MS020571.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS020571.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	B-box zinc finger protein 20-like
Location	scaffold375: 1279459 .. 1280052 (+)
Sequence length	594
RNA-Seq Expression	MS020571.1
Synteny	MS020571.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATTCGTTGTGATGTTTGCGACATTGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCCGCCCTCTGCGCCGCCTGTGACCGCCAAGTCCACCGCGCGAACAAGCTCGCCGGCAAGCACAGCCGCTTCTCTCTCATCCCATTCGCCGACGCCGCCGAATTACCGCCGCCGTGCGATATTTGCCAACTCCGGCGAGCTGTTCTGTTCTGTAAAGAAGACAGAGCAATCCTCTGCAGCGAATGCGACATTCCGATCCACGAAGCCAACGAACACACGCGGAAGCACAGCCGGTTTCTCCTCACCGGAGTGAAGATTTTGCCGGCGACGGCGTCCTCCTCCGGCGCCGGCCGGGTTGAAGGGGCAGCCATTGATGCTGAAAAAATTGGGTTCTCCAGGGCCTCGAGAAAGAGGGCTAAAATTGGGTCTAATGGGTTGCTTCGAGATCCTCTAATGGAGGAATTTCAGCCATCGATTGGGATTTTGGAGTTTGAAGAAAGTGGAATTAGTGATGGGGTTTCGTTTTCCAAGAGCAGTATTTCAGAGTATCTTGAGAGTTTGCCTGGATGGTGCGTGGAGGAGTTTCTTGAT

mRNA sequence

ATGAAGATTCGTTGTGATGTTTGCGACATTGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCCGCCCTCTGCGCCGCCTGTGACCGCCAAGTCCACCGCGCGAACAAGCTCGCCGGCAAGCACAGCCGCTTCTCTCTCATCCCATTCGCCGACGCCGCCGAATTACCGCCGCCGTGCGATATTTGCCAACTCCGGCGAGCTGTTCTGTTCTGTAAAGAAGACAGAGCAATCCTCTGCAGCGAATGCGACATTCCGATCCACGAAGCCAACGAACACACGCGGAAGCACAGCCGGTTTCTCCTCACCGGAGTGAAGATTTTGCCGGCGACGGCGTCCTCCTCCGGCGCCGGCCGGGTTGAAGGGGCAGCCATTGATGCTGAAAAAATTGGGTTCTCCAGGGCCTCGAGAAAGAGGGCTAAAATTGGGTCTAATGGGTTGCTTCGAGATCCTCTAATGGAGGAATTTCAGCCATCGATTGGGATTTTGGAGTTTGAAGAAAGTGGAATTAGTGATGGGGTTTCGTTTTCCAAGAGCAGTATTTCAGAGTATCTTGAGAGTTTGCCTGGATGGTGCGTGGAGGAGTTTCTTGAT

Coding sequence (CDS)

ATGAAGATTCGTTGTGATGTTTGCGACATTGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCCGCCCTCTGCGCCGCCTGTGACCGCCAAGTCCACCGCGCGAACAAGCTCGCCGGCAAGCACAGCCGCTTCTCTCTCATCCCATTCGCCGACGCCGCCGAATTACCGCCGCCGTGCGATATTTGCCAACTCCGGCGAGCTGTTCTGTTCTGTAAAGAAGACAGAGCAATCCTCTGCAGCGAATGCGACATTCCGATCCACGAAGCCAACGAACACACGCGGAAGCACAGCCGGTTTCTCCTCACCGGAGTGAAGATTTTGCCGGCGACGGCGTCCTCCTCCGGCGCCGGCCGGGTTGAAGGGGCAGCCATTGATGCTGAAAAAATTGGGTTCTCCAGGGCCTCGAGAAAGAGGGCTAAAATTGGGTCTAATGGGTTGCTTCGAGATCCTCTAATGGAGGAATTTCAGCCATCGATTGGGATTTTGGAGTTTGAAGAAAGTGGAATTAGTGATGGGGTTTCGTTTTCCAAGAGCAGTATTTCAGAGTATCTTGAGAGTTTGCCTGGATGGTGCGTGGAGGAGTTTCTTGAT

