MS021928.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS021928.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	R2R3 MYB transcription factor
Location	scaffold110: 233084 .. 235208 (-)
Sequence length	240
RNA-Seq Expression	MS021928.1
Synteny	MS021928.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTTAAACAGATGCAGAAAGAGTTGCAGACTGAGATGGTTGAATTATCTTCGTCCAAATATCAAAAGAGGAAGCTTCACACCAGAGGAAGTAGACCTCATTTTCAGCCTCCACAGTCTCTTGGGCAACAGGCAAGTCTTATATATATTTACTTCTTCTCGAAATTACTTTCTAGACCTATCCTCATTGTTCGAGTTAATTTATTCAATTTAAATAACCTTTATTAATAATGAATCCAATACAATCCAACGATGAATAATTAGATTAGATTGATTCGGGTTATTCGAGTAACTCATTCAAAATACTGTATAAAATAAGAAAGTAAATGCTAATATTCTTAAATGTTTATTTAGATATTTTCTAACATTAAATCGAAATCGTAAGTCGATGTTTATCTACCTGGTGAAAAATTACCCACCAAAAACTTAAAAATTGCTTTTAAAAGTTGTTGGAGAATAAATAATGCATAAATAATTATTGAAATTAAAATTGAAATATCCATGTTTTTATATATATATATTTGCAAAGGCATGTATAATTTTATGGTGAGTTTAAAAAAATTGAAATATCTATATATATATATATGCAAAGGCATGTATAATTTTATGGCGAATTTAAAAAAATTGAAAATTAATAATAAAATTCAGTTGGTTCGATTCAACACAAATTTATTTTAGGTGAAGCCTTGAACTAATTCAACCTTAAAAGTTTTCATTTATTTGAAAACCAATCCAATCTAAACAATTGTATAACTCAACCCAACCTTTGGTTTTCCGGATGATCTCTTGTACAACAAGCCTAGTTTTATATAATTAGAATGCTACCAAAGCAAATGCACGAAATATTTTTAATTTAATAGTAAAATCAATAAGTAAAAGAATAAAAAAGTAATACCACTAATTGTTAAAAAAAAACTAATAATAAACAAAGAAGAAAATTAAGATGTCTCTATGCAAACTTTTTCAAAATATATTTATTTAGTTGAAAGCAAAATATGTTTACTCAACTTTAAAATCGAATGATAACATCTCAAACATAGCATATAAAATATGGTTGAAAACGTTGTGACTTTGGAGAAAGTGTTTAGTGGACTAAAATTTGTTCAGTACTTATTTTAACAAGGCAATTTGTTTTATTGGCCAAGTGTAATGATCGTTTTTGTAGCTTTTGTTTGTGGTGCGTCGTCACCACTTTTATGATGTAACCATTAGTGGTCATGTTTCTTTTTAATGCAATGTTTCTTTGAAAAAAAAAAACCTCTAGCTGTCAGGTTTCGTTTTTGGGTAAGTATTTTAAAGAAAATAAGCAAAAACCAAAATCAATATCAAATGAGTAATTTCATTTTATTTCTACAACTTCTCAATTTAATTTTTATATACACCAAATCAATAATTTTTATCAATAATTGATAAAAGTCCATGTTAGTAGATATACCTAGAAAAATTGTAGTGATAAAAAAAATTATACAAATAATTTCAATTGCTAAATACGTATCTTAAATTTCTTAAATAAACTAAAAATCTTATTGTTAATATTTGCTACTATTTTTGTTGACAGTTCATACCTTTTATCAATATTATTTTTATGACAATATTGATTACTGATCTCTATTAATATTTTTAGAGTTCAATCTCAAAACTAATTGATTATGGGAGTATAATAGCATATTTATACTATAAATCGTCTTTTATCTATTCAATGTGGGATCTTAACATGCCACTCAAATAGTGTTTCTTTTGGATTCACCAATCGGGGGCCGAATCTCATTTTTGGACCGCGTACTCGTTTGAGCTTTTGGTCTCTAATACCATATCAATCTTCGTAGAATTTTATCTTAAAAATAATTCACAATAAGAGGATTAATCTACTTGTATTATAAACTCTTGTTACCCCAATGTCTATATCAAACCCTTAGGTTCATATAGTCGATAAATCCATGTACAATGTATACATATAGAAAAATGCGAATATAAACGCAAGTTTCGAAACGAAAATTAGTCAGATTAACAACAAAAGGAAGACATTTTTGGTGTGTACTAGGTGGTCAGTAATTGCAGGAAGATTACCAGGAAGAACAGCAAATGATATAAAGAACTATTGGAATTGCCATTTGAGCAAGAAGCTG

mRNA sequence

GGTTTAAACAGATGCAGAAAGAGTTGCAGACTGAGATGGTTGAATTATCTTCGTCCAAATATCAAAAGAGGAAGCTTCACACCAGAGGAAGTAGACCTCATTTTCAGCCTCCACAGTCTCTTGGGCAACAGGCAAACATTTTTGGTGTGTACTAGGTGGTCAGTAATTGCAGGAAGATTACCAGGAAGAACAGCAAATGATATAAAGAACTATTGGAATTGCCATTTGAGCAAGAAGCTG

Coding sequence (CDS)

GGTTTAAACAGATGCAGAAAGAGTTGCAGACTGAGATGGTTGAATTATCTTCGTCCAAATATCAAAAGAGGAAGCTTCACACCAGAGGAAGTAGACCTCATTTTCAGCCTCCACAGTCTCTTGGGCAACAGGCAAACATTTTTGGTGTGTACTAGGTGGTCAGTAATTGCAGGAAGATTACCAGGAAGAACAGCAAATGATATAAAGAACTATTGGAATTGCCATTTGAGCAAGAAGCTG

Protein sequence

GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRLPGRTANDIKNYWNCHLSKKL

Homology

[Close]

BLAST of MS021928.1 vs. NCBI nr
Match: XP_022144451.1 (transcription factor WER-like [Momordica charantia])

HSP 1 Score: 152.9 bits (385), Expect = 1.2e-33
Identity = 72/80 (90.00%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGN        RWSVIAGRL
Sbjct: 34  GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGN--------RWSVIAGRL 93

Query: 61  PGRTANDIKNYWNCHLSKKL 81
           PGRTANDIKNYWNCHLSKKL
Sbjct: 94  PGRTANDIKNYWNCHLSKKL 105

[Close]

BLAST of MS021928.1 vs. NCBI nr
Match: XP_008441809.1 (PREDICTED: transcription factor MYB90-like [Cucumis melo])

HSP 1 Score: 146.7 bits (369), Expect = 8.3e-32
Identity = 67/80 (83.75%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCRLRWLNYLRPNIKRGSFTP+EVDLI +LH+LLGN        RWS+IAGRL
Sbjct: 34  GLNRCRKSCRLRWLNYLRPNIKRGSFTPQEVDLILNLHNLLGN--------RWSIIAGRL 93

Query: 61  PGRTANDIKNYWNCHLSKKL 81
           PGRTANDIKNYWNCHLSKKL
Sbjct: 94  PGRTANDIKNYWNCHLSKKL 105

[Close]

BLAST of MS021928.1 vs. NCBI nr
Match: XP_004138976.1 (transcription factor MYB1-like [Cucumis sativus] >KAE8651728.1 hypothetical protein Csa_006721 [Cucumis sativus])

HSP 1 Score: 146.0 bits (367), Expect = 1.4e-31
Identity = 66/80 (82.50%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCRLRWLNYLRPNIKRGSFTP+EVDLI +LH++LGN        RWS+IAGRL
Sbjct: 34  GLNRCRKSCRLRWLNYLRPNIKRGSFTPQEVDLILNLHNILGN--------RWSIIAGRL 93

Query: 61  PGRTANDIKNYWNCHLSKKL 81
           PGRTANDIKNYWNCHLSKKL
Sbjct: 94  PGRTANDIKNYWNCHLSKKL 105

[Close]

BLAST of MS021928.1 vs. NCBI nr
Match: XP_038891035.1 (transcription factor MYB1-like [Benincasa hispida])

HSP 1 Score: 144.8 bits (364), Expect = 3.2e-31
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCRLRWLNYLRPNIKRGSFTP+EVDLI +LH++LGN        RWS+IAGRL
Sbjct: 34  GLNRCRKSCRLRWLNYLRPNIKRGSFTPQEVDLILNLHNILGN--------RWSIIAGRL 93

Query: 61  PGRTANDIKNYWNCHLSKKL 81
           PGRTANDIKNYWNCHLSK+L
Sbjct: 94  PGRTANDIKNYWNCHLSKRL 105

[Close]

BLAST of MS021928.1 vs. NCBI nr
Match: XP_010027133.2 (transcription factor MYB1 [Eucalyptus grandis])

HSP 1 Score: 144.4 bits (363), Expect = 4.1e-31
Identity = 67/80 (83.75%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCRLRWLNYLRPNIKRGSFT EEVDLI  LHSLLGN        RWS+IAGRL
Sbjct: 34  GLNRCRKSCRLRWLNYLRPNIKRGSFTEEEVDLIIQLHSLLGN--------RWSLIAGRL 93

Query: 61  PGRTANDIKNYWNCHLSKKL 81
           PGRTAND+KNYWNCHLSKKL
Sbjct: 94  PGRTANDVKNYWNCHLSKKL 105

[Close]

BLAST of MS021928.1 vs. ExPASy Swiss-Prot
Match: A0A2R6S148 (Transcription factor MYB1 OS=Actinidia chinensis var. chinensis OX=1590841 GN=MYB1 PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 6.2e-30
Identity = 59/80 (73.75%), Postives = 65/80 (81.25%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCR+RWLNYLRPNI RG+FT +EVDLI  LH LLGN        RWS+IAGRL
Sbjct: 41  GLNRCRKSCRMRWLNYLRPNINRGNFTADEVDLIIRLHKLLGN--------RWSLIAGRL 100

Query: 61  PGRTANDIKNYWNCHLSKKL 81
           PGRT+ND+KNYWN HL KKL
Sbjct: 101 PGRTSNDVKNYWNTHLQKKL 112

[Close]

BLAST of MS021928.1 vs. ExPASy Swiss-Prot
Match: Q9FNV8 (Transcription factor MYB114 OS=Arabidopsis thaliana OX=3702 GN=MYB114 PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.4e-29
Identity = 58/79 (73.42%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCRLRWLNYL+P+IKRG F+ +EVDL+  LH LLGN        RWS+IAGRL
Sbjct: 41  GLNRCRKSCRLRWLNYLKPSIKRGKFSSDEVDLLLRLHKLLGN--------RWSLIAGRL 100

Query: 61  PGRTANDIKNYWNCHLSKK 80
           PGRTAND+KNYWN HLSKK
Sbjct: 101 PGRTANDVKNYWNTHLSKK 111

[Close]

BLAST of MS021928.1 vs. ExPASy Swiss-Prot
Match: Q9FNV9 (Transcription factor MYB113 OS=Arabidopsis thaliana OX=3702 GN=MYB113 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-28
Identity = 57/79 (72.15%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCRLRWLNYL+P+IKRG    +EVDL+  LH LLGN        RWS+IAGRL
Sbjct: 41  GLNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGN--------RWSLIAGRL 100

Query: 61  PGRTANDIKNYWNCHLSKK 80
           PGRTAND+KNYWN HLSKK
Sbjct: 101 PGRTANDVKNYWNTHLSKK 111

[Close]

BLAST of MS021928.1 vs. ExPASy Swiss-Prot
Match: Q9FE25 (Transcription factor MYB75 OS=Arabidopsis thaliana OX=3702 GN=MYB75 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.5e-28
Identity = 57/79 (72.15%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCRLRWLNYL+P+IKRG  + +EVDL+  LH LLGN        RWS+IAGRL
Sbjct: 41  GLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGN--------RWSLIAGRL 100

Query: 61  PGRTANDIKNYWNCHLSKK 80
           PGRTAND+KNYWN HLSKK
Sbjct: 101 PGRTANDVKNYWNTHLSKK 111

[Close]

BLAST of MS021928.1 vs. ExPASy Swiss-Prot
Match: Q9ZTC3 (Transcription factor MYB90 OS=Arabidopsis thaliana OX=3702 GN=MYB90 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.0e-28
Identity = 57/79 (72.15%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCRLRWLNYL+P+IKRG  + +EVDL+  LH LLGN        RWS+IAGRL
Sbjct: 41  GLNRCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGN--------RWSLIAGRL 100

Query: 61  PGRTANDIKNYWNCHLSKK 80
           PGRTAND+KNYWN HLSKK
Sbjct: 101 PGRTANDVKNYWNTHLSKK 111

[Close]

BLAST of MS021928.1 vs. ExPASy TrEMBL
Match: A0A6J1CTG0 (transcription factor WER-like OS=Momordica charantia OX=3673 GN=LOC111014133 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 5.6e-34
Identity = 72/80 (90.00%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGN        RWSVIAGRL
Sbjct: 34  GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGN--------RWSVIAGRL 93

Query: 61  PGRTANDIKNYWNCHLSKKL 81
           PGRTANDIKNYWNCHLSKKL
Sbjct: 94  PGRTANDIKNYWNCHLSKKL 105

[Close]

BLAST of MS021928.1 vs. ExPASy TrEMBL
Match: A0A1S3B4A4 (transcription factor MYB90-like OS=Cucumis melo OX=3656 GN=LOC103485861 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.0e-32
Identity = 67/80 (83.75%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCRLRWLNYLRPNIKRGSFTP+EVDLI +LH+LLGN        RWS+IAGRL
Sbjct: 34  GLNRCRKSCRLRWLNYLRPNIKRGSFTPQEVDLILNLHNLLGN--------RWSIIAGRL 93

Query: 61  PGRTANDIKNYWNCHLSKKL 81
           PGRTANDIKNYWNCHLSKKL
Sbjct: 94  PGRTANDIKNYWNCHLSKKL 105

[Close]

BLAST of MS021928.1 vs. ExPASy TrEMBL
Match: A0A059B607 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H04157 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.0e-31
Identity = 67/80 (83.75%), Postives = 69/80 (86.25%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCRLRWLNYLRPNIKRGSFT EEVDLI  LHSLLGN        RWS+IAGRL
Sbjct: 34  GLNRCRKSCRLRWLNYLRPNIKRGSFTEEEVDLIIQLHSLLGN--------RWSLIAGRL 93

Query: 61  PGRTANDIKNYWNCHLSKKL 81
           PGRTAND+KNYWNCHLSKKL
Sbjct: 94  PGRTANDVKNYWNCHLSKKL 105

[Close]

BLAST of MS021928.1 vs. ExPASy TrEMBL
Match: A0A6J1KE93 (transcription factor MYB1-like OS=Cucurbita maxima OX=3661 GN=LOC111492445 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.0e-31
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEV+LI +LH++LGN        RWS+IAGRL
Sbjct: 34  GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVELILNLHNILGN--------RWSIIAGRL 93

Query: 61  PGRTANDIKNYWNCHLSKKL 81
           PGRTANDIKNYWNCHLSKK+
Sbjct: 94  PGRTANDIKNYWNCHLSKKV 105

[Close]

