAST of MS022082.1 vs. ExPASy TrEMBL
Match: A0A6H0EVW6 (30S ribosomal protein S2, chloroplastic OS=Corallocarpus boehmii OX=386154 GN=rps2 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.6e-04
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1  LIEKYWNIYLEEMIEAGVHFGPGTRKF 28
          +  +YWNIYLEEM+EAGVHFG GTRK+
Sbjct: 1  MTRRYWNIYLEEMMEAGVHFGHGTRKW 27

[Close]

BLAST of MS022082.1 vs. ExPASy TrEMBL
Match: A0A411JTJ5 (Ribosomal protein S2 OS=Montia fontana OX=313220 GN=rps2 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 4.6e-04
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 0


Query: 1  LIEKYWNIYLEEMIEAGVHFGPGTRKF 28
          +  +YWNIYLEEM+EAGVHFG GTRK+
Sbjct: 1  MTRRYWNIYLEEMMEAGVHFGHGTRKW 27

[Close]

BLAST of MS022082.1 vs. TAIR 10
Match: ATCG00160.1 (ribosomal protein S2 )

HSP 1 Score: 46.6 bits (109), Expect = 3.7e-06
Identity = 18/27 (66.67%), Postives = 23/27 (85.19%), Query Frame = 0


Query: 1  LIEKYWNIYLEEMIEAGVHFGPGTRKF 28
          + ++YWNI LEEM+ AGVHFG GTRK+
Sbjct: 1  MTKRYWNIDLEEMMRAGVHFGHGTRKW 27

The following BLAST results are available for this feature:

BLAST of MS022082.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009973478.1	4.2e-04	77.78	ribosomal protein S2 [Oxalis corniculata] >AMC32581.1 ribosomal protein S2 [Oxal...	[more]
YP_009753078.1	9.4e-04	74.07	ribosomal protein S2 [Corallocarpus boehmii] >QIT06150.1 ribosomal protein S2 [C...	[more]
AFU95272.1	9.4e-04	77.78	Rps2, partial [Humiria balsamifera]	[more]
AFU95291.1	9.4e-04	77.78	Rps2, partial [Schistostemon retusum]	[more]
YP_010034587.1	9.4e-04	74.07	ribosomal protein S2 [Aponogeton lakhonensis] >QOX09396.1 ribosomal protein S2 [...	[more]

BLAST of MS022082.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A1XGM7	3.6e-06	74.07	30S ribosomal protein S2, chloroplastic OS=Ranunculus macranthus OX=334596 GN=rp...	[more]
Q4VZP4	4.7e-06	70.37	30S ribosomal protein S2, chloroplastic OS=Cucumis sativus OX=3659 GN=rps2 PE=3 ...	[more]
Q0G9N0	4.7e-06	70.37	30S ribosomal protein S2, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rp...	[more]
Q09MI9	6.1e-06	66.67	30S ribosomal protein S2, chloroplastic OS=Citrus sinensis OX=2711 GN=rps2 PE=3 ...	[more]
A4GGA8	8.0e-06	70.37	30S ribosomal protein S2, chloroplastic OS=Phaseolus vulgaris OX=3885 GN=rps2 PE...	[more]

BLAST of MS022082.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7G7YEL0	2.0e-04	77.78	30S ribosomal protein S2, chloroplastic OS=Oxalis corniculata OX=212256 GN=rps2 ...	[more]
A0A0Y0UQW7	2.0e-04	77.78	30S ribosomal protein S2, chloroplastic OS=Oxalis dillenii OX=4035 GN=rps2 PE=3 ...	[more]
T1L6U5	2.0e-04	77.78	30S ribosomal protein S2, chloroplastic OS=Triticum urartu OX=4572 PE=3 SV=1	[more]
A0A6H0EVW6	4.6e-04	74.07	30S ribosomal protein S2, chloroplastic OS=Corallocarpus boehmii OX=386154 GN=rp...	[more]
A0A411JTJ5	4.6e-04	74.07	Ribosomal protein S2 OS=Montia fontana OX=313220 GN=rps2 PE=3 SV=1	[more]

BLAST of MS022082.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00160.1	3.7e-06	66.67	ribosomal protein S2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018130	Ribosomal protein S2, conserved site	PROSITE	PS00962	RIBOSOMAL_S2_1	coord: 10..21

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS022082	MS022082	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS022082.1-cds	MS022082.1-cds-scaffold47:619882..619962	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS022082.1	MS022082.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome