MS020538.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS020538.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Basic helix-loop-helix transcription factor
Location	scaffold375: 1005949 .. 1006459 (+)
Sequence length	339
RNA-Seq Expression	MS020538.1
Synteny	MS020538.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAACAGAGGAAACAGAGACATGGAAGCAGAATTCAAAAGCATCTGAAGAAGTTAAAAAATCAGAATACATTCACGTTCGAGCACGTCGAGGCCAAGCCACGGACAGCCATAGCCTGGCAGAAAGAGTAAGAATTCTCGAGATTATGGAACAGGGGACTCTGTTTTTTCTGTTTGTTTCTCGGGAAAATGAAAATGTGACTGTGCAGGCGAGGAGAGAGAAGATTAGTGAGAGGATGAAATGTCTGCAGAATTTGGTGCCTGGGTGTGACAGAATCGCTGGAAAAGCTGGAATGCTCGACGAGATTATAAATTATGTTCAATCTCTTCAGCAGCAAGTGGAGGTGATAATTTCATCTCTAAAACAACTTCAAAAAAAAAAAAGTGAAATTATTTACCAAAAATTTGAGGCATTTTTTGTTGAATGTGAAGCAGTTCTTATCAATGAAGTTGGCTGCTCTGAATCCCACACTCGAGTTCATCAATGTCGACCACCAATTTGCCAAACAGGTG

mRNA sequence

AGAACAGAGGAAACAGAGACATGGAAGCAGAATTCAAAAGCATCTGAAGAAGTTAAAAAATCAGAATACATTCACGTTCGAGCACGTCGAGGCCAAGCCACGGACAGCCATAGCCTGGCAGAAAGAGCGAGGAGAGAGAAGATTAGTGAGAGGATGAAATGTCTGCAGAATTTGGTGCCTGGGTGTGACAGAATCGCTGGAAAAGCTGGAATGCTCGACGAGATTATAAATTATGTTCAATCTCTTCAGCAGCAAGTGGAGTTCTTATCAATGAAGTTGGCTGCTCTGAATCCCACACTCGAGTTCATCAATGTCGACCACCAATTTGCCAAACAGGTG

Coding sequence (CDS)

AGAACAGAGGAAACAGAGACATGGAAGCAGAATTCAAAAGCATCTGAAGAAGTTAAAAAATCAGAATACATTCACGTTCGAGCACGTCGAGGCCAAGCCACGGACAGCCATAGCCTGGCAGAAAGAGCGAGGAGAGAGAAGATTAGTGAGAGGATGAAATGTCTGCAGAATTTGGTGCCTGGGTGTGACAGAATCGCTGGAAAAGCTGGAATGCTCGACGAGATTATAAATTATGTTCAATCTCTTCAGCAGCAAGTGGAGTTCTTATCAATGAAGTTGGCTGCTCTGAATCCCACACTCGAGTTCATCAATGTCGACCACCAATTTGCCAAACAGGTG

Protein sequence

RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQV

Homology

[Close]

BLAST of MS020538.1 vs. NCBI nr
Match: XP_022146228.1 (transcription factor bHLH63-like [Momordica charantia])

HSP 1 Score: 218.4 bits (555), Expect = 3.2e-53
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVP 60
           RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVP
Sbjct: 109 RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVP 168

Query: 61  GCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQV 114
           GCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQV
Sbjct: 169 GCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQV 221

[Close]

BLAST of MS020538.1 vs. NCBI nr
Match: XP_038901962.1 (transcription factor bHLH62-like isoform X3 [Benincasa hispida])

HSP 1 Score: 176.8 bits (447), Expect = 1.1e-40
Identity = 95/113 (84.07%), Postives = 103/113 (91.15%), Query Frame = 0


Query: 2   TEETETWKQ-NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVP 61
           TEETE WK+ NSKA EEV+KSEY+HVRARRGQATDSHSLAERARREKISERMK LQNLVP
Sbjct: 131 TEETERWKKHNSKALEEVQKSEYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVP 190

Query: 62  GCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQV 114
           GC++IAGKAGMLDEIINYVQSLQQQVEFLS K+AALN  ++FINVD   AKQV
Sbjct: 191 GCNKIAGKAGMLDEIINYVQSLQQQVEFLSRKVAALNHRVDFINVDDLLAKQV 243

[Close]

BLAST of MS020538.1 vs. NCBI nr
Match: XP_004148863.3 (transcription factor bHLH78 isoform X2 [Cucumis sativus] >KAE8651873.1 hypothetical protein Csa_006710 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-40
Identity = 93/114 (81.58%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 2   TEETETWKQ--NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLV 61
           TEETE WK+  NSK SEE+KK +Y+HVRARRGQATDSHSLAERARREKISERMK LQNLV
Sbjct: 135 TEETERWKKHNNSKGSEEIKKMDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLV 194

Query: 62  PGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQV 114
           PGC++IAGKAGMLDEIINYVQSLQQQVEFLSMK+AALN  ++FINVD   AKQ+
Sbjct: 195 PGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDLLAKQM 248

[Close]

BLAST of MS020538.1 vs. NCBI nr
Match: XP_038901960.1 (transcription factor bHLH63-like isoform X1 [Benincasa hispida])

HSP 1 Score: 175.3 bits (443), Expect = 3.1e-40
Identity = 94/112 (83.93%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 2   TEETETWKQ-NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVP 61
           TEETE WK+ NSKA EEV+KSEY+HVRARRGQATDSHSLAERARREKISERMK LQNLVP
Sbjct: 131 TEETERWKKHNSKALEEVQKSEYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVP 190

Query: 62  GCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQ 113
           GC++IAGKAGMLDEIINYVQSLQQQVEFLS K+AALN  ++FINVD   AKQ
Sbjct: 191 GCNKIAGKAGMLDEIINYVQSLQQQVEFLSRKVAALNHRVDFINVDDLLAKQ 242

[Close]

BLAST of MS020538.1 vs. NCBI nr
Match: XP_038901961.1 (transcription factor bHLH63-like isoform X2 [Benincasa hispida])

HSP 1 Score: 175.3 bits (443), Expect = 3.1e-40
Identity = 94/112 (83.93%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 2   TEETETWKQ-NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVP 61
           TEETE WK+ NSKA EEV+KSEY+HVRARRGQATDSHSLAERARREKISERMK LQNLVP
Sbjct: 129 TEETERWKKHNSKALEEVQKSEYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVP 188

Query: 62  GCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQ 113
           GC++IAGKAGMLDEIINYVQSLQQQVEFLS K+AALN  ++FINVD   AKQ
Sbjct: 189 GCNKIAGKAGMLDEIINYVQSLQQQVEFLSRKVAALNHRVDFINVDDLLAKQ 240

[Close]

BLAST of MS020538.1 vs. ExPASy Swiss-Prot
Match: Q8GY61 (Transcription factor bHLH63 OS=Arabidopsis thaliana OX=3702 GN=BHLH63 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.0e-35
Identity = 78/113 (69.03%), Postives = 96/113 (84.96%), Query Frame = 0


Query: 1   RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVP 60
           + EE      +SK ++E++K++YIHVRARRGQATDSHS+AER RREKISERMK LQ+LVP
Sbjct: 147 KKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVP 206

Query: 61  GCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQV 114
           GCD+I GKAGMLDEIINYVQSLQ+Q+EFLSMKLA +NP  +F ++D  FAK+V
Sbjct: 207 GCDKITGKAGMLDEIINYVQSLQRQIEFLSMKLAIVNPRPDF-DMDDIFAKEV 258

[Close]

BLAST of MS020538.1 vs. ExPASy Swiss-Prot
Match: Q93VJ4 (Transcription factor BEE 2 OS=Arabidopsis thaliana OX=3702 GN=BEE2 PE=1 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 9.0e-35
Identity = 73/102 (71.57%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 11  NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAG 70
           N++ S E++K +YIHVRARRG+ATD HSLAERARREKIS++MKCLQ++VPGC+++ GKAG
Sbjct: 126 NTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAG 185

Query: 71  MLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQ 113
           MLDEIINYVQSLQQQVEFLSMKL+ +NP LE  ++D   AKQ
Sbjct: 186 MLDEIINYVQSLQQQVEFLSMKLSVINPELE-CHIDDLSAKQ 226

[Close]

BLAST of MS020538.1 vs. ExPASy Swiss-Prot
Match: Q9ZPW3 (Transcription factor HBI1 OS=Arabidopsis thaliana OX=3702 GN=HBI1 PE=1 SV=3)

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-32
Identity = 71/97 (73.20%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 5   TETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDR 64
           ++T K+ SK + E +K +YIHVRARRGQATD HSLAERARREKIS++MK LQ++VPGC++
Sbjct: 164 SDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNK 223

Query: 65  IAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLE 102
           + GKAGMLDEIINYVQ LQ+QVEFLSMKLA LNP LE
Sbjct: 224 VTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPELE 260

[Close]

BLAST of MS020538.1 vs. ExPASy Swiss-Prot
Match: Q6NKN9 (Transcription factor bHLH74 OS=Arabidopsis thaliana OX=3702 GN=BHLH74 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 4.2e-32
Identity = 75/111 (67.57%), Postives = 87/111 (78.38%), Query Frame = 0


Query: 3   EETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGC 62
           +  ET  + S  SEE  K  YIH+RARRGQAT+SHSLAER RREKISERM+ LQ LVPGC
Sbjct: 183 QSKETVNKESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGC 242

Query: 63  DRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQV 114
           ++I GKA MLDEIINYVQSLQQQVEFLSMKLA +NP +  I++D   AK +
Sbjct: 243 NKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPEIN-IDIDRILAKDL 292

[Close]

BLAST of MS020538.1 vs. ExPASy Swiss-Prot
Match: Q9CAA9 (Transcription factor bHLH49 OS=Arabidopsis thaliana OX=3702 GN=BHLH49 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.1e-31
Identity = 73/109 (66.97%), Postives = 89/109 (81.65%), Query Frame = 0


Query: 3   EETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGC 62
           +++ + KQ  K S +  K  YIHVRARRGQAT+SHSLAER RREKISERMK LQ+LVPGC
Sbjct: 280 KKSNSGKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGC 339

Query: 63  DRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAK 112
           +++ GKA MLDEIINYVQSLQ+QVEFLSMKLA +NP ++F N++   AK
Sbjct: 340 NKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDF-NLEGLLAK 387

[Close]

BLAST of MS020538.1 vs. ExPASy TrEMBL
Match: A0A6J1CY11 (transcription factor bHLH63-like OS=Momordica charantia OX=3673 GN=LOC111015493 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 1.5e-53
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0


Query: 1   RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVP 60
           RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVP
Sbjct: 109 RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVP 168

Query: 61  GCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQV 114
           GCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQV
Sbjct: 169 GCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQV 221

[Close]

BLAST of MS020538.1 vs. ExPASy TrEMBL
Match: A0A5D3DY78 (Transcription factor bHLH78 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00550 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.3e-39
Identity = 94/117 (80.34%), Postives = 104/117 (88.89%), Query Frame = 0


Query: 2   TEETETWKQ---NSKA--SEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQ 61
           TEETE WK+   NSKA  SEE+KK +Y+HVRARRGQATDSHSLAERARREKISERMK LQ
Sbjct: 133 TEETERWKKHNNNSKANSSEEIKKLDYVHVRARRGQATDSHSLAERARREKISERMKYLQ 192

Query: 62  NLVPGCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQV 114
           NLVPGC++IAGKAGMLDEIINYVQSLQQQVEFLSMK+AALN  ++FINVD   AKQ+
Sbjct: 193 NLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDLLAKQM 249

[Close]

BLAST of MS020538.1 vs. ExPASy TrEMBL
Match: A0A6J1G5R2 (transcription factor bHLH63-like OS=Cucurbita moschata OX=3662 GN=LOC111451059 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 6.9e-38
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 2   TEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPG 61
           TEETET KQ+S+A      S+Y+HVRAR GQATDSHSLAERARREKISERMK LQNLVPG
Sbjct: 125 TEETETSKQSSRA------SDYVHVRARPGQATDSHSLAERARREKISERMKYLQNLVPG 184

Query: 62  CDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQV 114
           C++IAGKAGMLDEIINYVQSLQQQVEFLSMKLA  NP L+FINVD  F KQV
Sbjct: 185 CNKIAGKAGMLDEIINYVQSLQQQVEFLSMKLATANPRLDFINVDDPFCKQV 230

[Close]

BLAST of MS020538.1 vs. ExPASy TrEMBL
Match: A0A6J1L7P5 (transcription factor bHLH63-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499945 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.2e-37
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVP 60
           +TEETET KQ+S+A      S+Y+ VRARRGQATDSHSLAERARREKISERMK LQNLVP
Sbjct: 123 QTEETETSKQSSRA------SDYVPVRARRGQATDSHSLAERARREKISERMKYLQNLVP 182

Query: 61  GCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQV 114
           GC++IAGKAGMLDEIINYVQSLQQQVEFLSMKLA  NP L+FINVD  F+KQV
Sbjct: 183 GCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKLATANPRLDFINVDDPFSKQV 229

[Close]

BLAST of MS020538.1 vs. ExPASy TrEMBL
Match: A0A6J1L4Z2 (transcription factor bHLH63-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499945 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 4.5e-37
Identity = 89/113 (78.76%), Postives = 98/113 (86.73%), Query Frame = 0


Query: 1   RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVP 60
           +TEETET KQ+S+A      S+Y+ VRARRGQATDSHSLAERARREKISERMK LQNLVP
Sbjct: 123 QTEETETSKQSSRA------SDYVPVRARRGQATDSHSLAERARREKISERMKYLQNLVP 182

Query: 61  GCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQV 114
           GC++IAGKAGMLDEIINYVQSLQQQVEFLSMKLA  NP L+FINVD  F+K V
Sbjct: 183 GCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKLATANPRLDFINVDDPFSKMV 229

[Close]

BLAST of MS020538.1 vs. TAIR 10
Match: AT4G34530.1 (cryptochrome-interacting basic-helix-loop-helix 1 )

HSP 1 Score: 148.7 bits (374), Expect = 2.9e-36
Identity = 78/113 (69.03%), Postives = 96/113 (84.96%), Query Frame = 0


Query: 1   RTEETETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVP 60
           + EE      +SK ++E++K++YIHVRARRGQATDSHS+AER RREKISERMK LQ+LVP
Sbjct: 147 KKEENNFSNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVP 206

Query: 61  GCDRIAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQV 114
           GCD+I GKAGMLDEIINYVQSLQ+Q+EFLSMKLA +NP  +F ++D  FAK+V
Sbjct: 207 GCDKITGKAGMLDEIINYVQSLQRQIEFLSMKLAIVNPRPDF-DMDDIFAKEV 258

[Close]

BLAST of MS020538.1 vs. TAIR 10
Match: AT4G36540.1 (BR enhanced expression 2 )

HSP 1 Score: 147.5 bits (371), Expect = 6.4e-36
Identity = 73/102 (71.57%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 11  NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAG 70
           N++ S E++K +YIHVRARRG+ATD HSLAERARREKIS++MKCLQ++VPGC+++ GKAG
Sbjct: 126 NTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAG 185

Query: 71  MLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQ 113
           MLDEIINYVQSLQQQVEFLSMKL+ +NP LE  ++D   AKQ
Sbjct: 186 MLDEIINYVQSLQQQVEFLSMKLSVINPELE-CHIDDLSAKQ 226

[Close]

BLAST of MS020538.1 vs. TAIR 10
Match: AT4G36540.2 (BR enhanced expression 2 )

HSP 1 Score: 147.5 bits (371), Expect = 6.4e-36
Identity = 73/102 (71.57%), Postives = 90/102 (88.24%), Query Frame = 0


Query: 11  NSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDRIAGKAG 70
           N++ S E++K +YIHVRARRG+ATD HSLAERARREKIS++MKCLQ++VPGC+++ GKAG
Sbjct: 126 NTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAG 185

Query: 71  MLDEIINYVQSLQQQVEFLSMKLAALNPTLEFINVDHQFAKQ 113
           MLDEIINYVQSLQQQVEFLSMKL+ +NP LE  ++D   AKQ
Sbjct: 186 MLDEIINYVQSLQQQVEFLSMKLSVINPELE-CHIDDLSAKQ 226

[Close]

BLAST of MS020538.1 vs. TAIR 10
Match: AT2G18300.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 139.8 bits (351), Expect = 1.3e-33
Identity = 71/97 (73.20%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 5   TETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDR 64
           ++T K+ SK + E +K +YIHVRARRGQATD HSLAERARREKIS++MK LQ++VPGC++
Sbjct: 164 SDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNK 223

Query: 65  IAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLE 102
           + GKAGMLDEIINYVQ LQ+QVEFLSMKLA LNP LE
Sbjct: 224 VTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPELE 260

[Close]

BLAST of MS020538.1 vs. TAIR 10
Match: AT2G18300.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 139.8 bits (351), Expect = 1.3e-33
Identity = 71/97 (73.20%), Postives = 85/97 (87.63%), Query Frame = 0


Query: 5   TETWKQNSKASEEVKKSEYIHVRARRGQATDSHSLAERARREKISERMKCLQNLVPGCDR 64
           ++T K+ SK + E +K +YIHVRARRGQATD HSLAERARREKIS++MK LQ++VPGC++
Sbjct: 164 SDTSKETSKGASENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNK 223

Query: 65  IAGKAGMLDEIINYVQSLQQQVEFLSMKLAALNPTLE 102
           + GKAGMLDEIINYVQ LQ+QVEFLSMKLA LNP LE
Sbjct: 224 VTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPELE 260

The following BLAST results are available for this feature:

BLAST of MS020538.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146228.1	3.2e-53	100.00	transcription factor bHLH63-like [Momordica charantia]	[more]
XP_038901962.1	1.1e-40	84.07	transcription factor bHLH62-like isoform X3 [Benincasa hispida]	[more]
XP_004148863.3	1.4e-40	81.58	transcription factor bHLH78 isoform X2 [Cucumis sativus] >KAE8651873.1 hypotheti...	[more]
XP_038901960.1	3.1e-40	83.93	transcription factor bHLH63-like isoform X1 [Benincasa hispida]	[more]
XP_038901961.1	3.1e-40	83.93	transcription factor bHLH63-like isoform X2 [Benincasa hispida]	[more]

BLAST of MS020538.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GY61	4.0e-35	69.03	Transcription factor bHLH63 OS=Arabidopsis thaliana OX=3702 GN=BHLH63 PE=1 SV=1	[more]
Q93VJ4	9.0e-35	71.57	Transcription factor BEE 2 OS=Arabidopsis thaliana OX=3702 GN=BEE2 PE=1 SV=1	[more]
Q9ZPW3	1.9e-32	73.20	Transcription factor HBI1 OS=Arabidopsis thaliana OX=3702 GN=HBI1 PE=1 SV=3	[more]
Q6NKN9	4.2e-32	67.57	Transcription factor bHLH74 OS=Arabidopsis thaliana OX=3702 GN=BHLH74 PE=1 SV=1	[more]
Q9CAA9	2.1e-31	66.97	Transcription factor bHLH49 OS=Arabidopsis thaliana OX=3702 GN=BHLH49 PE=1 SV=1	[more]

BLAST of MS020538.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CY11	1.5e-53	100.00	transcription factor bHLH63-like OS=Momordica charantia OX=3673 GN=LOC111015493 ...	[more]
A0A5D3DY78	1.3e-39	80.34	Transcription factor bHLH78 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A6J1G5R2	6.9e-38	80.36	transcription factor bHLH63-like OS=Cucurbita moschata OX=3662 GN=LOC111451059 P...	[more]
A0A6J1L7P5	1.2e-37	79.65	transcription factor bHLH63-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1L4Z2	4.5e-37	78.76	transcription factor bHLH63-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of MS020538.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G34530.1	2.9e-36	69.03	cryptochrome-interacting basic-helix-loop-helix 1	[more]
AT4G36540.1	6.4e-36	71.57	BR enhanced expression 2	[more]
AT4G36540.2	6.4e-36	71.57	BR enhanced expression 2	[more]
AT2G18300.1	1.3e-33	73.20	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT2G18300.2	1.3e-33	73.20	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 38..88 e-value: 1.1E-9 score: 48.2
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 36..83 e-value: 1.3E-6 score: 28.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 32..82 score: 15.224302
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 28..104 e-value: 1.6E-16 score: 62.1
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 29..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..43
None	No IPR available	PANTHER	PTHR12565:SF402	TRANSCRIPTION FACTOR BHLH63	coord: 9..112
None	No IPR available	CDD	cd18919	bHLH_AtBPE_like	coord: 22..106 e-value: 2.98292E-58 score: 172.241
IPR024097	Basic helix-loop-helix leucine zipper transcription factor	PANTHER	PTHR12565	STEROL REGULATORY ELEMENT-BINDING PROTEIN	coord: 9..112

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS020538	MS020538	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS020538.1-cds	MS020538.1-cds-scaffold375:1005949..1006074	CDS
MS020538.1-cds	MS020538.1-cds-scaffold375:1006156..1006290	CDS
MS020538.1-cds	MS020538.1-cds-scaffold375:1006382..1006459	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS020538.1	MS020538.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0046983	protein dimerization activity