Protein sequence

MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPCDICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKILPATASSSGAGRVEGAAIDAEKIGFSRASRKRAKIGSNGLLRDPLMEEFQPSIGILEFEESGISDGVSFSKSSISEYLESLPGWCVEEFLD

Homology

[Close]

BLAST of MS020571.1 vs. NCBI nr
Match: XP_022146272.1 (B-box zinc finger protein 20-like [Momordica charantia])

HSP 1 Score: 394.0 bits (1011), Expect = 7.4e-106
Identity = 194/198 (97.98%), Postives = 195/198 (98.48%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC 60
           MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC
Sbjct: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC 60

Query: 61  DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKILPATASSSGAGRV 120
           DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTR H RFLLTGVKILPATASS+GAGRV
Sbjct: 61  DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRNHGRFLLTGVKILPATASSTGAGRV 120

Query: 121 EGAAIDAEKIGFSRASRKRAKIGSNGLLRDPLMEEFQPSIGILEFEESGISDGVSFSKSS 180
           EGAAIDAEKIGFSRASRKRAKIGSNGLLRDPLMEEFQPSIG LEFEESGISDGVSFSKSS
Sbjct: 121 EGAAIDAEKIGFSRASRKRAKIGSNGLLRDPLMEEFQPSIGNLEFEESGISDGVSFSKSS 180

Query: 181 ISEYLESLPGWCVEEFLD 199
           ISEYLESLPGWCVEEFLD
Sbjct: 181 ISEYLESLPGWCVEEFLD 198

[Close]

BLAST of MS020571.1 vs. NCBI nr
Match: KAG6571083.1 (B-box zinc finger protein 21, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010899.1 B-box zinc finger protein 21, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260.4 bits (664), Expect = 1.3e-65
Identity = 137/208 (65.87%), Postives = 157/208 (75.48%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC 60
           MKIRCDVC+ EEASVFCPSDEAALC+ACD  VHRANKLA KHSRF+L+     A  PP C
Sbjct: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTANSPPSC 60

Query: 61  DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKILPATASSSGAGRV 120
           DICQ+RRA LFC EDRAILC ECDIPIH A+EHT+KHSRFLLTGVK+ P+ A+SS +  V
Sbjct: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV 120

Query: 121 EG--------AAIDAEKIGFSRASRKRAKIGSNGLLRDPLMEEFQ-PSIGILEFEESGIS 180
            G          I+AE   F  +SRK+AK+GS GLLR PLME+ Q P +G       G+S
Sbjct: 121 SGGGSDESEEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVG----NFGGMS 180

Query: 181 D-GVSFSKSSISEYLESLPGWCVEEFLD 199
           + GVSFS S+ISEYLESLPGWCVEEFLD
Sbjct: 181 ENGVSFSTSNISEYLESLPGWCVEEFLD 204

[Close]

BLAST of MS020571.1 vs. NCBI nr
Match: XP_022944246.1 (B-box zinc finger protein 20-like [Cucurbita moschata])

HSP 1 Score: 258.8 bits (660), Expect = 3.7e-65
Identity = 136/208 (65.38%), Postives = 156/208 (75.00%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC 60
           MKIRCDVC+ EEASVFCPSDEAALC+ACD  VHRANKLA KHSRF+L+        PP C
Sbjct: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTGNSPPSC 60

Query: 61  DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKILPATASSSGAGRV 120
           DICQ+RRA LFC EDRAILC ECDIPIH A+EHT+KHSRFLLTGVK+ P+ A+SS +  V
Sbjct: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV 120

Query: 121 EG--------AAIDAEKIGFSRASRKRAKIGSNGLLRDPLMEEFQ-PSIGILEFEESGIS 180
            G          I+AE   F  +SRK+AK+GS GLLR PLME+ Q P +G       G+S
Sbjct: 121 SGGGSDESAEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVG----NFGGMS 180

