MS021668.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS021668.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	pre-mRNA-splicing factor SPF27 homolog
Location	scaffold348: 199628 .. 202999 (-)
Sequence length	768
RNA-Seq Expression	MS021668.1
Synteny	MS021668.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTAACAGCAATAACGGAGACATCCTAATGCTCGAAGCTCCACCACAGCCATCTCAACCAACTTGGCATGTTGCTGCAGATGCGGAGGTAATCGACGCCTTGCCCTACATCGACGACGACTATGCCGATCCAAGGGTCAAAGCAGAGGTCGACCGCTTAGTGGAGGAAGAGATGCGGCGTAGCTTCAAGAGACCCGCCGACTTTCTCAAAGACTTGCCTCCTGTTCCCAAGGTCAAATTCGAGGTATGTTAGGTTTCAATTTCTCTTCCCGCCTGAGTTTTCCTCTAGGTTCTGCACTTCCTCATCCCCTTTCTTCCGTAGGTCTTTATGGGCGCAAGAACAGATTATTTTTCTCTCTAAATATAGTTGCTGGACAGTTAGTAATGCCGAATTTGGAAACGTTCAGATGCTTCATCTGCTGGTTCTGCTCCGTAACATACTCTATTACGTTTACTCGAAAACGAACTCAAATAAATTAAATGTAAATTAATCGATGAACAAGAATATCGGATGTTGCTGATCAGCGAGAAACAGTGTTCTTTATTTTTCTATGAAGTGTGAACCGATGACTGTAGGACGGGCTGCTTTCTCTTGCATACGCTCTTTTACCATTACATAGCATAGACTTTGAAAATTCGACTAAATGTGATAACATTAGTGATACTCTACTCAACTGATGAAGTTTGAACTCAGGATCACCCAATGCTTGCTAGAGAGTATGAACGTGTAAGAGCTGGGAGGCCTCCAGTGCCTCTCGATGTTGCAAGATATAAATTAGAGACACCGCCTCCAAATAAAAAGAACGACGAAACTGCTTGGAAGCAGACACTTCAGAGAGCTCAATGCTTACTACGTCATCAAGTGCTGAGGTGAAGTTTTAATATGTTTTTATTGTTCTAGGAATTTAAGACTTGCATTTGAAAAACGTTATTTTATGGAGAACAGTTAGAGTTGCCTACTTGAACTCAACGACGTTTTTTAATATTTGTGATACCAAGTTAATATTTTCGCAGGGGACTTTAAGTTATTAATTTACATTTGGCTCAAAACTCTATTGACATAGACCACTTTAAGTACTTGATATTATTTGACCCTAAAAATTACTTGCTGCATACAATTCTTCCTCATTCATCAAATCTCTCACTTTTCTTGGTTGTAGTAGGTTTTTTAAAACTAGTTTGTGTACCCATGGGTCATGCTTATGAGTGATTTAACAATTTTTGTAAGAAAAAACAGAAAGCAGAAGATTACTTGCCCCACCATGAAACAAAACATCAGGGACGTTTTAAAGATTTCATCAGAAAACAATAAGAATATGAAAATATAACAATTTAACTGCAGGCTGGAAAATTTGGAACTGATGTCAAAATATGGCCCTGATATCTGGAAGCAACACAACAAACAGTTGGAAGCACTTTTATCGAGGTTTGTTATTATATTTTGTTTTAATGTTCTATGTTTTATGTTATCTATTTATGTTTTTATGTTAATTGATCATGATTCCGATGTTCAATACTTTGGTTTATCTCCTTCTATAGTGTAAATTGTCCTGTTTCTTTTATATGAAAAATTGTCATATGGAGAAACAATTATTATTTGTTGGTTATGTGCATCTCTCCCTCTCTAAAATAATGTTTAGTTTTTTAGACAGTAACTATATTCTTCTCTGTTTGAATTGACTTGCTGATCACAAATTATGAGGTGTGGACTTGTATGTTTTTAGCTCCTTACCTCCGCTCGTTAGTGAATTAAGGCATAGGGTGACACTCTCCCTGTGCAATGCAATCCTTACTTTTGGCTACCTAAGTCAGCAGAAACGAAACATTTACATATGTTTACTGCCTATGATTCTTTCTTTGATGAATGCCTAGGTGCTCTTTTCAGGTTTGCATCCATGCTTGAAGCTAGAACTCATATTTGAGTTGGCGGGTTAGCACTTCACTTCACATTATAATGATTTAAAAAAACTTCAACTAATTCAATGAACACTTCCTCTGTGGCATGAAAATTTGGTTCAACGAGGATTTGTTGTTCATCTACCTGCATTTTAAATGCATTTGCTTGCCATTTTTTTAAATGATATCCTGGAAAATTAGATGCAATGCGAGAAAAGATGTATTTGACTTTCAACATTAGGCTGGATTGATAAACTTGATAAAGCTTTGATTGCTATACATGGTCGCAATCATTGGACCTATTTTTTCAGTGGTCATTTTTCAACTGAAGAGAATAACTTGTTAATTGAGACTGAGGATGGGCAATGATAAAACATAGATAAGAATATGCAGAGCGTGGGAAACTCTTGATGGTAAGAAAAAAACCCTGAGGCTCATGAAGAGATATTCACGGTTTTCGAGTATCGTTATAATTTTTAGGACAACTACAGAAACATCAGTAGGAACCATAAAGATATATAGAAAATATCTGACCGGGTTCACATTTGACTGAAGGCCGCCCAGAAAACTCTCATAATTTGTCTTTGACACATAAGTTGCACTGCCAGCTTTTGGTGCCAGTCCAAATATAATTGGGTTGGTGGCACTCTGCATTCTTCATTTAATTGACCGAGTTTCCACCTATTTTCACTTTCAAGGAATAACAGATATTATGGATTTTGAGTCCTGTTCTGCATATTACTTTTTGTTAGAGCTTGTCATTTTTCTATCAATAAAGGATGTTTAACATTGTTCAAGGGTTGATGCTGGCATGCTAATGTGATGTGACAAAGTACTGCTACATAAATGTCAGTTATAGATTCCTACATTAACTTGAGGCAAAGGCCTGCTGCTATCAAAACTATTGCATTACAGGCATTAGCTTTATGGTACACATAGCCACATTTTTATACATGTCATCTCTGAATGAAGTGAATATGAAAGTACATATGACCAAAGTGACCATACATGATTGTTACTTATATTGTCATGTCATTATCAGAATGCAAAAGTTAGCTCAAGAACAGAATGAGAAGATTGAAAAGGTGAACCGTGAAAGGAAATTTCATCAAGTAAGTAGCATCCCTGTAATTCATATTACTATTGGCTAGAGTTGAATTCCTCGGAATAGTTGGCTGATTATTTATGCAATGATTAGCAAAACGCTGCATATGAGCTTCATGCTTTGTCCACGCAATGGAAGGATCTTTGCCACAAAAATATGGAAATCCAAGTGGCATGCTCTCAAATCGAGGGTCAAATCCAGGAACTAAGGAGAGAGGCAGCAGAAAAGTAATCTTGCCTTCTCTATTTGATCTATTTTTGTCCTACACATGTTTGGCATATTTAGAACTGATCTGTGGGTTATGTTTTCAGTGGCTGGAATTTGGAAGCCAATATAGAGAATGGTTCTGTTTCTCTTCCAGTGTCA

