MS021498.1 (mRNA) Bitter gourd (TR) v1

Overview
NameMS021498.1
TypemRNA
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
Locationscaffold208: 116087 .. 116173 (-)
Sequence length87
RNA-Seq ExpressionMS021498.1
SyntenyMS021498.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTCTAGATTGGAATTCTTAAAAGAAGTCTATGGAATTCTATGGGTGTTTGTTCCTATTTTGACTAATGTACTGGGAATCACATTT

mRNA sequence

TTTTCTAGATTGGAATTCTTAAAAGAAGTCTATGGAATTCTATGGGTGTTTGTTCCTATTTTGACTAATGTACTGGGAATCACATTT

Coding sequence (CDS)

TTTTCTAGATTGGAATTCTTAAAAGAAGTCTATGGAATTCTATGGGTGTTTGTTCCTATTTTGACTAATGTACTGGGAATCACATTT

Protein sequence

FSRLEFLKEVYGILWVFVPILTNVLGITF
Homology
BLAST of MS021498.1 vs. NCBI nr
Match: YP_010019789.1 (NADH-plastoquinone oxidoreductase subunit 1 [Primula merrilliana] >QOJ50835.1 NADH-plastoquinone oxidoreductase subunit 1 [Primula merrilliana])

HSP 1 Score: 53.1 bits (126), Expect = 4.5e-04
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 1  FSRLEFLKEVYGILWVFVPILTNVLGIT 29
          FSRLEFLKE+YGI+W+FVPILT VLGIT
Sbjct: 14 FSRLEFLKEIYGIIWLFVPILTTVLGIT 41

BLAST of MS021498.1 vs. NCBI nr
Match: QOJ51088.1 (NADH-plastoquinone oxidoreductase subunit 1 [Primula cicutariifolia])

HSP 1 Score: 53.1 bits (126), Expect = 4.5e-04
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 1  FSRLEFLKEVYGILWVFVPILTNVLGIT 29
          FSRLEFLKE+YGI+W+FVPILT VLGIT
Sbjct: 14 FSRLEFLKEIYGIIWLFVPILTTVLGIT 41

BLAST of MS021498.1 vs. NCBI nr
Match: QJS52316.1 (NADH-plastoquinone oxidoreductase subunit 1 [Indofevillea khasiana])

HSP 1 Score: 53.1 bits (126), Expect = 4.5e-04
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 1  FSRLEFLKEVYGILWVFVPILTNVLGIT 29
          FSRLEFLKEVYGILWV VPILT VLGIT
Sbjct: 14 FSRLEFLKEVYGILWVLVPILTTVLGIT 41

BLAST of MS021498.1 vs. NCBI nr
Match: QZL38650.1 (NADH dehydrogenase subunit A [Citrullus naudinianus])

HSP 1 Score: 53.1 bits (126), Expect = 4.5e-04
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 1  FSRLEFLKEVYGILWVFVPILTNVLGIT 29
          FSRLEFLKEVYGILWV VPILT VLGIT
Sbjct: 14 FSRLEFLKEVYGILWVLVPILTTVLGIT 41

BLAST of MS021498.1 vs. NCBI nr
Match: YP_009751534.1 (NADH dehydrogenase subunit A [Thladiantha dubia] >QIT04015.1 NADH dehydrogenase subunit A [Thladiantha dubia])

HSP 1 Score: 53.1 bits (126), Expect = 4.5e-04
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 1  FSRLEFLKEVYGILWVFVPILTNVLGIT 29
          FSRLEFLKEVYGILWV VPILT VLGIT
Sbjct: 14 FSRLEFLKEVYGILWVLVPILTTVLGIT 41

BLAST of MS021498.1 vs. ExPASy Swiss-Prot
Match: Q2QD36 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhA PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.3e-06
Identity = 25/28 (89.29%), Postives = 25/28 (89.29%), Query Frame = 0

Query: 1  FSRLEFLKEVYGILWVFVPILTNVLGIT 29
          FSRLEFLKE YGILWV VPILT VLGIT
Sbjct: 14 FSRLEFLKEFYGILWVLVPILTTVLGIT 41

BLAST of MS021498.1 vs. ExPASy Swiss-Prot
Match: Q06R75 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Jasminum nudiflorum OX=126431 GN=ndhA PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 1.5e-05
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 0

Query: 1  FSRLEFLKEVYGILWVFVPILTNVLGIT 29
          FSRLEFLKEVYG +WV +PILT VLGIT
Sbjct: 15 FSRLEFLKEVYGSIWVLIPILTLVLGIT 42

BLAST of MS021498.1 vs. ExPASy Swiss-Prot
Match: Q0ZIW3 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Vitis vinifera OX=29760 GN=ndhA PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.5e-05
Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 0

Query: 1  FSRLEFLKEVYGILWVFVPILTNVLGIT 29
          FSRLE+LKEVYGI+W+ VPI T VLGIT
Sbjct: 14 FSRLEYLKEVYGIIWMLVPIFTPVLGIT 41

BLAST of MS021498.1 vs. ExPASy Swiss-Prot
Match: Q09WW3 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Morus indica OX=248361 GN=ndhA PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 3.3e-05
Identity = 21/28 (75.00%), Postives = 23/28 (82.14%), Query Frame = 0

Query: 1  FSRLEFLKEVYGILWVFVPILTNVLGIT 29
          FSR EFLKE YGI+W F+PI T VLGIT
Sbjct: 14 FSRFEFLKETYGIIWAFIPIFTPVLGIT 41

BLAST of MS021498.1 vs. ExPASy Swiss-Prot
Match: Q1KXQ8 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Helianthus annuus OX=4232 GN=ndhA PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 5.6e-05
Identity = 22/28 (78.57%), Postives = 24/28 (85.71%), Query Frame = 0

Query: 1  FSRLEFLKEVYGILWVFVPILTNVLGIT 29
          FSRLE LKEVYGI+WV +PI T VLGIT
Sbjct: 14 FSRLESLKEVYGIIWVLIPIFTPVLGIT 41

BLAST of MS021498.1 vs. ExPASy TrEMBL
Match: A0A6H0ES46 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Trichosanthes kirilowii OX=3677 GN=ndhA PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-04
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 1  FSRLEFLKEVYGILWVFVPILTNVLGIT 29
          FSRLEFLKEVYGILWV VPILT VLGIT
Sbjct: 14 FSRLEFLKEVYGILWVLVPILTTVLGIT 41

BLAST of MS021498.1 vs. ExPASy TrEMBL
Match: A0A7L9D9U5 (NADH-quinone oxidoreductase subunit H OS=Primula prenantha subsp. morsheadiana OX=2763001 GN=ndhA PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-04
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 1  FSRLEFLKEVYGILWVFVPILTNVLGIT 29
          FSRLEFLKE+YGI+W+FVPILT VLGIT
Sbjct: 14 FSRLEFLKEIYGIIWLFVPILTTVLGIT 41

BLAST of MS021498.1 vs. ExPASy TrEMBL
Match: A0A6G7GEZ7 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Primula filchnerae OX=170921 GN=ndhA PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-04
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 1  FSRLEFLKEVYGILWVFVPILTNVLGIT 29
          FSRLEFLKE+YGI+W+FVPILT VLGIT
Sbjct: 14 FSRLEFLKEIYGIIWMFVPILTTVLGIT 41

BLAST of MS021498.1 vs. ExPASy TrEMBL
Match: A0A7L9DA37 (NADH-quinone oxidoreductase subunit H OS=Primula prenantha subsp. prenantha OX=2762997 GN=ndhA PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-04
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = 0

Query: 1  FSRLEFLKEVYGILWVFVPILTNVLGIT 29
          FSRLEFLKE+YGI+W+FVPILT VLGIT
Sbjct: 14 FSRLEFLKEIYGIIWLFVPILTTVLGIT 41

BLAST of MS021498.1 vs. ExPASy TrEMBL
Match: A0A1P8LE62 (NADH-quinone oxidoreductase subunit H OS=Citrullus mucosospermus OX=519315 GN=ndhA PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.2e-04
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 1  FSRLEFLKEVYGILWVFVPILTNVLGIT 29
          FSRLEFLKEVYGILWV VPILT VLGIT
Sbjct: 14 FSRLEFLKEVYGILWVLVPILTTVLGIT 41

BLAST of MS021498.1 vs. TAIR 10
Match: ATCG01100.1 (NADH dehydrogenase family protein )

HSP 1 Score: 40.8 bits (94), Expect = 2.2e-04
Identity = 18/27 (66.67%), Postives = 23/27 (85.19%), Query Frame = 0

Query: 1  FSRLEFLKEVYGILWVFVPILTNVLGI 28
          F +LE LKEVYG++W+FVPI + VLGI
Sbjct: 14 FVKLESLKEVYGLIWIFVPIFSLVLGI 40

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YP_010019789.14.5e-0485.71NADH-plastoquinone oxidoreductase subunit 1 [Primula merrilliana] >QOJ50835.1 NA... [more]
QOJ51088.14.5e-0485.71NADH-plastoquinone oxidoreductase subunit 1 [Primula cicutariifolia][more]
QJS52316.14.5e-0492.86NADH-plastoquinone oxidoreductase subunit 1 [Indofevillea khasiana][more]
QZL38650.14.5e-0492.86NADH dehydrogenase subunit A [Citrullus naudinianus][more]
YP_009751534.14.5e-0492.86NADH dehydrogenase subunit A [Thladiantha dubia] >QIT04015.1 NADH dehydrogenase ... [more]
Match NameE-valueIdentityDescription
Q2QD362.3e-0689.29NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=36... [more]
Q06R751.5e-0582.14NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Jasminum nudiflorum O... [more]
Q0ZIW32.5e-0578.57NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Vitis vinifera OX=297... [more]
Q09WW33.3e-0575.00NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Morus indica OX=24836... [more]
Q1KXQ85.6e-0578.57NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Helianthus annuus OX=... [more]
Match NameE-valueIdentityDescription
A0A6H0ES462.2e-0492.86NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Trichosanthes kirilow... [more]
A0A7L9D9U52.2e-0485.71NADH-quinone oxidoreductase subunit H OS=Primula prenantha subsp. morsheadiana O... [more]
A0A6G7GEZ72.2e-0485.71NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Primula filchnerae OX... [more]
A0A7L9DA372.2e-0485.71NADH-quinone oxidoreductase subunit H OS=Primula prenantha subsp. prenantha OX=2... [more]
A0A1P8LE622.2e-0492.86NADH-quinone oxidoreductase subunit H OS=Citrullus mucosospermus OX=519315 GN=nd... [more]
Match NameE-valueIdentityDescription
ATCG01100.12.2e-0466.67NADH dehydrogenase family protein [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MS021498MS021498gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MS021498.1-cdsMS021498.1-cds-scaffold208:116087..116173CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MS021498.1MS021498.1-proteinpolypeptide