MS019071.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS019071.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	4-coumarate--CoA ligase
Location	scaffold20: 1180284 .. 1180385 (-)
Sequence length	102
RNA-Seq Expression	MS019071.1
Synteny	MS019071.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACAACCCGGAATTCATCTTCGCCTTCCTCGGCATTTCGTACAGTGGCGTGATTAGCAGCATCGCAAACCCGCTGTACAAGCCGATGGATTTGGCGAAGCGG

mRNA sequence

AACAACCCGGAATTCATCTTCGCCTTCCTCGGCATTTCGTACAGTGGCGTGATTAGCAGCATCGCAAACCCGCTGTACAAGCCGATGGATTTGGCGAAGCGG

Coding sequence (CDS)

AACAACCCGGAATTCATCTTCGCCTTCCTCGGCATTTCGTACAGTGGCGTGATTAGCAGCATCGCAAACCCGCTGTACAAGCCGATGGATTTGGCGAAGCGG

Protein sequence

NNPEFIFAFLGISYSGVISSIANPLYKPMDLAKR

Homology

[Close]

BLAST of MS019071.1 vs. NCBI nr
Match: XP_022153289.1 (4-coumarate--CoA ligase 1-like [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 8.2e-05
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 1   NNPEFIFAFLGISYSGVISSIANPLYKPMDLAKR 35
           N+PEF+FAFLG SY G IS+ ANPLYKP ++AK+
Sbjct: 87  NSPEFVFAFLGASYGGAISTTANPLYKPAEIAKQ 120

[Close]

BLAST of MS019071.1 vs. NCBI nr
Match: XP_023546819.1 (4-coumarate--CoA ligase 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 1   NNPEFIFAFLGISYSGVISSIANPLYKPMDLAKR 35
           N+PEF+FAFLG SY+G IS+ ANPLYKP ++ K+
Sbjct: 87  NSPEFVFAFLGASYAGAISTTANPLYKPAEIKKQ 120

[Close]

BLAST of MS019071.1 vs. NCBI nr
Match: XP_022929776.1 (4-coumarate--CoA ligase 2-like [Cucurbita moschata])

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 1   NNPEFIFAFLGISYSGVISSIANPLYKPMDLAKR 35
           N+PEF+FAFLG SY+G IS+ ANPLYKP ++ K+
Sbjct: 87  NSPEFVFAFLGASYAGAISTTANPLYKPAEIKKQ 120

[Close]

BLAST of MS019071.1 vs. NCBI nr
Match: KAG6598848.1 (4-coumarate--CoA ligase 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 1   NNPEFIFAFLGISYSGVISSIANPLYKPMDLAKR 35
           N+PEF+FAFLG SY+G IS+ ANPLYKP ++ K+
Sbjct: 87  NSPEFVFAFLGASYAGAISTTANPLYKPAEIKKQ 120

[Close]

BLAST of MS019071.1 vs. NCBI nr
Match: KAG7029790.1 (4-coumarate--CoA ligase 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 54.3 bits (129), Expect = 2.4e-04
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 1   NNPEFIFAFLGISYSGVISSIANPLYKPMDLAKR 35
           N+PEF+FAFLG SY+G IS+ ANPLYKP ++ K+
Sbjct: 87  NSPEFVFAFLGASYAGAISTTANPLYKPAEIKKQ 120

[Close]

BLAST of MS019071.1 vs. ExPASy Swiss-Prot
Match: I3PB37 (4-coumarate:CoA ligase 1 OS=Petunia hybrida OX=4102 GN=4CL1 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.0e-05
Identity = 19/34 (55.88%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 1   NNPEFIFAFLGISYSGVISSIANPLYKPMDLAKR 35
           N+PEF+FAF+G SY G IS++ANPL+ P ++ K+
Sbjct: 88  NSPEFVFAFMGASYLGAISTMANPLFTPAEVVKQ 121

[Close]

BLAST of MS019071.1 vs. ExPASy Swiss-Prot
Match: O24145 (4-coumarate--CoA ligase 1 OS=Nicotiana tabacum OX=4097 GN=4CL1 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.0e-05
Identity = 19/34 (55.88%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 1   NNPEFIFAFLGISYSGVISSIANPLYKPMDLAKR 35
           N+PEF+FAF+G SY G IS++ANPL+ P ++ K+
Sbjct: 91  NSPEFVFAFMGASYLGAISTMANPLFTPAEVVKQ 124

[Close]

BLAST of MS019071.1 vs. ExPASy Swiss-Prot
Match: O24146 (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum OX=4097 GN=4CL2 PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.0e-05
Identity = 19/34 (55.88%), Postives = 28/34 (82.35%), Query Frame = 0


Query: 1   NNPEFIFAFLGISYSGVISSIANPLYKPMDLAKR 35
           N+PEF+FAF+G SY G IS++ANPL+ P ++ K+
Sbjct: 86  NSPEFVFAFIGASYLGAISTMANPLFTPAEVVKQ 119

[Close]

BLAST of MS019071.1 vs. ExPASy Swiss-Prot
Match: P31684 (4-coumarate--CoA ligase 1 OS=Solanum tuberosum OX=4113 GN=4CL1 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.9e-05
Identity = 19/34 (55.88%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 1   NNPEFIFAFLGISYSGVISSIANPLYKPMDLAKR 35
           N PEF+FAF+G SY G IS++ANPL+ P ++ K+
Sbjct: 89  NCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQ 122

[Close]

BLAST of MS019071.1 vs. ExPASy Swiss-Prot
Match: P31685 (4-coumarate--CoA ligase 2 OS=Solanum tuberosum OX=4113 GN=4CL2 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.9e-05
Identity = 19/34 (55.88%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 1   NNPEFIFAFLGISYSGVISSIANPLYKPMDLAKR 35
           N PEF+FAF+G SY G IS++ANPL+ P ++ K+
Sbjct: 89  NCPEFVFAFIGASYLGAISTMANPLFTPAEVVKQ 122

[Close]

BLAST of MS019071.1 vs. ExPASy TrEMBL
Match: A0A6J1DIM3 (4-coumarate--CoA ligase 1-like OS=Momordica charantia OX=3673 GN=LOC111020820 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.0e-05
Identity = 23/34 (67.65%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 1   NNPEFIFAFLGISYSGVISSIANPLYKPMDLAKR 35
           N+PEF+FAFLG SY G IS+ ANPLYKP ++AK+
Sbjct: 87  NSPEFVFAFLGASYGGAISTTANPLYKPAEIAKQ 120

[Close]

BLAST of MS019071.1 vs. ExPASy TrEMBL
Match: A0A6J1KB99 (4-coumarate--CoA ligase 2-like OS=Cucurbita maxima OX=3661 GN=LOC111492331 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-04
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 1   NNPEFIFAFLGISYSGVISSIANPLYKPMDLAKR 35
           N+PEF+FAFLG SY+G IS+ ANPLYKP ++ K+
Sbjct: 87  NSPEFVFAFLGASYAGAISTTANPLYKPAEIKKQ 120

[Close]

BLAST of MS019071.1 vs. ExPASy TrEMBL
Match: A0A6J1EP35 (4-coumarate--CoA ligase 2-like OS=Cucurbita moschata OX=3662 GN=LOC111436262 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-04
Identity = 22/34 (64.71%), Postives = 29/34 (85.29%), Query Frame = 0


Query: 1   NNPEFIFAFLGISYSGVISSIANPLYKPMDLAKR 35
           N+PEF+FAFLG SY+G IS+ ANPLYKP ++ K+
Sbjct: 87  NSPEFVFAFLGASYAGAISTTANPLYKPAEIKKQ 120

[Close]

BLAST of MS019071.1 vs. ExPASy TrEMBL
Match: A0A5B6Z8N7 (4-coumarate--CoA ligase (Fragment) OS=Davidia involucrata OX=16924 GN=Din_010053 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.5e-04
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 1   NNPEFIFAFLGISYSGVISSIANPLYKPMDLAKR 35
           N+PEF+FAFLG SY G IS+ ANP Y P ++AK+
Sbjct: 95  NSPEFVFAFLGASYRGAISTTANPFYTPAEIAKQ 128

[Close]

BLAST of MS019071.1 vs. ExPASy TrEMBL
Match: A0A5B6ZBX8 (4-coumarate--CoA ligase OS=Davidia involucrata OX=16924 GN=Din_010054 PE=4 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.5e-04
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 0


Query: 1   NNPEFIFAFLGISYSGVISSIANPLYKPMDLAKR 35
           N+PEF+FAFLG SY G IS+ ANP Y P ++AK+
Sbjct: 86  NSPEFVFAFLGASYRGAISTTANPFYTPAEIAKQ 119

The following BLAST results are available for this feature:

BLAST of MS019071.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153289.1	8.2e-05	67.65	4-coumarate--CoA ligase 1-like [Momordica charantia]	[more]
XP_023546819.1	2.4e-04	64.71	4-coumarate--CoA ligase 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022929776.1	2.4e-04	64.71	4-coumarate--CoA ligase 2-like [Cucurbita moschata]	[more]
KAG6598848.1	2.4e-04	64.71	4-coumarate--CoA ligase 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7029790.1	2.4e-04	64.71	4-coumarate--CoA ligase 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MS019071.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
I3PB37	1.0e-05	55.88	4-coumarate:CoA ligase 1 OS=Petunia hybrida OX=4102 GN=4CL1 PE=1 SV=1	[more]
O24145	1.0e-05	55.88	4-coumarate--CoA ligase 1 OS=Nicotiana tabacum OX=4097 GN=4CL1 PE=2 SV=1	[more]
O24146	1.0e-05	55.88	4-coumarate--CoA ligase 2 OS=Nicotiana tabacum OX=4097 GN=4CL2 PE=1 SV=1	[more]
P31684	2.9e-05	55.88	4-coumarate--CoA ligase 1 OS=Solanum tuberosum OX=4113 GN=4CL1 PE=3 SV=1	[more]
P31685	2.9e-05	55.88	4-coumarate--CoA ligase 2 OS=Solanum tuberosum OX=4113 GN=4CL2 PE=3 SV=1	[more]

BLAST of MS019071.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DIM3	4.0e-05	67.65	4-coumarate--CoA ligase 1-like OS=Momordica charantia OX=3673 GN=LOC111020820 PE...	[more]
A0A6J1KB99	1.2e-04	64.71	4-coumarate--CoA ligase 2-like OS=Cucurbita maxima OX=3661 GN=LOC111492331 PE=4 ...	[more]
A0A6J1EP35	1.2e-04	64.71	4-coumarate--CoA ligase 2-like OS=Cucurbita moschata OX=3662 GN=LOC111436262 PE=...	[more]
A0A5B6Z8N7	7.5e-04	61.76	4-coumarate--CoA ligase (Fragment) OS=Davidia involucrata OX=16924 GN=Din_010053...	[more]
A0A5B6ZBX8	7.5e-04	61.76	4-coumarate--CoA ligase OS=Davidia involucrata OX=16924 GN=Din_010054 PE=4 SV=1	[more]

BLAST of MS019071.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.50.980		coord: 1..34 e-value: 5.5E-6 score: 28.7

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS019071	MS019071	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS019071.1-cds	MS019071.1-cds-scaffold20:1180284..1180385	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS019071.1	MS019071.1-protein	polypeptide