mRNA sequence

ATGGCGACTAACAGCAATAACGGAGACATCCTAATGCTCGAAGCTCCACCACAGCCATCTCAACCAACTTGGCATGTTGCTGCAGATGCGGAGGTAATCGACGCCTTGCCCTACATCGACGACGACTATGCCGATCCAAGGGTCAAAGCAGAGGTCGACCGCTTAGTGGAGGAAGAGATGCGGCGTAGCTTCAAGAGACCCGCCGACTTTCTCAAAGACTTGCCTCCTGTTCCCAAGGTCAAATTCGAGGATCACCCAATGCTTGCTAGAGAGTATGAACGTGTAAGAGCTGGGAGGCCTCCAGTGCCTCTCGATGTTGCAAGATATAAATTAGAGACACCGCCTCCAAATAAAAAGAACGACGAAACTGCTTGGAAGCAGACACTTCAGAGAGCTCAATGCTTACTACGTCATCAAGTGCTGAGGCTGGAAAATTTGGAACTGATGTCAAAATATGGCCCTGATATCTGGAAGCAACACAACAAACAGTTGGAAGCACTTTTATCGAGAATGCAAAAGTTAGCTCAAGAACAGAATGAGAAGATTGAAAAGGTGAACCGTGAAAGGAAATTTCATCAACAAAACGCTGCATATGAGCTTCATGCTTTGTCCACGCAATGGAAGGATCTTTGCCACAAAAATATGGAAATCCAAGTGGCATGCTCTCAAATCGAGGGTCAAATCCAGGAACTAAGGAGAGAGGCAGCAGAAAATGGCTGGAATTTGGAAGCCAATATAGAGAATGGTTCTGTTTCTCTTCCAGTGTCA

