MS021232.1 (mRNA) Bitter gourd (TR) v1

Overview
NameMS021232.1
TypemRNA
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold358: 341057 .. 341329 (+)
Sequence length273
RNA-Seq ExpressionMS021232.1
SyntenyMS021232.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCATGGACGGCAAAAAGTTGAAAATGGTGGCATTTCTGGTGGCAGCCTTGGTTCTGAGCCAAGCAGACATGGGCTTGGGGCTCAGGAGGTTTCCCAAGAGGAAGATGGAGAAGGCTCGAAATATGGCGTTGGACGTCGACATCCTACTCGGCGCCCTCCCGAGAGGCTTGACACCACCGTCTGCCCCGAGCGACCGAGAAAATCCCGCTCCCTTCAGCGGCAGCGATCGGGTGTTGGTGTCAGCTGCCCCGAGCCCCGAAATGGGCCATCAC

mRNA sequence

TCCATGGACGGCAAAAAGTTGAAAATGGTGGCATTTCTGGTGGCAGCCTTGGTTCTGAGCCAAGCAGACATGGGCTTGGGGCTCAGGAGGTTTCCCAAGAGGAAGATGGAGAAGGCTCGAAATATGGCGTTGGACGTCGACATCCTACTCGGCGCCCTCCCGAGAGGCTTGACACCACCGTCTGCCCCGAGCGACCGAGAAAATCCCGCTCCCTTCAGCGGCAGCGATCGGGTGTTGGTGTCAGCTGCCCCGAGCCCCGAAATGGGCCATCAC

Coding sequence (CDS)

TCCATGGACGGCAAAAAGTTGAAAATGGTGGCATTTCTGGTGGCAGCCTTGGTTCTGAGCCAAGCAGACATGGGCTTGGGGCTCAGGAGGTTTCCCAAGAGGAAGATGGAGAAGGCTCGAAATATGGCGTTGGACGTCGACATCCTACTCGGCGCCCTCCCGAGAGGCTTGACACCACCGTCTGCCCCGAGCGACCGAGAAAATCCCGCTCCCTTCAGCGGCAGCGATCGGGTGTTGGTGTCAGCTGCCCCGAGCCCCGAAATGGGCCATCAC

Protein sequence

SMDGKKLKMVAFLVAALVLSQADMGLGLRRFPKRKMEKARNMALDVDILLGALPRGLTPPSAPSDRENPAPFSGSDRVLVSAAPSPEMGHH
Homology
BLAST of MS021232.1 vs. NCBI nr
Match: KGN55050.1 (hypothetical protein Csa_012928 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 8.6e-17
Identity = 57/90 (63.33%), Postives = 68/90 (75.56%), Query Frame = 0

Query: 2  MDGKKLKMVAFLVAALVLSQADMGLGLRRFPKRKMEKARNMALDVD-ILLGALPRGLTPP 61
          M  KKL MVA LV ALVLSQA M LG+R+   ++M K   + +DV+ +LLGALP+G TPP
Sbjct: 2  MGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEM-KMVPIGVDVNYMLLGALPKGPTPP 61

Query: 62 SAPSDRENPAPFSGSDRVLVSAAPSPEMGH 91
          SAPS+R NPAPFS  DRVLVS APSP +GH
Sbjct: 62 SAPSERGNPAPFSDGDRVLVS-APSPGIGH 89

BLAST of MS021232.1 vs. NCBI nr
Match: KAA0066754.1 (hypothetical protein E6C27_scaffold271G00930 [Cucumis melo var. makuwa] >TYK27901.1 hypothetical protein E5676_scaffold384G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 3.6e-15
Identity = 54/90 (60.00%), Postives = 65/90 (72.22%), Query Frame = 0

Query: 2  MDGKKLKMVAFLVAALVLSQADMGLGLRRFPKRKMEKARNMALDVD-ILLGALPRGLTPP 61
          M  +K  MVA LV A VL QA M LG+R+   ++M K   M +DV+ +LLGALP+G TPP
Sbjct: 2  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEM-KMVPMGVDVNYMLLGALPKGPTPP 61

Query: 62 SAPSDRENPAPFSGSDRVLVSAAPSPEMGH 91
          SAPS+R NPAPFS  DRVLVS APSP +GH
Sbjct: 62 SAPSERGNPAPFSDGDRVLVS-APSPGIGH 89

BLAST of MS021232.1 vs. NCBI nr
Match: KAG6607932.1 (hypothetical protein SDJN03_01274, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 4.7e-07
Identity = 35/70 (50.00%), Postives = 43/70 (61.43%), Query Frame = 0

Query: 5  KKLKMVAFLVAALVLSQADMGLGLRRFPKRKMEKARNMALDVDILLGALPRGLTPPSAPS 64
          KK  M A L  A +L Q    L +R F  +  +      +D D+LLG+LPRG  PPSAPS
Sbjct: 4  KKFTMAACLFLAFLLCQPHTTLAIRSFYHKDTKLPSMGVVDFDMLLGSLPRGPIPPSAPS 63

Query: 65 DRENPAPFSG 75
          +RENPAPFSG
Sbjct: 64 NRENPAPFSG 73

BLAST of MS021232.1 vs. ExPASy TrEMBL
Match: A0A0A0KZH3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625050 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.2e-17
Identity = 57/90 (63.33%), Postives = 68/90 (75.56%), Query Frame = 0

Query: 2  MDGKKLKMVAFLVAALVLSQADMGLGLRRFPKRKMEKARNMALDVD-ILLGALPRGLTPP 61
          M  KKL MVA LV ALVLSQA M LG+R+   ++M K   + +DV+ +LLGALP+G TPP
Sbjct: 2  MGSKKLIMVALLVVALVLSQAHMSLGIRKLSNKEM-KMVPIGVDVNYMLLGALPKGPTPP 61

Query: 62 SAPSDRENPAPFSGSDRVLVSAAPSPEMGH 91
          SAPS+R NPAPFS  DRVLVS APSP +GH
Sbjct: 62 SAPSERGNPAPFSDGDRVLVS-APSPGIGH 89

BLAST of MS021232.1 vs. ExPASy TrEMBL
Match: A0A5A7VHE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00860 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.7e-15
Identity = 54/90 (60.00%), Postives = 65/90 (72.22%), Query Frame = 0

Query: 2  MDGKKLKMVAFLVAALVLSQADMGLGLRRFPKRKMEKARNMALDVD-ILLGALPRGLTPP 61
          M  +K  MVA LV A VL QA M LG+R+   ++M K   M +DV+ +LLGALP+G TPP
Sbjct: 2  MGSRKFIMVALLVVASVLCQAHMSLGIRKLSNKEM-KMVPMGVDVNYMLLGALPKGPTPP 61

Query: 62 SAPSDRENPAPFSGSDRVLVSAAPSPEMGH 91
          SAPS+R NPAPFS  DRVLVS APSP +GH
Sbjct: 62 SAPSERGNPAPFSDGDRVLVS-APSPGIGH 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN55050.18.6e-1763.33hypothetical protein Csa_012928 [Cucumis sativus][more]
KAA0066754.13.6e-1560.00hypothetical protein E6C27_scaffold271G00930 [Cucumis melo var. makuwa] >TYK2790... [more]
KAG6607932.14.7e-0750.00hypothetical protein SDJN03_01274, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KZH34.2e-1763.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G625050 PE=4 SV=1[more]
A0A5A7VHE01.7e-1560.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 55..91

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MS021232MS021232gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MS021232.1-cdsMS021232.1-cds-scaffold358:341057..341329CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MS021232.1MS021232.1-proteinpolypeptide