Query: 181 D-GVSFSKSSISEYLESLPGWCVEEFLD 199
           + GVSFS S+ISEYLESLPGWCVEEFLD
Sbjct: 181 ENGVSFSTSNISEYLESLPGWCVEEFLD 204

[Close]

BLAST of MS020571.1 vs. NCBI nr
Match: XP_023513248.1 (B-box zinc finger protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 254.2 bits (648), Expect = 9.1e-64
Identity = 130/206 (63.11%), Postives = 155/206 (75.24%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC 60
           MKIRCDVC+ EEASVFCPSDEAALC+ACD  VH ANKLA KHSRF+L+        PP C
Sbjct: 1   MKIRCDVCNREEASVFCPSDEAALCSACDHHVHCANKLAEKHSRFTLLRSTPTVNSPPSC 60

Query: 61  DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKILPATASSSGAGRV 120
           DICQ+RRA LFC EDRAILC ECDIPIH A+EHT+KHSRFLLTGVK+ P+  +SS +  V
Sbjct: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPTTSSSSSSV 120

Query: 121 EGAAIDAEKIG-------FSRASRKRAKIGSNGLLRDPLMEEFQPSIGILEFEESGISD- 180
            G   ++E++        F   SRK AK+GS GL+R P+ME+ QP I + +F   G+S+ 
Sbjct: 121 SGGGDESEEVTIEAEIGIFKTRSRKEAKMGSKGLIRGPVMEDLQPPI-VGKF--GGMSEN 180

Query: 181 GVSFSKSSISEYLESLPGWCVEEFLD 199
           GV+FS S+ISEYLESLPGWCVEEFLD
Sbjct: 181 GVAFSTSNISEYLESLPGWCVEEFLD 203

[Close]

BLAST of MS020571.1 vs. NCBI nr
Match: XP_022986607.1 (B-box zinc finger protein 20-like [Cucurbita maxima])

HSP 1 Score: 253.1 bits (645), Expect = 2.0e-63
Identity = 132/207 (63.77%), Postives = 153/207 (73.91%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC 60
           MKI CDVC+ EEASVFCPSDEAALC+ACD  VHRANKLA KHSRF+L      A  PP C
Sbjct: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60

Query: 61  DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKILPATASSSGAGRV 120
           DICQ+RRA LF  EDRAILC ECDIPIH A+EHT+KHSRFLLTGVK+ P+ A+SS +  +
Sbjct: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSSI 120

Query: 121 EGAAIDAEKIG-------FSRASRKRAKIGSNGLLRDPLMEEFQ-PSIGILEFEESGISD 180
            G   ++E++        F   SRK AK+GS GLLR PLME+ Q P +G       G+S+
Sbjct: 121 SGGGDESEEVTIEAEIGIFKARSRKEAKMGSKGLLRGPLMEDLQAPIVG----NFGGMSE 180

Query: 181 -GVSFSKSSISEYLESLPGWCVEEFLD 199
            GVSFS S+ISEYLESLPGWCVEEFLD
Sbjct: 181 NGVSFSTSNISEYLESLPGWCVEEFLD 203

[Close]

BLAST of MS020571.1 vs. ExPASy Swiss-Prot
Match: Q9LQZ7 (B-box zinc finger protein 21 OS=Arabidopsis thaliana OX=3702 GN=BBX21 PE=1 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 4.2e-43
Identity = 101/206 (49.03%), Postives = 126/206 (61.17%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC 60
           MKIRCDVCD EEASVFC +DEA+LC  CD QVH ANKLA KH RFSL+  + +    P C
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query: 61  DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKI-------LPATAS 120
           DICQ ++A+LFC++DRAILC +CD  IH ANEHT+KH RFLLTGVK+        P + S
Sbjct: 61  DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKS 120