BLAST of MS021928.1 vs. ExPASy TrEMBL
Match: A0A6J1EYC9 (transcription factor MYB1-like OS=Cucurbita moschata OX=3662 GN=LOC111440018 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.0e-31
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEV+LI +LH++LGN        RWS+IAGRL
Sbjct: 34  GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVELILNLHNILGN--------RWSIIAGRL 93

Query: 61  PGRTANDIKNYWNCHLSKKL 81
           PGRTANDIKNYWNCHLSKK+
Sbjct: 94  PGRTANDIKNYWNCHLSKKV 105

[Close]

BLAST of MS021928.1 vs. TAIR 10
Match: AT1G66380.1 (myb domain protein 114 )

HSP 1 Score: 129.0 bits (323), Expect = 1.7e-30
Identity = 58/79 (73.42%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCRLRWLNYL+P+IKRG F+ +EVDL+  LH LLGN        RWS+IAGRL
Sbjct: 41  GLNRCRKSCRLRWLNYLKPSIKRGKFSSDEVDLLLRLHKLLGN--------RWSLIAGRL 100

Query: 61  PGRTANDIKNYWNCHLSKK 80
           PGRTAND+KNYWN HLSKK
Sbjct: 101 PGRTANDVKNYWNTHLSKK 111

[Close]

BLAST of MS021928.1 vs. TAIR 10
Match: AT1G56650.1 (production of anthocyanin pigment 1 )

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-29
Identity = 57/79 (72.15%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCRLRWLNYL+P+IKRG  + +EVDL+  LH LLGN        RWS+IAGRL
Sbjct: 41  GLNRCRKSCRLRWLNYLKPSIKRGKLSSDEVDLLLRLHRLLGN--------RWSLIAGRL 100

Query: 61  PGRTANDIKNYWNCHLSKK 80
           PGRTAND+KNYWN HLSKK
Sbjct: 101 PGRTANDVKNYWNTHLSKK 111

[Close]

BLAST of MS021928.1 vs. TAIR 10
Match: AT1G66370.1 (myb domain protein 113 )

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-29
Identity = 57/79 (72.15%), Postives = 63/79 (79.75%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCRLRWLNYL+P+IKRG    +EVDL+  LH LLGN        RWS+IAGRL
Sbjct: 41  GLNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGN--------RWSLIAGRL 100

Query: 61  PGRTANDIKNYWNCHLSKK 80
           PGRTAND+KNYWN HLSKK
Sbjct: 101 PGRTANDVKNYWNTHLSKK 111

[Close]

BLAST of MS021928.1 vs. TAIR 10
Match: AT1G66390.1 (myb domain protein 90 )

HSP 1 Score: 125.9 bits (315), Expect = 1.4e-29
Identity = 57/79 (72.15%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GLNRCRKSCRLRWLNYL+P+IKRG  + +EVDL+  LH LLGN        RWS+IAGRL
Sbjct: 41  GLNRCRKSCRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGN--------RWSLIAGRL 100

Query: 61  PGRTANDIKNYWNCHLSKK 80
           PGRTAND+KNYWN HLSKK
Sbjct: 101 PGRTANDVKNYWNTHLSKK 111

[Close]

BLAST of MS021928.1 vs. TAIR 10
Match: AT1G22640.1 (myb domain protein 3 )

HSP 1 Score: 118.6 bits (296), Expect = 2.3e-27
Identity = 53/80 (66.25%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 1   GLNRCRKSCRLRWLNYLRPNIKRGSFTPEEVDLIFSLHSLLGNRQTFLVCTRWSVIAGRL 60
           GL RC KSCRLRW+NYLRP++KRG+FT EE +LI  LHSLLGN        +WS+IAGRL
Sbjct: 45  GLQRCGKSCRLRWMNYLRPDLKRGNFTEEEDELIIKLHSLLGN--------KWSLIAGRL 104

Query: 61  PGRTANDIKNYWNCHLSKKL 81
           PGRT N+IKNYWN H+ +KL
Sbjct: 105 PGRTDNEIKNYWNTHIKRKL 116

The following BLAST results are available for this feature:

