MS021691.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS021691.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Tify domain-containing protein
Location	scaffold348: 345605 .. 345712 (-)
Sequence length	108
RNA-Seq Expression	MS021691.1
Synteny	MS021691.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGAATGCTTCGAAGCCTCCGGGTCCGATGGCGCCGCTGACGATCTTCTATGCGGGATCAGTGTGTGTTTATAATGATATATCTCCTGAGAAGGTATCTGTGCTTTTG

mRNA sequence

AGGAATGCTTCGAAGCCTCCGGGTCCGATGGCGCCGCTGACGATCTTCTATGCGGGATCAGTGTGTGTTTATAATGATATATCTCCTGAGAAGGTATCTGTGCTTTTG

Coding sequence (CDS)

AGGAATGCTTCGAAGCCTCCGGGTCCGATGGCGCCGCTGACGATCTTCTATGCGGGATCAGTGTGTGTTTATAATGATATATCTCCTGAGAAGGTATCTGTGCTTTTG

Protein sequence

RNASKPPGPMAPLTIFYAGSVCVYNDISPEKVSVLL

Homology

[Close]

BLAST of MS021691.1 vs. NCBI nr
Match: XP_022137341.1 (protein TIFY 6B [Momordica charantia] >XP_022137343.1 protein TIFY 6B [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-09
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 1   RNASKPPGPMAPLTIFYAGSVCVYNDISPEKVSVLL 37
           RNASKPPGPMAPLTIFYAGSVCVYNDISPEK   ++
Sbjct: 162 RNASKPPGPMAPLTIFYAGSVCVYNDISPEKAQAIM 197

[Close]

BLAST of MS021691.1 vs. NCBI nr
Match: XP_004137510.1 (protein TIFY 6B isoform X1 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 3.2e-07
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   RNASKPPGPMAPLTIFYAGSVCVYNDISPEKVSVLL 37
           RN SKPPG MA LTIFYAGSVCVYNDISPEK   ++
Sbjct: 184 RNVSKPPGSMAQLTIFYAGSVCVYNDISPEKAQAVM 219

[Close]

BLAST of MS021691.1 vs. NCBI nr
Match: XP_011650896.1 (protein TIFY 6B isoform X2 [Cucumis sativus] >KAE8652561.1 hypothetical protein Csa_014169 [Cucumis sativus])

HSP 1 Score: 63.9 bits (154), Expect = 3.2e-07
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   RNASKPPGPMAPLTIFYAGSVCVYNDISPEKVSVLL 37
           RN SKPPG MA LTIFYAGSVCVYNDISPEK   ++
Sbjct: 183 RNVSKPPGSMAQLTIFYAGSVCVYNDISPEKAQAVM 218

[Close]

BLAST of MS021691.1 vs. NCBI nr
Match: XP_023519147.1 (protein TIFY 6B-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 63.5 bits (153), Expect = 4.2e-07
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   RNASKPPGPMAPLTIFYAGSVCVYNDISPEKVSVLL 37
           RNAS PPG MA LTIFYAGSVCVYNDISPEK   ++
Sbjct: 131 RNASMPPGSMAQLTIFYAGSVCVYNDISPEKAQAIM 166

[Close]

BLAST of MS021691.1 vs. NCBI nr
Match: XP_022923650.1 (protein TIFY 6B-like [Cucurbita moschata])

HSP 1 Score: 63.5 bits (153), Expect = 4.2e-07
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   RNASKPPGPMAPLTIFYAGSVCVYNDISPEKVSVLL 37
           RNAS PPG MA LTIFYAGSVCVYNDISPEK   ++
Sbjct: 131 RNASMPPGSMAQLTIFYAGSVCVYNDISPEKAQAIM 166

[Close]

BLAST of MS021691.1 vs. ExPASy Swiss-Prot
Match: Q9LVI4 (Protein TIFY 6B OS=Arabidopsis thaliana OX=3702 GN=TIFY6B PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.3e-07
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1   RNASKPPGPMAPLTIFYAGSVCVYNDISPEKVSVLL 37
           R++SKP G  A LTIFYAGSVCVY+DISPEK   ++
Sbjct: 167 RSSSKPIGSPAQLTIFYAGSVCVYDDISPEKAKAIM 202

[Close]

BLAST of MS021691.1 vs. ExPASy Swiss-Prot
Match: Q58G47 (Protein TIFY 6A OS=Arabidopsis thaliana OX=3702 GN=TIFY6A PE=1 SV=1)

HSP 1 Score: 43.5 bits (101), Expect = 5.8e-04
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 0


Query: 1   RNASKPPGPMAPLTIFYAGSVCVYNDISPEKVSVLL 37
           R++SKP  P   LTIFYAGSV VY DI+PEK   ++
Sbjct: 138 RSSSKPLPPQ--LTIFYAGSVLVYQDIAPEKAQAIM 171

[Close]

BLAST of MS021691.1 vs. ExPASy TrEMBL
Match: A0A6J1C6A9 (protein TIFY 6B OS=Momordica charantia OX=3673 GN=LOC111008823 PE=3 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.7e-10
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 0


Query: 1   RNASKPPGPMAPLTIFYAGSVCVYNDISPEKVSVLL 37
           RNASKPPGPMAPLTIFYAGSVCVYNDISPEK   ++
Sbjct: 162 RNASKPPGPMAPLTIFYAGSVCVYNDISPEKAQAIM 197

[Close]

BLAST of MS021691.1 vs. ExPASy TrEMBL
Match: A0A0A0LQI7 (Tify domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042920 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.5e-07
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   RNASKPPGPMAPLTIFYAGSVCVYNDISPEKVSVLL 37
           RN SKPPG MA LTIFYAGSVCVYNDISPEK   ++
Sbjct: 184 RNVSKPPGSMAQLTIFYAGSVCVYNDISPEKAQAVM 219

[Close]

BLAST of MS021691.1 vs. ExPASy TrEMBL
Match: A0A6J1ECG3 (protein TIFY 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111431299 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.0e-07
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   RNASKPPGPMAPLTIFYAGSVCVYNDISPEKVSVLL 37
           RNAS PPG MA LTIFYAGSVCVYNDISPEK   ++
Sbjct: 131 RNASMPPGSMAQLTIFYAGSVCVYNDISPEKAQAIM 166

[Close]

BLAST of MS021691.1 vs. ExPASy TrEMBL
Match: A0A5D3BID5 (Protein TIFY 6B-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002470 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   RNASKPPGPMAPLTIFYAGSVCVYNDISPEKVSVLL 37
           RN SKPPG M+ LTIFYAGSVCVYNDISPEK   ++
Sbjct: 151 RNVSKPPGSMSQLTIFYAGSVCVYNDISPEKAQAVM 186

[Close]

BLAST of MS021691.1 vs. ExPASy TrEMBL
Match: A0A1S3CQH5 (protein TIFY 6B-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503612 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.4e-07
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 1   RNASKPPGPMAPLTIFYAGSVCVYNDISPEKVSVLL 37
           RN SKPPG M+ LTIFYAGSVCVYNDISPEK   ++
Sbjct: 151 RNVSKPPGSMSQLTIFYAGSVCVYNDISPEKAQAVM 186

[Close]

BLAST of MS021691.1 vs. TAIR 10
Match: AT3G17860.1 (jasmonate-zim-domain protein 3 )

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-08
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1   RNASKPPGPMAPLTIFYAGSVCVYNDISPEKVSVLL 37
           R++SKP G  A LTIFYAGSVCVY+DISPEK   ++
Sbjct: 167 RSSSKPIGSPAQLTIFYAGSVCVYDDISPEKAKAIM 202

[Close]

BLAST of MS021691.1 vs. TAIR 10
Match: AT3G17860.2 (jasmonate-zim-domain protein 3 )

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-08
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1   RNASKPPGPMAPLTIFYAGSVCVYNDISPEKVSVLL 37
           R++SKP G  A LTIFYAGSVCVY+DISPEK   ++
Sbjct: 154 RSSSKPIGSPAQLTIFYAGSVCVYDDISPEKAKAIM 189

[Close]

BLAST of MS021691.1 vs. TAIR 10
Match: AT3G17860.3 (jasmonate-zim-domain protein 3 )

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-08
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 0


Query: 1   RNASKPPGPMAPLTIFYAGSVCVYNDISPEKVSVLL 37
           R++SKP G  A LTIFYAGSVCVY+DISPEK   ++
Sbjct: 134 RSSSKPIGSPAQLTIFYAGSVCVYDDISPEKAKAIM 169

[Close]

BLAST of MS021691.1 vs. TAIR 10
Match: AT1G48500.1 (jasmonate-zim-domain protein 4 )

HSP 1 Score: 43.5 bits (101), Expect = 4.2e-05
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 0


Query: 1   RNASKPPGPMAPLTIFYAGSVCVYNDISPEKVSVLL 37
           R++SKP  P   LTIFYAGSV VY DI+PEK   ++
Sbjct: 138 RSSSKPLPPQ--LTIFYAGSVLVYQDIAPEKAQAIM 171

[Close]

BLAST of MS021691.1 vs. TAIR 10
Match: AT1G48500.2 (jasmonate-zim-domain protein 4 )

HSP 1 Score: 43.5 bits (101), Expect = 4.2e-05
Identity = 21/36 (58.33%), Postives = 26/36 (72.22%), Query Frame = 0


Query: 1   RNASKPPGPMAPLTIFYAGSVCVYNDISPEKVSVLL 37
           R++SKP  P   LTIFYAGSV VY DI+PEK   ++
Sbjct: 138 RSSSKPLPPQ--LTIFYAGSVLVYQDIAPEKAQAIM 171

The following BLAST results are available for this feature:

BLAST of MS021691.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137341.1	1.2e-09	86.11	protein TIFY 6B [Momordica charantia] >XP_022137343.1 protein TIFY 6B [Momordica...	[more]
XP_004137510.1	3.2e-07	77.78	protein TIFY 6B isoform X1 [Cucumis sativus]	[more]
XP_011650896.1	3.2e-07	77.78	protein TIFY 6B isoform X2 [Cucumis sativus] >KAE8652561.1 hypothetical protein ...	[more]
XP_023519147.1	4.2e-07	77.78	protein TIFY 6B-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022923650.1	4.2e-07	77.78	protein TIFY 6B-like [Cucurbita moschata]	[more]

BLAST of MS021691.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVI4	3.3e-07	66.67	Protein TIFY 6B OS=Arabidopsis thaliana OX=3702 GN=TIFY6B PE=1 SV=1	[more]
Q58G47	5.8e-04	58.33	Protein TIFY 6A OS=Arabidopsis thaliana OX=3702 GN=TIFY6A PE=1 SV=1	[more]

BLAST of MS021691.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6A9	5.7e-10	86.11	protein TIFY 6B OS=Momordica charantia OX=3673 GN=LOC111008823 PE=3 SV=1	[more]
A0A0A0LQI7	1.5e-07	77.78	Tify domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G042920 PE=3 S...	[more]
A0A6J1ECG3	2.0e-07	77.78	protein TIFY 6B-like OS=Cucurbita moschata OX=3662 GN=LOC111431299 PE=3 SV=1	[more]
A0A5D3BID5	3.4e-07	75.00	Protein TIFY 6B-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3CQH5	3.4e-07	75.00	protein TIFY 6B-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503612 PE=3 SV=...	[more]

BLAST of MS021691.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G17860.1	2.4e-08	66.67	jasmonate-zim-domain protein 3	[more]
AT3G17860.2	2.4e-08	66.67	jasmonate-zim-domain protein 3	[more]
AT3G17860.3	2.4e-08	66.67	jasmonate-zim-domain protein 3	[more]
AT1G48500.1	4.2e-05	58.33	jasmonate-zim-domain protein 4	[more]
AT1G48500.2	4.2e-05	58.33	jasmonate-zim-domain protein 4	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010399	Tify domain	SMART	SM00979	tify_2	coord: 6..36 e-value: 1.9E-5 score: 34.1
IPR010399	Tify domain	PFAM	PF06200	tify	coord: 11..34 e-value: 4.9E-12 score: 44.9
IPR010399	Tify domain	PROSITE	PS51320	TIFY	coord: 6..36 score: 13.625796

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS021691	MS021691	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS021691.1-cds	MS021691.1-cds-scaffold348:345605..345712	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS021691.1	MS021691.1-protein	polypeptide