Coding sequence (CDS)

ATGGCGACTAACAGCAATAACGGAGACATCCTAATGCTCGAAGCTCCACCACAGCCATCTCAACCAACTTGGCATGTTGCTGCAGATGCGGAGGTAATCGACGCCTTGCCCTACATCGACGACGACTATGCCGATCCAAGGGTCAAAGCAGAGGTCGACCGCTTAGTGGAGGAAGAGATGCGGCGTAGCTTCAAGAGACCCGCCGACTTTCTCAAAGACTTGCCTCCTGTTCCCAAGGTCAAATTCGAGGATCACCCAATGCTTGCTAGAGAGTATGAACGTGTAAGAGCTGGGAGGCCTCCAGTGCCTCTCGATGTTGCAAGATATAAATTAGAGACACCGCCTCCAAATAAAAAGAACGACGAAACTGCTTGGAAGCAGACACTTCAGAGAGCTCAATGCTTACTACGTCATCAAGTGCTGAGGCTGGAAAATTTGGAACTGATGTCAAAATATGGCCCTGATATCTGGAAGCAACACAACAAACAGTTGGAAGCACTTTTATCGAGAATGCAAAAGTTAGCTCAAGAACAGAATGAGAAGATTGAAAAGGTGAACCGTGAAAGGAAATTTCATCAACAAAACGCTGCATATGAGCTTCATGCTTTGTCCACGCAATGGAAGGATCTTTGCCACAAAAATATGGAAATCCAAGTGGCATGCTCTCAAATCGAGGGTCAAATCCAGGAACTAAGGAGAGAGGCAGCAGAAAATGGCTGGAATTTGGAAGCCAATATAGAGAATGGTTCTGTTTCTCTTCCAGTGTCA

Protein sequence

MATNSNNGDILMLEAPPQPSQPTWHVAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSFKRPADFLKDLPPVPKVKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKNDETAWKQTLQRAQCLLRHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALSTQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGWNLEANIENGSVSLPVS

Homology

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BLAST of MS021668.1 vs. NCBI nr
Match: XP_022137683.1 (pre-mRNA-splicing factor SPF27 homolog [Momordica charantia])

HSP 1 Score: 512.7 bits (1319), Expect = 1.8e-141
Identity = 255/256 (99.61%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MATNSNNGDILMLEAPPQPSQPTWHVAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MATNSNNGDILMLEAPPQPSQPTWHVAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MATNSNNGDILMLEAPPQPSQPTWHVAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSFKRPADFLKDLPPVPKVKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRSFKRPADFLKDLPPVPKVKFEDHP+LAREYERVRAGRPPVPLDVARYKLETPPPNKKN
Sbjct: 61  RRSFKRPADFLKDLPPVPKVKFEDHPLLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLRHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQRAQCLLRHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQRAQCLLRHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGW 240

Query: 241 NLEANIENGSVSLPVS 257
           NLEANIENGSVSLPVS
Sbjct: 241 NLEANIENGSVSLPVS 256

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BLAST of MS021668.1 vs. NCBI nr
Match: XP_008462680.1 (PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis melo])

HSP 1 Score: 485.0 bits (1247), Expect = 4.1e-133
Identity = 239/256 (93.36%), Postives = 248/256 (96.88%), Query Frame = 0


Query: 1   MATNSNNGDILMLEAPPQPSQPTWHVAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA N+NNGDILMLEAPPQPSQP W V+ADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSFKRPADFLKDLPPVPKVKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRS KRPADFLKDLPP+PK+KFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKLKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLRHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQ+AQCLLRHQVLRLENL+LMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWK+LC KNMEIQVAC Q+EGQIQELRREAAE GW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240

Query: 241 NLEANIENGSVSLPVS 257
           NLE N+ENGSVSLPVS
Sbjct: 241 NLEVNVENGSVSLPVS 256

[Close]

BLAST of MS021668.1 vs. NCBI nr
Match: XP_004137495.1 (pre-mRNA-splicing factor SPF27 homolog [Cucumis sativus] >KGN64160.1 hypothetical protein Csa_014348 [Cucumis sativus])