BLAST of MS021928.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144451.1	1.2e-33	90.00	transcription factor WER-like [Momordica charantia]	[more]
XP_008441809.1	8.3e-32	83.75	PREDICTED: transcription factor MYB90-like [Cucumis melo]	[more]
XP_004138976.1	1.4e-31	82.50	transcription factor MYB1-like [Cucumis sativus] >KAE8651728.1 hypothetical prot...	[more]
XP_038891035.1	3.2e-31	81.25	transcription factor MYB1-like [Benincasa hispida]	[more]
XP_010027133.2	4.1e-31	83.75	transcription factor MYB1 [Eucalyptus grandis]	[more]

BLAST of MS021928.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A2R6S148	6.2e-30	73.75	Transcription factor MYB1 OS=Actinidia chinensis var. chinensis OX=1590841 GN=MY...	[more]
Q9FNV8	2.4e-29	73.42	Transcription factor MYB114 OS=Arabidopsis thaliana OX=3702 GN=MYB114 PE=1 SV=1	[more]
Q9FNV9	1.5e-28	72.15	Transcription factor MYB113 OS=Arabidopsis thaliana OX=3702 GN=MYB113 PE=1 SV=1	[more]
Q9FE25	1.5e-28	72.15	Transcription factor MYB75 OS=Arabidopsis thaliana OX=3702 GN=MYB75 PE=1 SV=1	[more]
Q9ZTC3	2.0e-28	72.15	Transcription factor MYB90 OS=Arabidopsis thaliana OX=3702 GN=MYB90 PE=1 SV=1	[more]

BLAST of MS021928.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTG0	5.6e-34	90.00	transcription factor WER-like OS=Momordica charantia OX=3673 GN=LOC111014133 PE=...	[more]
A0A1S3B4A4	4.0e-32	83.75	transcription factor MYB90-like OS=Cucumis melo OX=3656 GN=LOC103485861 PE=4 SV=...	[more]
A0A059B607	2.0e-31	83.75	Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H04157 PE=4 SV...	[more]
A0A6J1KE93	2.0e-31	81.25	transcription factor MYB1-like OS=Cucurbita maxima OX=3661 GN=LOC111492445 PE=4 ...	[more]
A0A6J1EYC9	2.0e-31	81.25	transcription factor MYB1-like OS=Cucurbita moschata OX=3662 GN=LOC111440018 PE=...	[more]

BLAST of MS021928.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66380.1	1.7e-30	73.42	myb domain protein 114	[more]
AT1G56650.1	1.1e-29	72.15	production of anthocyanin pigment 1	[more]
AT1G66370.1	1.1e-29	72.15	myb domain protein 113	[more]
AT1G66390.1	1.4e-29	72.15	myb domain protein 90	[more]
AT1G22640.1	2.3e-27	66.25	myb domain protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 22..78 e-value: 3.4E-12 score: 56.5
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 18..76 score: 9.337777
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 25..76 e-value: 5.02055E-10 score: 47.9554
None	No IPR available	GENE3D	1.10.10.60		coord: 2..22 e-value: 1.1E-5 score: 27.3
None	No IPR available	GENE3D	1.10.10.60		coord: 25..80 e-value: 3.5E-18 score: 67.2
None	No IPR available	PANTHER	PTHR47999	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	coord: 1..80
None	No IPR available	PANTHER	PTHR47999:SF20	MYB TRANSCRIPTION FACTOR	coord: 1..80
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 23..73 e-value: 3.4E-12 score: 46.4
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 18..80 score: 19.283209
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 3..79

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS021928	MS021928	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS021928.1-cds	MS021928.1-cds-scaffold110:233084..233188	CDS
MS021928.1-cds	MS021928.1-cds-scaffold110:235074..235208	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS021928.1	MS021928.1-protein	polypeptide