Query: 121 SSGAGRVEGAAIDAEKIGFSRASRKRAKIGSNGLLRDPLMEEFQPSIGILEFEESGISDG 180
           SS +   +  ++    I      +K        L   P   + QP   I   + S    G
Sbjct: 121 SSSSSSNQDFSVPGSSISNPPPLKK-------PLSAPPQSNKIQPFSKINGGDASVNQWG 180

Query: 181 VSFSKSSISEYL-ESLPGWCVEEFLD 199
              S S+ISEYL ++LPGW VE+FLD
Sbjct: 181 ---STSTISEYLMDTLPGWHVEDFLD 196

[Close]

BLAST of MS020571.1 vs. ExPASy Swiss-Prot
Match: Q0IGM7 (B-box zinc finger protein 20 OS=Arabidopsis thaliana OX=3702 GN=BBX20 PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 9.2e-43
Identity = 112/211 (53.08%), Postives = 129/211 (61.14%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLI--PFADAAELPP 60
           MKI C VCD EEASVFC +DEAALC  CDR VH ANKLAGKH RFSL    F DA    P
Sbjct: 1   MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDA----P 60

Query: 61  PCDICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKILPATASSSGAG 120
            CDIC  RRA+LFC+EDRAILC ECDIPIH+ANEHT+KH+RFLLTGVKI  + ++   A 
Sbjct: 61  LCDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRAS 120

Query: 121 RVEGAAIDAEKIGFSRASRKRAKIGSNGLLRDPLMEEFQPSIGI--------LEFEESGI 180
               AA       F RA + R K  S+ +      E F  S           +E     +
Sbjct: 121 NSNSAA------AFGRA-KTRPKSVSSEVPSSASNEVFTSSSSTTTSNCYYGIEENYHHV 180

Query: 181 SDGVSFS--KSSISEYL-ESLPGWCVEEFLD 199
           SD  S S    SISEYL E+LPGW VE+ L+
Sbjct: 181 SDSGSGSGCTGSISEYLMETLPGWRVEDLLE 200

[Close]

BLAST of MS020571.1 vs. ExPASy Swiss-Prot
Match: Q9SYM2 (B-box zinc finger protein 22 OS=Arabidopsis thaliana OX=3702 GN=BBX22 PE=1 SV=2)

HSP 1 Score: 131.0 bits (328), Expect = 1.5e-29
Identity = 58/107 (54.21%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC 60
           MKI+C+VC+  EA+V C +DEAALC ACD ++H ANKLAGKH R   +P + +A   P C
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQR---VPLSASASSIPKC 60

Query: 61  DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKI 108
           DICQ      FC +DRA+LC +CD+ IH  N H   H RFLLTG+K+
Sbjct: 61  DICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKV 104

[Close]

BLAST of MS020571.1 vs. ExPASy Swiss-Prot
Match: Q96288 (B-box zinc finger protein 24 OS=Arabidopsis thaliana OX=3702 GN=BBX24 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.7e-26
Identity = 56/107 (52.34%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC 60
           MKI+CDVC+   A+V C +DEAALC  CD ++H ANKLA KH R  L   +      P C
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKF---PRC 60

Query: 61  DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKI 108
           DICQ + A +FC EDRA+LC +CD  IH AN  +  H RFL TG+K+
Sbjct: 61  DICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKV 104

[Close]

BLAST of MS020571.1 vs. ExPASy Swiss-Prot
Match: Q9SID1 (B-box zinc finger protein 25 OS=Arabidopsis thaliana OX=3702 GN=BBX25 PE=1 SV=2)

HSP 1 Score: 117.5 bits (293), Expect = 1.8e-25
Identity = 56/114 (49.12%), Postives = 73/114 (64.04%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELP-PP 60
           MKI+CDVC+   A++ C +DEAALCA CD +VH ANKLA KH R     F D+     PP
Sbjct: 1   MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRL----FLDSLSTKFPP 60

Query: 61  CDICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKILPATAS 114
           CDIC  + A +FC EDRA+LC +CD   H  N  +  H RFL TG+++  ++ S
Sbjct: 61  CDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTS 110

[Close]

BLAST of MS020571.1 vs. ExPASy TrEMBL
Match: A0A6J1CZ53 (B-box zinc finger protein 20-like OS=Momordica charantia OX=3673 GN=LOC111015522 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.6e-106
Identity = 194/198 (97.98%), Postives = 195/198 (98.48%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC 60
           MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC
Sbjct: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC 60

Query: 61  DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKILPATASSSGAGRV 120
           DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTR H RFLLTGVKILPATASS+GAGRV
Sbjct: 61  DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRNHGRFLLTGVKILPATASSTGAGRV 120

Query: 121 EGAAIDAEKIGFSRASRKRAKIGSNGLLRDPLMEEFQPSIGILEFEESGISDGVSFSKSS 180
           EGAAIDAEKIGFSRASRKRAKIGSNGLLRDPLMEEFQPSIG LEFEESGISDGVSFSKSS
Sbjct: 121 EGAAIDAEKIGFSRASRKRAKIGSNGLLRDPLMEEFQPSIGNLEFEESGISDGVSFSKSS 180

Query: 181 ISEYLESLPGWCVEEFLD 199
           ISEYLESLPGWCVEEFLD
Sbjct: 181 ISEYLESLPGWCVEEFLD 198

[Close]

BLAST of MS020571.1 vs. ExPASy TrEMBL
Match: A0A6J1FTW5 (B-box zinc finger protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111448752 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.8e-65
Identity = 136/208 (65.38%), Postives = 156/208 (75.00%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC 60
           MKIRCDVC+ EEASVFCPSDEAALC+ACD  VHRANKLA KHSRF+L+        PP C
Sbjct: 1   MKIRCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLLRSTPTGNSPPSC 60

Query: 61  DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKILPATASSSGAGRV 120
           DICQ+RRA LFC EDRAILC ECDIPIH A+EHT+KHSRFLLTGVK+ P+ A+SS +  V
Sbjct: 61  DICQVRRAFLFCLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSTV 120

Query: 121 EG--------AAIDAEKIGFSRASRKRAKIGSNGLLRDPLMEEFQ-PSIGILEFEESGIS 180
            G          I+AE   F  +SRK+AK+GS GLLR PLME+ Q P +G       G+S
Sbjct: 121 SGGGSDESAEVTIEAEIGIFKASSRKKAKMGSKGLLRGPLMEDLQAPIVG----NFGGMS 180

Query: 181 D-GVSFSKSSISEYLESLPGWCVEEFLD 199
           + GVSFS S+ISEYLESLPGWCVEEFLD
Sbjct: 181 ENGVSFSTSNISEYLESLPGWCVEEFLD 204

[Close]

BLAST of MS020571.1 vs. ExPASy TrEMBL
Match: A0A6J1J816 (B-box zinc finger protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111484297 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 9.9e-64
Identity = 132/207 (63.77%), Postives = 153/207 (73.91%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC 60
           MKI CDVC+ EEASVFCPSDEAALC+ACD  VHRANKLA KHSRF+L      A  PP C
Sbjct: 1   MKIHCDVCNKEEASVFCPSDEAALCSACDHHVHRANKLAEKHSRFTLFRSTPTANSPPSC 60

Query: 61  DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKILPATASSSGAGRV 120
           DICQ+RRA LF  EDRAILC ECDIPIH A+EHT+KHSRFLLTGVK+ P+ A+SS +  +
Sbjct: 61  DICQVRRAFLFYLEDRAILCRECDIPIHGASEHTQKHSRFLLTGVKVSPSPATSSSSSSI 120

Query: 121 EGAAIDAEKIG-------FSRASRKRAKIGSNGLLRDPLMEEFQ-PSIGILEFEESGISD 180
            G   ++E++        F   SRK AK+GS GLLR PLME+ Q P +G       G+S+
Sbjct: 121 SGGGDESEEVTIEAEIGIFKARSRKEAKMGSKGLLRGPLMEDLQAPIVG----NFGGMSE 180

Query: 181 -GVSFSKSSISEYLESLPGWCVEEFLD 199
            GVSFS S+ISEYLESLPGWCVEEFLD
Sbjct: 181 NGVSFSTSNISEYLESLPGWCVEEFLD 203

[Close]

BLAST of MS020571.1 vs. ExPASy TrEMBL
Match: A0A6J1C1I6 (B-box zinc finger protein 20 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007609 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 7.1e-54
Identity = 119/201 (59.20%), Postives = 139/201 (69.15%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLI-PFADAAELPPP 60
           MKIRCDVCD  EA+VFC +DEAALC  CD QVH+ANKLAGKHSRFSL+ P    +   P 
Sbjct: 1   MKIRCDVCDKAEAAVFCSADEAALCHGCDLQVHQANKLAGKHSRFSLLQPIVTES---PI 60

Query: 61  CDICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKILPATASSSGAGR 120
           CDICQ RRA++FC++DRAILC ECDI IHEANEHT+KHSRFLLTGVK+ P   S   +  
Sbjct: 61  CDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHSRFLLTGVKLSPTCFSYQTSSS 120

Query: 121 VEG--AAIDAEKIGFSRASRKRAKIGSNGLLRDPLMEEFQPSIGILEFEESGISDGVSFS 180
            +G  A +D  K G S A  KR K  +  +      E+  PS    + E+   SDG S S
Sbjct: 121 SDGCDAGMDV-KTGSSHACSKRPKTATKEISSSHSAEKAAPSTSNYKAEDGQASDGGSLS 180

Query: 181 KSSISEYLESLPGWCVEEFLD 199
            SSISEYLE+LPGWCVEEFLD
Sbjct: 181 TSSISEYLETLPGWCVEEFLD 197

[Close]

BLAST of MS020571.1 vs. ExPASy TrEMBL
Match: A0A6J1C1T9 (B-box zinc finger protein 20 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111007609 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 7.1e-54
Identity = 119/201 (59.20%), Postives = 139/201 (69.15%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLI-PFADAAELPPP 60
           MKIRCDVCD  EA+VFC +DEAALC  CD QVH+ANKLAGKHSRFSL+ P    +   P 
Sbjct: 1   MKIRCDVCDKAEAAVFCSADEAALCHGCDLQVHQANKLAGKHSRFSLLQPIVTES---PI 60

Query: 61  CDICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKILPATASSSGAGR 120
           CDICQ RRA++FC++DRAILC ECDI IHEANEHT+KHSRFLLTGVK+ P   S   +  
Sbjct: 61  CDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHSRFLLTGVKLSPTCFSYQTSSS 120

Query: 121 VEG--AAIDAEKIGFSRASRKRAKIGSNGLLRDPLMEEFQPSIGILEFEESGISDGVSFS 180
            +G  A +D  K G S A  KR K  +  +      E+  PS    + E+   SDG S S
Sbjct: 121 SDGCDAGMDV-KTGSSHACSKRPKTATKEISSSHSAEKAAPSTSNYKAEDGQASDGGSLS 180

Query: 181 KSSISEYLESLPGWCVEEFLD 199
            SSISEYLE+LPGWCVEEFLD
Sbjct: 181 TSSISEYLETLPGWCVEEFLD 197

[Close]

BLAST of MS020571.1 vs. TAIR 10
Match: AT1G75540.1 (salt tolerance homolog2 )

HSP 1 Score: 176.0 bits (445), Expect = 2.9e-44
Identity = 101/206 (49.03%), Postives = 126/206 (61.17%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC 60
           MKIRCDVCD EEASVFC +DEA+LC  CD QVH ANKLA KH RFSL+  + +    P C
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query: 61  DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKI-------LPATAS 120
           DICQ ++A+LFC++DRAILC +CD  IH ANEHT+KH RFLLTGVK+        P + S
Sbjct: 61  DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKS 120

Query: 121 SSGAGRVEGAAIDAEKIGFSRASRKRAKIGSNGLLRDPLMEEFQPSIGILEFEESGISDG 180
           SS +   +  ++    I      +K        L   P   + QP   I   + S    G
Sbjct: 121 SSSSSSNQDFSVPGSSISNPPPLKK-------PLSAPPQSNKIQPFSKINGGDASVNQWG 180

Query: 181 VSFSKSSISEYL-ESLPGWCVEEFLD 199
              S S+ISEYL ++LPGW VE+FLD
Sbjct: 181 ---STSTISEYLMDTLPGWHVEDFLD 196

[Close]

BLAST of MS020571.1 vs. TAIR 10
Match: AT4G39070.1 (B-box zinc finger family protein )

HSP 1 Score: 174.9 bits (442), Expect = 6.6e-44
Identity = 112/211 (53.08%), Postives = 129/211 (61.14%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLI--PFADAAELPP 60
           MKI C VCD EEASVFC +DEAALC  CDR VH ANKLAGKH RFSL    F DA    P
Sbjct: 1   MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDA----P 60

Query: 61  PCDICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKILPATASSSGAG 120
            CDIC  RRA+LFC+EDRAILC ECDIPIH+ANEHT+KH+RFLLTGVKI  + ++   A 
Sbjct: 61  LCDICGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRAS 120

Query: 121 RVEGAAIDAEKIGFSRASRKRAKIGSNGLLRDPLMEEFQPSIGI--------LEFEESGI 180
               AA       F RA + R K  S+ +      E F  S           +E     +
Sbjct: 121 NSNSAA------AFGRA-KTRPKSVSSEVPSSASNEVFTSSSSTTTSNCYYGIEENYHHV 180

Query: 181 SDGVSFS--KSSISEYL-ESLPGWCVEEFLD 199
           SD  S S    SISEYL E+LPGW VE+ L+
Sbjct: 181 SDSGSGSGCTGSISEYLMETLPGWRVEDLLE 200

[Close]

BLAST of MS020571.1 vs. TAIR 10
Match: AT1G78600.1 (light-regulated zinc finger protein 1 )

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-30
Identity = 58/107 (54.21%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC 60
           MKI+C+VC+  EA+V C +DEAALC ACD ++H ANKLAGKH R   +P + +A   P C
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQR---VPLSASASSIPKC 60

Query: 61  DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKI 108
           DICQ      FC +DRA+LC +CD+ IH  N H   H RFLLTG+K+
Sbjct: 61  DICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKV 104

[Close]

BLAST of MS020571.1 vs. TAIR 10
Match: AT1G78600.2 (light-regulated zinc finger protein 1 )

HSP 1 Score: 131.0 bits (328), Expect = 1.1e-30
Identity = 58/107 (54.21%), Postives = 74/107 (69.16%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC 60
           MKI+C+VC+  EA+V C +DEAALC ACD ++H ANKLAGKH R   +P + +A   P C
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQR---VPLSASASSIPKC 60

Query: 61  DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKI 108
           DICQ      FC +DRA+LC +CD+ IH  N H   H RFLLTG+K+
Sbjct: 61  DICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKV 104

[Close]

BLAST of MS020571.1 vs. TAIR 10
Match: AT1G06040.2 (B-box zinc finger family protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-27
Identity = 56/107 (52.34%), Postives = 70/107 (65.42%), Query Frame = 0


Query: 1   MKIRCDVCDIEEASVFCPSDEAALCAACDRQVHRANKLAGKHSRFSLIPFADAAELPPPC 60
           MKI+CDVC+   A+V C +DEAALC  CD ++H ANKLA KH R  L   +      P C
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKF---PRC 60

Query: 61  DICQLRRAVLFCKEDRAILCSECDIPIHEANEHTRKHSRFLLTGVKI 108
           DICQ + A +FC EDRA+LC +CD  IH AN  +  H RFL TG+K+
Sbjct: 61  DICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKV 104

The following BLAST results are available for this feature:

BLAST of MS020571.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146272.1	7.4e-106	97.98	B-box zinc finger protein 20-like [Momordica charantia]	[more]
KAG6571083.1	1.3e-65	65.87	B-box zinc finger protein 21, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022944246.1	3.7e-65	65.38	B-box zinc finger protein 20-like [Cucurbita moschata]	[more]
XP_023513248.1	9.1e-64	63.11	B-box zinc finger protein 20-like [Cucurbita pepo subsp. pepo]	[more]
XP_022986607.1	2.0e-63	63.77	B-box zinc finger protein 20-like [Cucurbita maxima]	[more]

BLAST of MS020571.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQZ7	4.2e-43	49.03	B-box zinc finger protein 21 OS=Arabidopsis thaliana OX=3702 GN=BBX21 PE=1 SV=1	[more]
Q0IGM7	9.2e-43	53.08	B-box zinc finger protein 20 OS=Arabidopsis thaliana OX=3702 GN=BBX20 PE=1 SV=1	[more]
Q9SYM2	1.5e-29	54.21	B-box zinc finger protein 22 OS=Arabidopsis thaliana OX=3702 GN=BBX22 PE=1 SV=2	[more]
Q96288	2.7e-26	52.34	B-box zinc finger protein 24 OS=Arabidopsis thaliana OX=3702 GN=BBX24 PE=1 SV=1	[more]
Q9SID1	1.8e-25	49.12	B-box zinc finger protein 25 OS=Arabidopsis thaliana OX=3702 GN=BBX25 PE=1 SV=2	[more]

BLAST of MS020571.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CZ53	3.6e-106	97.98	B-box zinc finger protein 20-like OS=Momordica charantia OX=3673 GN=LOC111015522...	[more]
A0A6J1FTW5	1.8e-65	65.38	B-box zinc finger protein 20-like OS=Cucurbita moschata OX=3662 GN=LOC111448752 ...	[more]
A0A6J1J816	9.9e-64	63.77	B-box zinc finger protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111484297 PE...	[more]
A0A6J1C1I6	7.1e-54	59.20	B-box zinc finger protein 20 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1C1T9	7.1e-54	59.20	B-box zinc finger protein 20 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111...	[more]

BLAST of MS020571.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75540.1	2.9e-44	49.03	salt tolerance homolog2	[more]
AT4G39070.1	6.6e-44	53.08	B-box zinc finger family protein	[more]
AT1G78600.1	1.1e-30	54.21	light-regulated zinc finger protein 1	[more]
AT1G78600.2	1.1e-30	54.21	light-regulated zinc finger protein 1	[more]
AT1G06040.2	1.9e-27	52.34	B-box zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000315	B-box-type zinc finger	SMART	SM00336	bboxneu5	coord: 55..102 e-value: 5.3E-12 score: 55.9 coord: 4..47 e-value: 2.1E-10 score: 50.6
IPR000315	B-box-type zinc finger	PFAM	PF00643	zf-B_box	coord: 3..44 e-value: 5.0E-7 score: 29.8 coord: 58..95 e-value: 2.8E-7 score: 30.6
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 1..47 score: 10.551608
IPR000315	B-box-type zinc finger	PROSITE	PS50119	ZF_BBOX	coord: 60..102 score: 9.598574
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 1..101 e-value: 1.3E-9 score: 40.4
None	No IPR available	PANTHER	PTHR31832:SF52	B-BOX ZINC FINGER PROTEIN 20	coord: 1..198
None	No IPR available	PANTHER	PTHR31832	B-BOX ZINC FINGER PROTEIN 22	coord: 1..198
None	No IPR available	CDD	cd19821	Bbox1_BBX-like	coord: 59..102 e-value: 1.92315E-14 score: 62.7003
None	No IPR available	CDD	cd19821	Bbox1_BBX-like	coord: 5..47 e-value: 9.8756E-15 score: 63.4707

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS020571	MS020571	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS020571.1-cds	MS020571.1-cds-scaffold375:1279459..1280052	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS020571.1	MS020571.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding