MS019109.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS019109.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	cAMP-regulated phosphoprotein 19-related protein
Location	scaffold20: 1548576 .. 1549142 (-)
Sequence length	252
RNA-Seq Expression	MS019109.1
Synteny	MS019109.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAGCATATCAAAGAGACGGAACGAGTGGACGGAGATGGACATGTTGGATCTGAAAAACCCATGCCATCATCTCAGATGGAGGTCTGTAACGTTACTCATAAGCATTTTCTACAATAACGTCTAAATTTTATTGCAAATTTACCAATTTGTAGAATTTGGTGACTAATTTTCTCTATAGGAGGAAGTTATAAAGAAAAAATATGGAGGAATTGTTCCCAAGAAGCCACCACTCATTTCTAAGGTGATTTTTCTCTTGTAAAAAATTGTGTATCCTTTCAGTATGGTTTTCGTTTTTCAATGAGGTCCATGCATCCTTCCACATGGGTTTCTGAAGCTTTTGAATCTCAACTTCAGGATCATGAACGTGCTTATTTTGATTCTGCTGATTGGGCATTGGGAAAGGTATGTCTATTGTATACTTATACCGCCATTTTTACTTGATCCTGAAATTAGTTCACATAACTTCACCAATTGGCTAACATATCCTCCATAATTTGGCTGACACAGCAAGGAGTCGAGAAGCCTAAAGGACCTTTAGAAGCCCTGCGGCCGAAATTACAG

mRNA sequence

ATGTCTGAGCATATCAAAGAGACGGAACGAGTGGACGGAGATGGACATGTTGGATCTGAAAAACCCATGCCATCATCTCAGATGGAGGAGGAAGTTATAAAGAAAAAATATGGAGGAATTGTTCCCAAGAAGCCACCACTCATTTCTAAGGATCATGAACGTGCTTATTTTGATTCTGCTGATTGGGCATTGGGAAAGCAAGGAGTCGAGAAGCCTAAAGGACCTTTAGAAGCCCTGCGGCCGAAATTACAG

Coding sequence (CDS)

ATGTCTGAGCATATCAAAGAGACGGAACGAGTGGACGGAGATGGACATGTTGGATCTGAAAAACCCATGCCATCATCTCAGATGGAGGAGGAAGTTATAAAGAAAAAATATGGAGGAATTGTTCCCAAGAAGCCACCACTCATTTCTAAGGATCATGAACGTGCTTATTTTGATTCTGCTGATTGGGCATTGGGAAAGCAAGGAGTCGAGAAGCCTAAAGGACCTTTAGAAGCCCTGCGGCCGAAATTACAG

Protein sequence

MSEHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSADWALGKQGVEKPKGPLEALRPKLQ

Homology

[Close]

BLAST of MS019109.1 vs. NCBI nr
Match: XP_022143267.1 (uncharacterized protein LOC111013179 [Momordica charantia])

HSP 1 Score: 175.3 bits (443), Expect = 2.3e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MSEHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60
          MSEHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA
Sbjct: 1  MSEHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60

Query: 61 DWALGKQGVEKPKGPLEALRPKLQ 85
          DWALGKQGVEKPKGPLEALRPKLQ
Sbjct: 61 DWALGKQGVEKPKGPLEALRPKLQ 84

[Close]

BLAST of MS019109.1 vs. NCBI nr
Match: XP_022984130.1 (uncharacterized protein LOC111482517 [Cucurbita maxima] >XP_022984131.1 uncharacterized protein LOC111482517 [Cucurbita maxima] >XP_022984132.1 uncharacterized protein LOC111482517 [Cucurbita maxima] >XP_022984133.1 uncharacterized protein LOC111482517 [Cucurbita maxima])

HSP 1 Score: 164.5 bits (415), Expect = 4.0e-37
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MSEHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60
          MSEHIKETER+DGDGHVGSE+ MPSS+ EEEVIKKKYGGIVPKKPPLISKDHERAYFDSA
Sbjct: 1  MSEHIKETERLDGDGHVGSEESMPSSRKEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60

Query: 61 DWALGKQGVEKPKGPLEALRPKLQ 85
          DWALGKQGVEKPKGPL+ALRPKLQ
Sbjct: 61 DWALGKQGVEKPKGPLQALRPKLQ 84

[Close]

BLAST of MS019109.1 vs. NCBI nr
Match: KAG7017958.1 (hypothetical protein SDJN02_19824, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 164.5 bits (415), Expect = 4.0e-37
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MSEHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60
          MSEHIKETER+DGDGHVGSE+ MPSS+ EEEVIKKKYGGIVPKKPPLISKDHERAYFDSA
Sbjct: 1  MSEHIKETERLDGDGHVGSEESMPSSRKEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60

Query: 61 DWALGKQGVEKPKGPLEALRPKLQ 85
          DWALGKQGVEKPKGPL+ALRPKLQ
Sbjct: 61 DWALGKQGVEKPKGPLQALRPKLQ 84

[Close]

BLAST of MS019109.1 vs. NCBI nr
Match: XP_022935662.1 (uncharacterized protein LOC111442452 [Cucurbita moschata] >XP_022935663.1 uncharacterized protein LOC111442452 [Cucurbita moschata] >XP_022935664.1 uncharacterized protein LOC111442452 [Cucurbita moschata] >XP_023526189.1 uncharacterized protein LOC111789742 isoform X2 [Cucurbita pepo subsp. pepo] >XP_023526190.1 uncharacterized protein LOC111789742 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.5 bits (415), Expect = 4.0e-37
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MSEHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60
          MSEHIKETER+DGDGHVGSE+ MPSS+ EEEVIKKKYGGIVPKKPPLISKDHERAYFDSA
Sbjct: 1  MSEHIKETERLDGDGHVGSEESMPSSRKEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60

Query: 61 DWALGKQGVEKPKGPLEALRPKLQ 85
          DWALGKQGVEKPKGPL+ALRPKLQ
Sbjct: 61 DWALGKQGVEKPKGPLQALRPKLQ 84

[Close]

BLAST of MS019109.1 vs. NCBI nr
Match: KAA0047355.1 (ribosome biogenesis protein erb1 isoform X2 [Cucumis melo var. makuwa] >TYK14033.1 ribosome biogenesis protein erb1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 161.8 bits (408), Expect = 2.6e-36
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1  MSEHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60
          MSEHIKE ERVDGDGHVGSE+ M SS+ EEEVIKKKYGGIVPKKPPLISKDHERAYFDSA
Sbjct: 1  MSEHIKEAERVDGDGHVGSEESMSSSRKEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60

Query: 61 DWALGKQGVEKPKGPLEALRPKLQ 85
          DWALGKQGVEKPKGPLEALRPKLQ
Sbjct: 61 DWALGKQGVEKPKGPLEALRPKLQ 84

[Close]

BLAST of MS019109.1 vs. ExPASy TrEMBL
Match: A0A6J1CQB0 (uncharacterized protein LOC111013179 OS=Momordica charantia OX=3673 GN=LOC111013179 PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.1e-40
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MSEHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60
          MSEHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA
Sbjct: 1  MSEHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60

Query: 61 DWALGKQGVEKPKGPLEALRPKLQ 85
          DWALGKQGVEKPKGPLEALRPKLQ
Sbjct: 61 DWALGKQGVEKPKGPLEALRPKLQ 84

[Close]

BLAST of MS019109.1 vs. ExPASy TrEMBL
Match: A0A6J1J4D2 (uncharacterized protein LOC111482517 OS=Cucurbita maxima OX=3661 GN=LOC111482517 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.0e-37
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MSEHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60
          MSEHIKETER+DGDGHVGSE+ MPSS+ EEEVIKKKYGGIVPKKPPLISKDHERAYFDSA
Sbjct: 1  MSEHIKETERLDGDGHVGSEESMPSSRKEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60

Query: 61 DWALGKQGVEKPKGPLEALRPKLQ 85
          DWALGKQGVEKPKGPL+ALRPKLQ
Sbjct: 61 DWALGKQGVEKPKGPLQALRPKLQ 84

[Close]

BLAST of MS019109.1 vs. ExPASy TrEMBL
Match: A0A6J1FB54 (uncharacterized protein LOC111442452 OS=Cucurbita moschata OX=3662 GN=LOC111442452 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.0e-37
Identity = 78/84 (92.86%), Postives = 82/84 (97.62%), Query Frame = 0


Query: 1  MSEHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60
          MSEHIKETER+DGDGHVGSE+ MPSS+ EEEVIKKKYGGIVPKKPPLISKDHERAYFDSA
Sbjct: 1  MSEHIKETERLDGDGHVGSEESMPSSRKEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60

Query: 61 DWALGKQGVEKPKGPLEALRPKLQ 85
          DWALGKQGVEKPKGPL+ALRPKLQ
Sbjct: 61 DWALGKQGVEKPKGPLQALRPKLQ 84

[Close]

BLAST of MS019109.1 vs. ExPASy TrEMBL
Match: A0A1S3C4C3 (uncharacterized protein LOC103496861 OS=Cucumis melo OX=3656 GN=LOC103496861 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1  MSEHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60
          MSEHIKE ERVDGDGHVGSE+ M SS+ EEEVIKKKYGGIVPKKPPLISKDHERAYFDSA
Sbjct: 1  MSEHIKEAERVDGDGHVGSEESMSSSRKEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60

Query: 61 DWALGKQGVEKPKGPLEALRPKLQ 85
          DWALGKQGVEKPKGPLEALRPKLQ
Sbjct: 61 DWALGKQGVEKPKGPLEALRPKLQ 84

[Close]

BLAST of MS019109.1 vs. ExPASy TrEMBL
Match: A0A5A7U139 (Ribosome biogenesis protein erb1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00010 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.3e-36
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 1  MSEHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60
          MSEHIKE ERVDGDGHVGSE+ M SS+ EEEVIKKKYGGIVPKKPPLISKDHERAYFDSA
Sbjct: 1  MSEHIKEAERVDGDGHVGSEESMSSSRKEEEVIKKKYGGIVPKKPPLISKDHERAYFDSA 60

Query: 61 DWALGKQGVEKPKGPLEALRPKLQ 85
          DWALGKQGVEKPKGPLEALRPKLQ
Sbjct: 61 DWALGKQGVEKPKGPLEALRPKLQ 84

[Close]

BLAST of MS019109.1 vs. TAIR 10
Match: AT5G64130.1 (cAMP-regulated phosphoprotein 19-related protein )

HSP 1 Score: 125.2 bits (313), Expect = 2.5e-29
Identity = 61/83 (73.49%), Postives = 69/83 (83.13%), Query Frame = 0


Query: 2  SEHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSAD 61
          +E +KE   +  +    +EK MPSSQ EE V+KKKYGG++PKKPPLISKDHERAYFDSAD
Sbjct: 4  AEDVKEQGNLTNE----AEKSMPSSQQEEAVVKKKYGGLMPKKPPLISKDHERAYFDSAD 63

Query: 62 WALGKQGVEKPKGPLEALRPKLQ 85
          WALGKQGV KPKGPLEALRPKLQ
Sbjct: 64 WALGKQGVAKPKGPLEALRPKLQ 82

[Close]

BLAST of MS019109.1 vs. TAIR 10
Match: AT5G64130.3 (cAMP-regulated phosphoprotein 19-related protein )

HSP 1 Score: 111.3 bits (277), Expect = 3.8e-25
Identity = 61/108 (56.48%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 2   SEHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISK----------- 61
           +E +KE   +  +    +EK MPSSQ EE V+KKKYGG++PKKPPLISK           
Sbjct: 4   AEDVKEQGNLTNE----AEKSMPSSQQEEAVVKKKYGGLMPKKPPLISKVSEVTGLIRDF 63

Query: 62  --------------DHERAYFDSADWALGKQGVEKPKGPLEALRPKLQ 85
                         DHERAYFDSADWALGKQGV KPKGPLEALRPKLQ
Sbjct: 64  GVSFLVFLRCVYNQDHERAYFDSADWALGKQGVAKPKGPLEALRPKLQ 107

[Close]

BLAST of MS019109.1 vs. TAIR 10
Match: AT1G69510.1 (cAMP-regulated phosphoprotein 19-related protein )

HSP 1 Score: 101.7 bits (252), Expect = 3.0e-22
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 3  EHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSADW 62
          E +K  E +D D  +   K     + EE  IKKKYGG++PKK PLISKDHERA+FDSADW
Sbjct: 2  EDVKGKEIID-DAPI-DNKVSDEMESEENAIKKKYGGLLPKKIPLISKDHERAFFDSADW 61

Query: 63 ALGKQGVEKPKGPLEALRPKLQ 85
          ALGKQ  +KPKGPLEALRPKLQ
Sbjct: 62 ALGKQKGQKPKGPLEALRPKLQ 81

[Close]

BLAST of MS019109.1 vs. TAIR 10
Match: AT1G69510.3 (cAMP-regulated phosphoprotein 19-related protein )

HSP 1 Score: 101.7 bits (252), Expect = 3.0e-22
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 3  EHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSADW 62
          E +K  E +D D  +   K     + EE  IKKKYGG++PKK PLISKDHERA+FDSADW
Sbjct: 2  EDVKGKEIID-DAPI-DNKVSDEMESEENAIKKKYGGLLPKKIPLISKDHERAFFDSADW 61

Query: 63 ALGKQGVEKPKGPLEALRPKLQ 85
          ALGKQ  +KPKGPLEALRPKLQ
Sbjct: 62 ALGKQKGQKPKGPLEALRPKLQ 81

[Close]

BLAST of MS019109.1 vs. TAIR 10
Match: AT1G69510.2 (cAMP-regulated phosphoprotein 19-related protein )

HSP 1 Score: 101.7 bits (252), Expect = 3.0e-22
Identity = 53/82 (64.63%), Postives = 61/82 (74.39%), Query Frame = 0


Query: 3  EHIKETERVDGDGHVGSEKPMPSSQMEEEVIKKKYGGIVPKKPPLISKDHERAYFDSADW 62
          E +K  E +D D  +   K     + EE  IKKKYGG++PKK PLISKDHERA+FDSADW
Sbjct: 2  EDVKGKEIID-DAPI-DNKVSDEMESEENAIKKKYGGLLPKKIPLISKDHERAFFDSADW 61

Query: 63 ALGKQGVEKPKGPLEALRPKLQ 85
          ALGKQ  +KPKGPLEALRPKLQ
Sbjct: 62 ALGKQKGQKPKGPLEALRPKLQ 81

The following BLAST results are available for this feature:

BLAST of MS019109.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143267.1	2.3e-40	100.00	uncharacterized protein LOC111013179 [Momordica charantia]	[more]
XP_022984130.1	4.0e-37	92.86	uncharacterized protein LOC111482517 [Cucurbita maxima] >XP_022984131.1 uncharac...	[more]
KAG7017958.1	4.0e-37	92.86	hypothetical protein SDJN02_19824, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022935662.1	4.0e-37	92.86	uncharacterized protein LOC111442452 [Cucurbita moschata] >XP_022935663.1 unchar...	[more]
KAA0047355.1	2.6e-36	92.86	ribosome biogenesis protein erb1 isoform X2 [Cucumis melo var. makuwa] >TYK14033...	[more]

BLAST of MS019109.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS019109.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQB0	1.1e-40	100.00	uncharacterized protein LOC111013179 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1J4D2	2.0e-37	92.86	uncharacterized protein LOC111482517 OS=Cucurbita maxima OX=3661 GN=LOC111482517...	[more]
A0A6J1FB54	2.0e-37	92.86	uncharacterized protein LOC111442452 OS=Cucurbita moschata OX=3662 GN=LOC1114424...	[more]
A0A1S3C4C3	1.3e-36	92.86	uncharacterized protein LOC103496861 OS=Cucumis melo OX=3656 GN=LOC103496861 PE=...	[more]
A0A5A7U139	1.3e-36	92.86	Ribosome biogenesis protein erb1 isoform X2 OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of MS019109.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64130.1	2.5e-29	73.49	cAMP-regulated phosphoprotein 19-related protein	[more]
AT5G64130.3	3.8e-25	56.48	cAMP-regulated phosphoprotein 19-related protein	[more]
AT1G69510.1	3.0e-22	64.63	cAMP-regulated phosphoprotein 19-related protein	[more]
AT1G69510.3	3.0e-22	64.63	cAMP-regulated phosphoprotein 19-related protein	[more]
AT1G69510.2	3.0e-22	64.63	cAMP-regulated phosphoprotein 19-related protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006760	Endosulphine	PFAM	PF04667	Endosulfine	coord: 25..84 e-value: 4.3E-20 score: 71.6
IPR006760	Endosulphine	PANTHER	PTHR10358	ENDOSULFINE	coord: 8..84
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	PANTHER	PTHR10358:SF24	CAMP-REGULATED PHOSPHOPROTEIN 19-RELATED PROTEIN	coord: 8..84

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS019109	MS019109	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS019109.1-cds	MS019109.1-cds-scaffold20:1548576..1548629	CDS
MS019109.1-cds	MS019109.1-cds-scaffold20:1548735..1548782	CDS
MS019109.1-cds	MS019109.1-cds-scaffold20:1548896..1548958	CDS
MS019109.1-cds	MS019109.1-cds-scaffold20:1549056..1549142	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS019109.1	MS019109.1-protein	polypeptide