HSP 1 Score: 484.2 bits (1245), Expect = 7.0e-133
Identity = 239/256 (93.36%), Postives = 247/256 (96.48%), Query Frame = 0


Query: 1   MATNSNNGDILMLEAPPQPSQPTWHVAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA N+NNGDILMLEAPPQPSQP W V+ADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSFKRPADFLKDLPPVPKVKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRS KRPADFLKDLPP+PK KFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLRHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQ+AQCLLRHQVLRLENL+LMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWK+LC KNMEIQVAC Q+EGQIQELRREAAE GW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240

Query: 241 NLEANIENGSVSLPVS 257
           NLE N+ENGSVSLPVS
Sbjct: 241 NLEVNVENGSVSLPVS 256

[Close]

BLAST of MS021668.1 vs. NCBI nr
Match: XP_038893573.1 (pre-mRNA-splicing factor SPF27 homolog [Benincasa hispida])

HSP 1 Score: 481.9 bits (1239), Expect = 3.5e-132
Identity = 238/256 (92.97%), Postives = 246/256 (96.09%), Query Frame = 0


Query: 1   MATNSNNGDILMLEAPPQPSQPTWHVAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MATN+ NGDILMLEAPPQPSQP W VAADAEV+DALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MATNNINGDILMLEAPPQPSQPAWRVAADAEVVDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSFKRPADFLKDLPPVPKVKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRS KRPADFLKDLPPVPK KFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPVPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLRHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQ+AQCLLRHQVLRLENL+LMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWK+LC KNMEIQVAC Q+EGQI+ELRREA E GW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIEELRREATEKGW 240

Query: 241 NLEANIENGSVSLPVS 257
           NLE N+ENGSVSLPVS
Sbjct: 241 NLEVNVENGSVSLPVS 256

[Close]

BLAST of MS021668.1 vs. NCBI nr
Match: KAG6584331.1 (Pre-mRNA-splicing factor SPF27-like protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019921.1 Pre-mRNA-splicing factor SPF27-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 480.7 bits (1236), Expect = 7.8e-132
Identity = 238/256 (92.97%), Postives = 246/256 (96.09%), Query Frame = 0


Query: 1   MATNSNNGDILMLEAPPQPSQPTWHVAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA N+N+GDILMLEAPPQPSQP W V+ADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSFKRPADFLKDLPPVPKVKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRS KRPADFLKDLPP+PK KFEDHPMLAREYERVRAGRPP+PLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLRHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQRAQCLL+HQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWK+LC KNMEIQVACSQIEGQIQELR EAAE GW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW 240

Query: 241 NLEANIENGSVSLPVS 257
           NLE N+ENGSVS PVS
Sbjct: 241 NLEVNVENGSVSFPVS 256

[Close]

BLAST of MS021668.1 vs. ExPASy Swiss-Prot
Match: Q949S9 (Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana OX=3702 GN=MOS4 PE=1 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 5.5e-88
Identity = 160/245 (65.31%), Postives = 203/245 (82.86%), Query Frame = 0


Query: 5   SNNGDILMLEAPPQPSQPTWHVAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSF 64
           +NNGD+LMLEA P+ ++P W  AA+AEVIDALPYIDDDY +P +K+EVDRLVEEEMRRS 
Sbjct: 3   TNNGDVLMLEATPEAARP-WASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSS 62

Query: 65  KRPADFLKDLPPVPKVKFEDHPMLAREYERVRAGRPPVPLDV-ARYKLETPPPNKKNDET 124
           K+PADFLKDLPP+PK  F++ P+L +EYERVRAG+PPV +D  +RYKLE PP NK+ND+ 
Sbjct: 63  KKPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDA 122

Query: 125 AWKQTLQRAQCLLRHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIE 184
           AWKQ LQ+ Q  L+ +++ LENLELMSK GP++W+Q+N +LE  L+RMQ+LAQEQNE+IE
Sbjct: 123 AWKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIE 182

Query: 185 KVNRERKFHQQNAAYELHALSTQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGWNLE 244
           KVNRERK+HQQ  +YEL+ALS +W+ LC KNMEIQ AC+ +E QI   ++EAAE GWNLE
Sbjct: 183 KVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWNLE 242

Query: 245 ANIEN 249
             +EN
Sbjct: 243 EKLEN 246

[Close]

BLAST of MS021668.1 vs. ExPASy Swiss-Prot
Match: Q6PBE2 (Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis OX=8364 GN=bcas2 PE=2 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.9e-28
Identity = 79/218 (36.24%), Postives = 123/218 (56.42%), Query Frame = 0


Query: 26  VAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSFKRPADFLKDLPPVPKVKFEDH 85
           VA D  V+DALPY D  Y    V+     LVEEE RR ++   ++L  LP      FE  
Sbjct: 7   VAGDV-VVDALPYFDQGYDAQGVREAAAALVEEETRR-YRPTKNYLSYLPTPDYSAFETE 66

Query: 86  PMLAREYERVRAGRPPVPLDVARYKLETPPPNKKNDETAWKQTLQRAQCLLRHQVLRLEN 145
            ++  E+ER+ + +P   L + RY+L  P   ++ND TAW++ +  +   L HQ +R+EN
Sbjct: 67  -IMRNEFERLSSRQPLELLSMKRYELPAPLSGQRNDITAWQECVNNSMAQLEHQAVRIEN 126

Query: 146 LELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALST 205
           LELMS++G + WK +N+ L  ++   QK  Q+  +KI+ +N +RK  Q  A   L  + +
Sbjct: 127 LELMSQHGCNAWKVYNENLLHMIDCAQKDLQKLRKKIQDLNWQRKNSQLTAGARLREMES 186

Query: 206 QWKDLCHKNMEIQVACSQIEGQIQELRREAAENGWNLE 244
            W  L  KN EI+ A  Q+E ++ +L+  + EN  N+E
Sbjct: 187 TWVSLVSKNYEIERAIVQMENEVYQLKERSGENKENIE 221

[Close]

BLAST of MS021668.1 vs. ExPASy Swiss-Prot
Match: O75934 (Pre-mRNA-splicing factor SPF27 OS=Homo sapiens OX=9606 GN=BCAS2 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.0e-27
Identity = 78/223 (34.98%), Postives = 122/223 (54.71%), Query Frame = 0


Query: 26  VAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSFKRPADFLKDLPPVPKVKFEDH 85
           + A   V+DALPY D  Y  P V+     LVEEE RR ++   ++L  L       FE  
Sbjct: 6   LVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRR-YRPTKNYLSYLTAPDYSAFET- 65

Query: 86  PMLAREYERVRAGRPPVPLDVARYKLETPPPNKKNDETAWKQTLQRAQCLLRHQVLRLEN 145
            ++  E+ER+ A +P   L + RY+L  P   +KND TAW++ +  +   L HQ +R+EN
Sbjct: 66  DIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIEN 125

Query: 146 LELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALST 205
           LELMS++G + WK +N+ L  ++   QK  Q+  + I+ +N +RK  Q  A  +L  + +
Sbjct: 126 LELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMES 185

Query: 206 QWKDLCHKNMEIQVACSQIEGQIQELRREAAENGWNLEANIEN 249
            W  L  KN EI+    Q+E +I +++++        EAN EN
Sbjct: 186 NWVSLVSKNYEIERTIVQLENEIYQIKQQHG------EANKEN 220

[Close]

BLAST of MS021668.1 vs. ExPASy Swiss-Prot
Match: Q9D287 (Pre-mRNA-splicing factor SPF27 OS=Mus musculus OX=10090 GN=Bcas2 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.0e-27
Identity = 78/223 (34.98%), Postives = 122/223 (54.71%), Query Frame = 0


Query: 26  VAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSFKRPADFLKDLPPVPKVKFEDH 85
           + A   V+DALPY D  Y  P V+     LVEEE RR ++   ++L  L       FE  
Sbjct: 6   LVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRR-YRPTKNYLSYLTAPDYSAFET- 65

Query: 86  PMLAREYERVRAGRPPVPLDVARYKLETPPPNKKNDETAWKQTLQRAQCLLRHQVLRLEN 145
            ++  E+ER+ A +P   L + RY+L  P   +KND TAW++ +  +   L HQ +R+EN
Sbjct: 66  DIMRNEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIEN 125

Query: 146 LELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALST 205
           LELMS++G + WK +N+ L  ++   QK  Q+  + I+ +N +RK  Q  A  +L  + +
Sbjct: 126 LELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMES 185

Query: 206 QWKDLCHKNMEIQVACSQIEGQIQELRREAAENGWNLEANIEN 249
            W  L  KN EI+    Q+E +I +++++        EAN EN
Sbjct: 186 NWVSLVSKNYEIERTIVQLENEIYQIKQQHG------EANKEN 220

[Close]

BLAST of MS021668.1 vs. ExPASy Swiss-Prot
Match: Q5RAX7 (Pre-mRNA-splicing factor SPF27 OS=Pongo abelii OX=9601 GN=BCAS2 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.0e-27
Identity = 80/224 (35.71%), Postives = 123/224 (54.91%), Query Frame = 0


Query: 26  VAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSFKRPADFLKDLPPVPKVKFEDH 85
           + A   V+DALPY D  Y  P V+     LVEEE RR ++   ++L  L       FE  
Sbjct: 6   LVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRR-YRPTKNYLSYLTAPDYSAFET- 65

Query: 86  PMLAREYERVRAGRPPVPLDVARYKLETPPP-NKKNDETAWKQTLQRAQCLLRHQVLRLE 145
            ++  E+ER+ A +P   L + RY+L  PP   KKND TAW++ +  +   L HQ +R+E
Sbjct: 66  DIMRNEFERLAARQPIELLSMKRYELPAPPSGQKKNDITAWQECVNNSMAQLEHQAVRIE 125

Query: 146 NLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIEKVNRERKFHQQNAAYELHALS 205
           NLELMS++G + WK +N+ L  ++   QK  Q+  + I+ +N +RK  Q  A  +L  + 
Sbjct: 126 NLELMSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREME 185

Query: 206 TQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGWNLEANIEN 249
           + W  L  KN EI+    Q+E +I +++++        EAN EN
Sbjct: 186 SNWVSLVSKNYEIERTIVQLENEIYQIKQQHG------EANKEN 221

[Close]

BLAST of MS021668.1 vs. ExPASy TrEMBL
Match: A0A6J1CB04 (pre-mRNA-splicing factor SPF27 homolog OS=Momordica charantia OX=3673 GN=LOC111009059 PE=4 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 8.9e-142
Identity = 255/256 (99.61%), Postives = 256/256 (100.00%), Query Frame = 0


Query: 1   MATNSNNGDILMLEAPPQPSQPTWHVAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MATNSNNGDILMLEAPPQPSQPTWHVAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MATNSNNGDILMLEAPPQPSQPTWHVAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSFKRPADFLKDLPPVPKVKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRSFKRPADFLKDLPPVPKVKFEDHP+LAREYERVRAGRPPVPLDVARYKLETPPPNKKN
Sbjct: 61  RRSFKRPADFLKDLPPVPKVKFEDHPLLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLRHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQRAQCLLRHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQRAQCLLRHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGW 240

Query: 241 NLEANIENGSVSLPVS 257
           NLEANIENGSVSLPVS
Sbjct: 241 NLEANIENGSVSLPVS 256

[Close]

BLAST of MS021668.1 vs. ExPASy TrEMBL
Match: A0A1S3CHH7 (pre-mRNA-splicing factor SPF27 homolog OS=Cucumis melo OX=3656 GN=LOC103500959 PE=4 SV=1)

HSP 1 Score: 485.0 bits (1247), Expect = 2.0e-133
Identity = 239/256 (93.36%), Postives = 248/256 (96.88%), Query Frame = 0


Query: 1   MATNSNNGDILMLEAPPQPSQPTWHVAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA N+NNGDILMLEAPPQPSQP W V+ADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSFKRPADFLKDLPPVPKVKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRS KRPADFLKDLPP+PK+KFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKLKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLRHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQ+AQCLLRHQVLRLENL+LMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWK+LC KNMEIQVAC Q+EGQIQELRREAAE GW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240

Query: 241 NLEANIENGSVSLPVS 257
           NLE N+ENGSVSLPVS
Sbjct: 241 NLEVNVENGSVSLPVS 256

[Close]

BLAST of MS021668.1 vs. ExPASy TrEMBL
Match: A0A0A0LQG2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042680 PE=4 SV=1)

HSP 1 Score: 484.2 bits (1245), Expect = 3.4e-133
Identity = 239/256 (93.36%), Postives = 247/256 (96.48%), Query Frame = 0


Query: 1   MATNSNNGDILMLEAPPQPSQPTWHVAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA N+NNGDILMLEAPPQPSQP W V+ADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAANNNNGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSFKRPADFLKDLPPVPKVKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRS KRPADFLKDLPP+PK KFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLRHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQ+AQCLLRHQVLRLENL+LMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQKAQCLLRHQVLRLENLDLMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWK+LC KNMEIQVAC Q+EGQIQELRREAAE GW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACFQLEGQIQELRREAAEKGW 240

Query: 241 NLEANIENGSVSLPVS 257
           NLE N+ENGSVSLPVS
Sbjct: 241 NLEVNVENGSVSLPVS 256

[Close]

BLAST of MS021668.1 vs. ExPASy TrEMBL
Match: A0A6J1EDE4 (pre-mRNA-splicing factor SPF27 homolog OS=Cucurbita moschata OX=3662 GN=LOC111431514 PE=4 SV=1)

HSP 1 Score: 478.4 bits (1230), Expect = 1.9e-131
Identity = 237/256 (92.58%), Postives = 245/256 (95.70%), Query Frame = 0


Query: 1   MATNSNNGDILMLEAPPQPSQPTWHVAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA N+N+GDILMLEAPPQPSQP W V+ADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAINNNSGDILMLEAPPQPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSFKRPADFLKDLPPVPKVKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRS KRPADFLKDLPP+PK KFEDHPMLAREYERVRAGRPP+PLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLRHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQRAQCLL+HQVLRLENLELMSKY PDIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYAPDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWK+LC KNMEIQVACSQIEGQIQELR EAAE GW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW 240

Query: 241 NLEANIENGSVSLPVS 257
           NLE N+ENGSVS PVS
Sbjct: 241 NLEVNVENGSVSFPVS 256

[Close]

BLAST of MS021668.1 vs. ExPASy TrEMBL
Match: A0A6J1KLZ4 (pre-mRNA-splicing factor SPF27 homolog OS=Cucurbita maxima OX=3661 GN=LOC111495390 PE=4 SV=1)

HSP 1 Score: 474.9 bits (1221), Expect = 2.1e-130
Identity = 236/256 (92.19%), Postives = 244/256 (95.31%), Query Frame = 0


Query: 1   MATNSNNGDILMLEAPPQPSQPTWHVAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60
           MA N+N+GDILMLEAPP PSQP W V+ADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM
Sbjct: 1   MAINNNSGDILMLEAPPLPSQPAWRVSADAEVIDALPYIDDDYADPRVKAEVDRLVEEEM 60

Query: 61  RRSFKRPADFLKDLPPVPKVKFEDHPMLAREYERVRAGRPPVPLDVARYKLETPPPNKKN 120
           RRS KRPADFLKDLPP+PK KFEDHPMLAREYERVRAGRPP+PLDVARYKLETPPPNKKN
Sbjct: 61  RRSSKRPADFLKDLPPLPKFKFEDHPMLAREYERVRAGRPPMPLDVARYKLETPPPNKKN 120

Query: 121 DETAWKQTLQRAQCLLRHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNE 180
           DETAWKQTLQRAQCLL+HQVLRLENLELMSKYG DIWKQHNKQLEALLSRMQKLAQEQNE
Sbjct: 121 DETAWKQTLQRAQCLLQHQVLRLENLELMSKYGSDIWKQHNKQLEALLSRMQKLAQEQNE 180

Query: 181 KIEKVNRERKFHQQNAAYELHALSTQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGW 240
           KIEKVNRERKFHQQNAAYELHALSTQWK+LC KNMEIQVACSQIEGQIQELR EAAE GW
Sbjct: 181 KIEKVNRERKFHQQNAAYELHALSTQWKELCEKNMEIQVACSQIEGQIQELRSEAAEKGW 240

Query: 241 NLEANIENGSVSLPVS 257
           NLE N+ENGSVS PVS
Sbjct: 241 NLEVNVENGSVSFPVS 256

[Close]

BLAST of MS021668.1 vs. TAIR 10
Match: AT3G18165.1 (modifier of snc1,4 )

HSP 1 Score: 325.5 bits (833), Expect = 3.9e-89
Identity = 160/245 (65.31%), Postives = 203/245 (82.86%), Query Frame = 0


Query: 5   SNNGDILMLEAPPQPSQPTWHVAADAEVIDALPYIDDDYADPRVKAEVDRLVEEEMRRSF 64
           +NNGD+LMLEA P+ ++P W  AA+AEVIDALPYIDDDY +P +K+EVDRLVEEEMRRS 
Sbjct: 3   TNNGDVLMLEATPEAARP-WASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSS 62

Query: 65  KRPADFLKDLPPVPKVKFEDHPMLAREYERVRAGRPPVPLDV-ARYKLETPPPNKKNDET 124
           K+PADFLKDLPP+PK  F++ P+L +EYERVRAG+PPV +D  +RYKLE PP NK+ND+ 
Sbjct: 63  KKPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDA 122

Query: 125 AWKQTLQRAQCLLRHQVLRLENLELMSKYGPDIWKQHNKQLEALLSRMQKLAQEQNEKIE 184
           AWKQ LQ+ Q  L+ +++ LENLELMSK GP++W+Q+N +LE  L+RMQ+LAQEQNE+IE
Sbjct: 123 AWKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIE 182

Query: 185 KVNRERKFHQQNAAYELHALSTQWKDLCHKNMEIQVACSQIEGQIQELRREAAENGWNLE 244
           KVNRERK+HQQ  +YEL+ALS +W+ LC KNMEIQ AC+ +E QI   ++EAAE GWNLE
Sbjct: 183 KVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWNLE 242

Query: 245 ANIEN 249
             +EN
Sbjct: 243 EKLEN 246

The following BLAST results are available for this feature:

BLAST of MS021668.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137683.1	1.8e-141	99.61	pre-mRNA-splicing factor SPF27 homolog [Momordica charantia]	[more]
XP_008462680.1	4.1e-133	93.36	PREDICTED: pre-mRNA-splicing factor SPF27 homolog [Cucumis melo]	[more]
XP_004137495.1	7.0e-133	93.36	pre-mRNA-splicing factor SPF27 homolog [Cucumis sativus] >KGN64160.1 hypothetica...	[more]
XP_038893573.1	3.5e-132	92.97	pre-mRNA-splicing factor SPF27 homolog [Benincasa hispida]	[more]
KAG6584331.1	7.8e-132	92.97	Pre-mRNA-splicing factor SPF27-like protein, partial [Cucurbita argyrosperma sub...	[more]

BLAST of MS021668.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q949S9	5.5e-88	65.31	Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana OX=3702 GN=MOS4 P...	[more]
Q6PBE2	2.9e-28	36.24	Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis OX=8364 GN=bcas2 PE=2 SV=1	[more]
O75934	7.0e-27	34.98	Pre-mRNA-splicing factor SPF27 OS=Homo sapiens OX=9606 GN=BCAS2 PE=1 SV=1	[more]
Q9D287	7.0e-27	34.98	Pre-mRNA-splicing factor SPF27 OS=Mus musculus OX=10090 GN=Bcas2 PE=1 SV=1	[more]
Q5RAX7	7.0e-27	35.71	Pre-mRNA-splicing factor SPF27 OS=Pongo abelii OX=9601 GN=BCAS2 PE=2 SV=1	[more]

BLAST of MS021668.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CB04	8.9e-142	99.61	pre-mRNA-splicing factor SPF27 homolog OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A1S3CHH7	2.0e-133	93.36	pre-mRNA-splicing factor SPF27 homolog OS=Cucumis melo OX=3656 GN=LOC103500959 P...	[more]
A0A0A0LQG2	3.4e-133	93.36	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042680 PE=4 SV=1	[more]
A0A6J1EDE4	1.9e-131	92.58	pre-mRNA-splicing factor SPF27 homolog OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1KLZ4	2.1e-130	92.19	pre-mRNA-splicing factor SPF27 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114953...	[more]

BLAST of MS021668.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18165.1	3.9e-89	65.31	modifier of snc1,4	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 157..195
None	No IPR available	COILS	Coil	Coil	coord: 214..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR13296:SF0	PRE-MRNA-SPLICING FACTOR SPF27	coord: 15..239
IPR008409	Pre-mRNA-splicing factor SPF27	PFAM	PF05700	BCAS2	coord: 31..237 e-value: 4.5E-73 score: 245.3
IPR008409	Pre-mRNA-splicing factor SPF27	PANTHER	PTHR13296	BCAS2 PROTEIN	coord: 15..239

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS021668	MS021668	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS021668.1-cds	MS021668.1-cds-scaffold348:199628..199682	CDS
MS021668.1-cds	MS021668.1-cds-scaffold348:199767..199900	CDS
MS021668.1-cds	MS021668.1-cds-scaffold348:199987..200056	CDS
MS021668.1-cds	MS021668.1-cds-scaffold348:201569..201652	CDS
MS021668.1-cds	MS021668.1-cds-scaffold348:202125..202300	CDS
MS021668.1-cds	MS021668.1-cds-scaffold348:202751..202999	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS021668.1	MS021668.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing