MS018998.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS018998.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING/FYVE/PHD zinc finger superfamily protein
Location	scaffold20: 549150 .. 552458 (-)
Sequence length	678
RNA-Seq Expression	MS018998.1
Synteny	MS018998.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAGGTGATGGTGTATGTGGAAGAGTTTGATATTCAAACTCTGTACCAAAGCTGCCGCTGTAGAATTTGCCACGAAGAAGAATTCGAAACCTCCCTCCAACTCGAAGCCCCCTGTTCCTGCTCTGGAACCATTAAGGTAAATCAATTTTCAAACACCCATCAATTTCTTCTTCTTCTTCTTCTTCTTCTTCATTTTCTTTACTTTTTCTCTTGATTTTGACATTTTTCAGTTTGCTCATAGAGATTGTATTCAGAGATGGTGCACCGAGAAGGGCAGCACAGTTTGTGAAATCTGTCTCCAGGTTCCATTTTTGCCTTTTGAGTTTCTGGGTCGGTTTTTTTATGCTAAATTATTACTGGGTTTTCATTGATTTTTAATTTCTGCGTTTCTCTGTCTTCTGGATTTGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTCTATGATTTTGATCTCTGGAGCTATAAAAGTATGGAAAAAGAAGAAGAATTCTTGGGCAGTCGCGAGGAGTTCCTATTTTTCTTCGACTTCAAGTCTCTCCCTGTTCCTATAGTTGAATTTTCAAACTCCCTCATCTTTTTAGACCCTGTTTAATTGAAACCAAAAAAAAAAAAAAAAACCTATTTTGGTATTTATTAATTGGGTTTTTAATACGTTATTTTGTTAATTTATCAAATAATATATATGGAATGAAAATTAAACAAAGAATTAGAATACAACGTTGCAACAGTAGAAGGTTTTCAATTTCATACTTAAATAAATATTATTATGAATAAGTGTTTGAAGTGTTGTTCTGAATTTATTTAAATCTTTAACTCGTCCGCGTCGTGTTCTGAATTTATTATTATTACTTCTATTTTATTTTCTTTTCTCAAAATCAAGAAATAAAAATGTTTTTTTCTTTTTGGGGGCAGAATTACGAACCAGGCTATACGGCACCTTCTAAGAAGCTACAGCACGCCGATCCAGGTGTCACCATTAGGTATTTTCTTTTAATTTTTAATTTTAATTTCTCCATTTTACTTCAAATTATTTTTTTTATACACAAAAAATTCTATATGCTCCACAGTCTGTAATAGTGAGGGATGAGGAAATTTTCTTGAAGCACGAGCCTGACATGCTTTACAGCCAATTCATCTGCTCTGCTGGCGATTTTTTCCAACCTTGAGGAATTATAATTAATTTTCTCGAATATTGAGGAATTATAATTAATTAATTGCATTGAATTTATATTAATGGGGATGGAAAATTATTCGCAGGGATAGTCTGCAAATCCTGAGAACCGAGCAAGAAGAGGCGGCGCCACCGGCTTCGCCGCCCGCGGATGGCGGCGCGTCGGACTCCGCCTGCTCCACCACCGCTGACCGTGGTGCCTCCTGTTGTAAATCGGTTGCTCTCACGGTAAGTTTTCTGCCCCCCTTTTTATTAATCTTAAATCTATTAATAAAATTTTTTAGATTTAGTTGTAATTTAAATATGGGTTTAATTTTATTTTACAGTTCGATTGGTTAATTGGTTTACATTTAAATCCTGCCACTATATTTTGAATTGGTATATGAAAAAGGGAAAAAATTCAACTTTTGTGATGTTGCTTTTTTTTTCCCCTAATTAATAGTAATAGTTCACTAGTCAAATATAGAATATATTGAAATAGATTGGCGTCCAAGTACACTCCACAAAAAGCCTCAAAACTCGGACCCCAAAATGTCATAGTACTTACAAAAATAATCTTTTTTAATACAATAATGCTCTAATTTAGCCACAAATCTTAAGGTAAAAAATAAAAATAAAAAGAATAAGAAAGAAATATGAAGCTTAACTAATAGAGGATAACTATATTTGTTGGATGTTCGAATTTTTTCGAAAAAAATTTGATGGAAGATATTAATTCTACCGCTTATTTAAATTTAATGTTTAAATAGATGAAATTTAAAGGTGAAGATTAGATTTTGTTAAATTTATAGTGACAGAACATTCCATTATTAAAATATATTTTATAATTTTGAAAAAAGAAAAGAGGAAAATTTTAAATTCAATTATTAAACCAGACCTTAATTATTATGGGAGAAAAATTCAACACATGATGAGTCAAAAAGTGAAGGCTTTTATTATTTCCCTAAAGCATTAAAATGCAATAGGGCTTGAAAATTGGTGCTAAGCCCATTTACATGAACAAAGCCTGATTGTTGCATTATCATAAACAAATTAAGAGGAAAAAAAAAAAAAAAAAACTAAGTGGGTGTAACTTACCACTACATAATTGGAAGTCATTATGCCAAACACTAACTTCATTCTTTTCCCTAATTCCACCCACCATGTTAAAAAGTTCCTTTTTCTTTTCTTTTTAATATTGTTATTTAATAGATAGAACTTTTAATTTTGTGTCTAATAGATCAATAAAAAATCTCTAATAGATTCTTAAACTTTAAAAACTCTATCAATTTTGTATCTATTAGATACAAAATGGTACAAATGTTTAATTGATTCTTAAACCATCGATATTTTGTCTGAGAAGTTCATGACTTATTTGACATTTTAAATAAAATAAAAAAAAAGTTCAAATTTCTCAACCTTCCTCAATATTTTATTTTATTATTTATTTTTTCTAATTAAGTTGAATGTAGCTCACCAACCCAACAAATAACGGTTAGGGCCCTAGCAGCCTACCATTCCTTTCCTTAGCCACTTTATTATTATTTTTTTATTTTCAATTTTTTCAAAACAAATTTACCCTTTTGATACTAAGATTCCCTTGTGACTTTATAAAAAAGTTCACACTTTTTATTTTAATATATATATTTTTCTATGCAGTTTACATTAGTATTGTTGGTGAGACATTTCTATGATGTGGTTGCTGTTGGTACTGCAGACTACCCATTTACACTAGCCACTGTGAGTACCCGATCCGATTCGCCCCGTGTTCGGGAATGTTCTTTTGAGAGTAATACTAATTAAGCGTTTCGATTGTGTGTTTTTGTTTTCAGGTGCTTCTTTTAAGAGCGAGTGGAATTATTTTTCCCATGTACGTATTGATTCAAACGATCACAGCCATTCAAAACAGCATTCGTCGACATCGGTATCGGTATCGATATCAGGTGAGTTCTTTTTTTTTCAAAGCCGAGAAAAGGGTGGAAAATTAAAGTGTTTCCATGGCTGACTGAGAGTTTTGTTACTGTGTGTTTTGAATTTAGGATTCTGATGATGATGATGATATTTCAAGCTTTGAAGATGAGAGAAGGCTGCATCATATTGTC

mRNA sequence

ATGGGAGAGGTGATGGTGTATGTGGAAGAGTTTGATATTCAAACTCTGTACCAAAGCTGCCGCTGTAGAATTTGCCACGAAGAAGAATTCGAAACCTCCCTCCAACTCGAAGCCCCCTGTTCCTGCTCTGGAACCATTAAGTTTGCTCATAGAGATTGTATTCAGAGATGGTGCACCGAGAAGGGCAGCACAGTTTGTGAAATCTGTCTCCAGAATTACGAACCAGGCTATACGGCACCTTCTAAGAAGCTACAGCACGCCGATCCAGGTGTCACCATTAGGGATAGTCTGCAAATCCTGAGAACCGAGCAAGAAGAGGCGGCGCCACCGGCTTCGCCGCCCGCGGATGGCGGCGCGTCGGACTCCGCCTGCTCCACCACCGCTGACCGTGGTGCCTCCTGTTGTAAATCGGTTGCTCTCACGTTTACATTAGTATTGTTGGTGAGACATTTCTATGATGTGGTTGCTGTTGGTACTGCAGACTACCCATTTACACTAGCCACTGTGCTTCTTTTAAGAGCGAGTGGAATTATTTTTCCCATGTACGTATTGATTCAAACGATCACAGCCATTCAAAACAGCATTCGTCGACATCGGTATCGGTATCGATATCAGGATTCTGATGATGATGATGATATTTCAAGCTTTGAAGATGAGAGAAGGCTGCATCATATTGTC

Coding sequence (CDS)

ATGGGAGAGGTGATGGTGTATGTGGAAGAGTTTGATATTCAAACTCTGTACCAAAGCTGCCGCTGTAGAATTTGCCACGAAGAAGAATTCGAAACCTCCCTCCAACTCGAAGCCCCCTGTTCCTGCTCTGGAACCATTAAGTTTGCTCATAGAGATTGTATTCAGAGATGGTGCACCGAGAAGGGCAGCACAGTTTGTGAAATCTGTCTCCAGAATTACGAACCAGGCTATACGGCACCTTCTAAGAAGCTACAGCACGCCGATCCAGGTGTCACCATTAGGGATAGTCTGCAAATCCTGAGAACCGAGCAAGAAGAGGCGGCGCCACCGGCTTCGCCGCCCGCGGATGGCGGCGCGTCGGACTCCGCCTGCTCCACCACCGCTGACCGTGGTGCCTCCTGTTGTAAATCGGTTGCTCTCACGTTTACATTAGTATTGTTGGTGAGACATTTCTATGATGTGGTTGCTGTTGGTACTGCAGACTACCCATTTACACTAGCCACTGTGCTTCTTTTAAGAGCGAGTGGAATTATTTTTCCCATGTACGTATTGATTCAAACGATCACAGCCATTCAAAACAGCATTCGTCGACATCGGTATCGGTATCGATATCAGGATTCTGATGATGATGATGATATTTCAAGCTTTGAAGATGAGAGAAGGCTGCATCATATTGTC

Protein sequence

MGEVMVYVEEFDIQTLYQSCRCRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTEKGSTVCEICLQNYEPGYTAPSKKLQHADPGVTIRDSLQILRTEQEEAAPPASPPADGGASDSACSTTADRGASCCKSVALTFTLVLLVRHFYDVVAVGTADYPFTLATVLLLRASGIIFPMYVLIQTITAIQNSIRRHRYRYRYQDSDDDDDISSFEDERRLHHIV

Homology

[Close]

BLAST of MS018998.1 vs. NCBI nr
Match: XP_022155263.1 (uncharacterized protein LOC111022405, partial [Momordica charantia])

HSP 1 Score: 386.3 bits (991), Expect = 1.8e-103
Identity = 194/196 (98.98%), Postives = 194/196 (98.98%), Query Frame = 0


Query: 31  ETSLQLEAPCSCSGTIKFAHRDCIQRWCTEKGSTVCEICLQNYEPGYTAPSKKLQHADPG 90
           ETSLQLEAPCSCSGTIKFAHR CIQRWCTEKGSTVCEICLQNYEPGYTAPSKKLQHADPG
Sbjct: 1   ETSLQLEAPCSCSGTIKFAHRGCIQRWCTEKGSTVCEICLQNYEPGYTAPSKKLQHADPG 60

Query: 91  VTIRDSLQILRTEQEEAAPPASPPADGGASDSACSTTADRGASCCKSVALTFTLVLLVRH 150
           VTIRDSLQILRTEQEEAAPPASPPADGGASDSACSTTADRGASCCKSVALTFTLVLLVRH
Sbjct: 61  VTIRDSLQILRTEQEEAAPPASPPADGGASDSACSTTADRGASCCKSVALTFTLVLLVRH 120

Query: 151 FYDVVAVGTADYPFTLATVLLLRASGIIFPMYVLIQTITAIQNSIRRHRYRYRYQDSDDD 210
           FYDVVAVGTADYPFTLATVLLLRASGIIFPMYVLIQTITAIQNSIRRHRYRYRYQ SDDD
Sbjct: 121 FYDVVAVGTADYPFTLATVLLLRASGIIFPMYVLIQTITAIQNSIRRHRYRYRYQGSDDD 180

Query: 211 DDISSFEDERRLHHIV 227
           DDISSFEDERRLHHIV
Sbjct: 181 DDISSFEDERRLHHIV 196

[Close]

BLAST of MS018998.1 vs. NCBI nr
Match: XP_022984069.1 (uncharacterized protein LOC111482490 [Cucurbita maxima] >XP_022984070.1 uncharacterized protein LOC111482490 [Cucurbita maxima])

HSP 1 Score: 373.2 bits (957), Expect = 1.5e-99
Identity = 187/232 (80.60%), Postives = 205/232 (88.36%), Query Frame = 0


Query: 1   MGEVMVYVEEFDIQTLYQSCRCRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTE 60
           MGEV +YVEEF +QT YQ  RCRICHE+EFET+LQLEAPCSCSGTIKFAHRDCIQRWCTE
Sbjct: 1   MGEVSLYVEEFQLQTSYQVSRCRICHEDEFETALQLEAPCSCSGTIKFAHRDCIQRWCTE 60

Query: 61  KGSTVCEICLQNYEPGYTAPSKKLQHADPGVTIRDSLQILRTEQEEAAPPASPPADGGAS 120
           KGSTVCEICLQNYEPGYT+PSKK Q  DPGVTIRDSLQI R+E+EEAA P SPPADGGAS
Sbjct: 61  KGSTVCEICLQNYEPGYTSPSKKPQRGDPGVTIRDSLQIPRSEEEEAAEPTSPPADGGAS 120

Query: 121 DSACSTTADRGASCCKSVALTFTLVLLVRHFYDVVAVGTADYPFTLATVLLLRASGIIFP 180
           DS CSTTADRGASCCKSVALTFTL+LLVRHFY+V+ + TA YPFTLATVL+LRASGIIFP
Sbjct: 121 DSTCSTTADRGASCCKSVALTFTLMLLVRHFYEVITIDTAQYPFTLATVLILRASGIIFP 180

Query: 181 MYVLIQTITAIQNSIRRHRYRYRYQ-----DSDDDDDISSF-EDERRLHHIV 227
           MYV+I+TITAIQNS RR+RY+Y  +     D D DDDISSF ED+RR HHIV
Sbjct: 181 MYVIIRTITAIQNSARRNRYQYEDEDEEESDGDSDDDISSFEEDDRRAHHIV 232

[Close]

BLAST of MS018998.1 vs. NCBI nr
Match: XP_023529121.1 (uncharacterized protein LOC111791855 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 370.5 bits (950), Expect = 1.0e-98
Identity = 186/231 (80.52%), Postives = 202/231 (87.45%), Query Frame = 0


Query: 1   MGEVMVYVEEFDIQTLYQSCRCRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTE 60
           MGEV +YVEEF  QT YQ  RCRICHE+E ET+LQLEAPCSCSGTIKFAHRDCIQRWCTE
Sbjct: 1   MGEVSLYVEEFQFQTSYQVSRCRICHEDELETALQLEAPCSCSGTIKFAHRDCIQRWCTE 60

Query: 61  KGSTVCEICLQNYEPGYTAPSKKLQHADPGVTIRDSLQILRTEQEEAAPPASPPADGGAS 120
           KGSTVCEICLQNYEPGYT+PSKK Q  DPGVTIRDSLQI R E+EEAA PASPPADGGAS
Sbjct: 61  KGSTVCEICLQNYEPGYTSPSKKPQRGDPGVTIRDSLQIPRNEEEEAAEPASPPADGGAS 120

Query: 121 DSACSTTADRGASCCKSVALTFTLVLLVRHFYDVVAVGTADYPFTLATVLLLRASGIIFP 180
           DS CSTTADRGASCCKSVALTFTL+LLVRHFY+VV + TA YPFTLATVL+LR SGIIFP
Sbjct: 121 DSTCSTTADRGASCCKSVALTFTLMLLVRHFYEVVTIDTAQYPFTLATVLILRVSGIIFP 180

Query: 181 MYVLIQTITAIQNSIRRHRYRYRYQ-----DSDDDDDISSFEDERRLHHIV 227
           MYV+I+TITAIQNS RR+RYRY+ +     DSDDDD  S  ED+RR+HHIV
Sbjct: 181 MYVIIRTITAIQNSARRNRYRYQNEEESDVDSDDDDRSSFEEDDRRVHHIV 231

[Close]

BLAST of MS018998.1 vs. NCBI nr
Match: KAG6581297.1 (putative E3 ubiquitin ligase SUD1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 365.5 bits (937), Expect = 3.2e-97
Identity = 183/231 (79.22%), Postives = 202/231 (87.45%), Query Frame = 0


Query: 1   MGEVMVYVEEFDIQTLYQSCRCRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTE 60
           MGEV +YVEEF  QT YQ  RCRICHE+E ET+LQLEAPCSCSGTIKFAHRDCIQRWCTE
Sbjct: 1   MGEVSLYVEEFQFQTSYQVSRCRICHEDELETALQLEAPCSCSGTIKFAHRDCIQRWCTE 60

Query: 61  KGSTVCEICLQNYEPGYTAPSKKLQHADPGVTIRDSLQILRTEQEEAAPPASPPADGGAS 120
           KGSTVCEICLQNYEPGYT+PSKK Q  DPGVTIRDSLQI R E+EEAA PASPPADGGAS
Sbjct: 61  KGSTVCEICLQNYEPGYTSPSKKPQRGDPGVTIRDSLQIPRNEEEEAAEPASPPADGGAS 120

Query: 121 DSACSTTADRGASCCKSVALTFTLVLLVRHFYDVVAVGTADYPFTLATVLLLRASGIIFP 180
           DS CSTTADRGASCCKSVALTFTL+LL RHFY+VV + TA YPFTLATVL+LRASGIIFP
Sbjct: 121 DSTCSTTADRGASCCKSVALTFTLMLLARHFYEVVTIDTAQYPFTLATVLILRASGIIFP 180

Query: 181 MYVLIQTITAIQNSIRRHRYRYRYQD----SDDDDDISSF-EDERRLHHIV 227
           MYV+I+TI+ IQNS R++RYRY+ ++      DDDDIS F ED+RR+HHIV
Sbjct: 181 MYVIIRTISVIQNSARQNRYRYQNEEESDVDSDDDDISRFEEDDRRVHHIV 231

[Close]

BLAST of MS018998.1 vs. NCBI nr
Match: XP_011652953.1 (uncharacterized protein LOC101220948 isoform X1 [Cucumis sativus] >KGN52850.1 hypothetical protein Csa_015207 [Cucumis sativus])

HSP 1 Score: 364.4 bits (934), Expect = 7.2e-97
Identity = 187/232 (80.60%), Postives = 203/232 (87.50%), Query Frame = 0


Query: 1   MGEVMVYVEEFDIQTLYQSCRCRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTE 60
           M EV VYVEEF  QT Y   RCRICHEEEFE+ LQLEAPCSCSGTIKFAHRDCIQRWC+E
Sbjct: 1   MEEVFVYVEEFPFQTSYDVSRCRICHEEEFESPLQLEAPCSCSGTIKFAHRDCIQRWCSE 60

Query: 61  KGSTVCEICLQNYEPGYTAPSKKLQHAD-PGVTIRDSLQILRTEQEEAAPPASPPADGGA 120
           KGSTVCEICLQNYEPGYTAPSKK  HAD P VT+RD ++I R+E EE A PAS P D  A
Sbjct: 61  KGSTVCEICLQNYEPGYTAPSKKPHHADPPSVTLRDGVEIPRSEDEETAEPASSPDDDSA 120

Query: 121 SDSACSTTADRGASCCKSVALTFTLVLLVRHFYDVVAVGTADYPFTLATVLLLRASGIIF 180
           S SACSTTADRGASCCKSVALTFTLVLLVRHFYDVVAVGTADYPFTLATVL+LRASGIIF
Sbjct: 121 SVSACSTTADRGASCCKSVALTFTLVLLVRHFYDVVAVGTADYPFTLATVLILRASGIIF 180

Query: 181 PMYVLIQTITAIQNSIRRHRYRYRYQD----SDDDDDISSFE-DERRLHHIV 227
           PMYV+I+T+TAIQNS+RR+RY+YRY++     DDDDDISSFE D+RRLHHIV
Sbjct: 181 PMYVIIRTVTAIQNSVRRNRYQYRYRNHEDSDDDDDDISSFEDDDRRLHHIV 232

[Close]

BLAST of MS018998.1 vs. ExPASy Swiss-Prot
Match: Q0P496 (E3 ubiquitin-protein ligase MARCHF4 OS=Danio rerio OX=7955 GN=marchf4 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-07
Identity = 25/78 (32.05%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 22  CRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTEKGSTVCEICLQNYEPGYTAPS 81
           CRIC +   +   +L +PC CSG+++  H  C+ +W +E+GS  CE+C   Y+    +  
Sbjct: 143 CRICFQGPEQG--ELLSPCRCSGSVRCTHEPCLIKWISERGSWSCELCYYKYQVIAISTK 202

Query: 82  KKLQHADPGVTIRDSLQI 100
             LQ     +T+ + +QI
Sbjct: 203 NPLQWQAISLTVIEKVQI 218

[Close]

BLAST of MS018998.1 vs. ExPASy Swiss-Prot
Match: Q86YJ5 (E3 ubiquitin-protein ligase MARCHF9 OS=Homo sapiens OX=9606 GN=MARCHF9 PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 4.2e-07
Identity = 25/79 (31.65%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 21  RCRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTEKGSTVCEICLQNYEPGYTAP 80
           +CRIC +   +   +L +PC C G+++  H+ C+ RW +E+GS  CE+C   Y+    + 
Sbjct: 109 QCRICFQGPEQG--ELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAIST 168

Query: 81  SKKLQHADPGVTIRDSLQI 100
              LQ     +T+ + +QI
Sbjct: 169 KNPLQWQAISLTVIEKVQI 185

[Close]

BLAST of MS018998.1 vs. ExPASy Swiss-Prot
Match: Q3TZ87 (E3 ubiquitin-protein ligase MARCHF9 OS=Mus musculus OX=10090 GN=Marchf9 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.2e-07
Identity = 25/79 (31.65%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 21  RCRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTEKGSTVCEICLQNYEPGYTAP 80
           +CRIC +   +   +L +PC C G+++  H+ C+ RW +E+GS  CE+C   Y+    + 
Sbjct: 109 QCRICFQGPEQG--ELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAIST 168

Query: 81  SKKLQHADPGVTIRDSLQI 100
              LQ     +T+ + +QI
Sbjct: 169 KNPLQWQAISLTVIEKVQI 185

[Close]

BLAST of MS018998.1 vs. ExPASy Swiss-Prot
Match: Q32L65 (E3 ubiquitin-protein ligase MARCHF2 OS=Bos taurus OX=9913 GN=MARCHF2 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.6e-06
Identity = 25/69 (36.23%), Postives = 36/69 (52.17%), Query Frame = 0


Query: 22  CRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTEKGSTVCEICLQNYEPGYTAPS 81
           CRICHE     SL   +PC CSGT+   H+ C++RW +   ++ CE+C   +     + S
Sbjct: 64  CRICHEGANGESLL--SPCGCSGTLGAVHKSCLERWLSSSNTSYCELCHTEFAVEKRSRS 123

Query: 82  KKLQHADPG 91
                 DPG
Sbjct: 124 LTEWLKDPG 130

[Close]

BLAST of MS018998.1 vs. ExPASy Swiss-Prot
Match: Q80TE3 (E3 ubiquitin-protein ligase MARCHF4 OS=Mus musculus OX=10090 GN=Marchf4 PE=2 SV=3)

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-06
Identity = 24/78 (30.77%), Postives = 41/78 (52.56%), Query Frame = 0


Query: 22  CRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTEKGSTVCEICLQNYEPGYTAPS 81
           CRIC +   +   +L +PC C G++K  H+ C+ +W +E+G   CE+C   Y     +  
Sbjct: 162 CRICFQGPEQG--ELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAISTK 221

Query: 82  KKLQHADPGVTIRDSLQI 100
             LQ     +T+ + +QI
Sbjct: 222 NPLQWQAISLTVIEKVQI 237

[Close]

BLAST of MS018998.1 vs. ExPASy TrEMBL
Match: A0A6J1DMH6 (uncharacterized protein LOC111022405 OS=Momordica charantia OX=3673 GN=LOC111022405 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 8.5e-104
Identity = 194/196 (98.98%), Postives = 194/196 (98.98%), Query Frame = 0


Query: 31  ETSLQLEAPCSCSGTIKFAHRDCIQRWCTEKGSTVCEICLQNYEPGYTAPSKKLQHADPG 90
           ETSLQLEAPCSCSGTIKFAHR CIQRWCTEKGSTVCEICLQNYEPGYTAPSKKLQHADPG
Sbjct: 1   ETSLQLEAPCSCSGTIKFAHRGCIQRWCTEKGSTVCEICLQNYEPGYTAPSKKLQHADPG 60

Query: 91  VTIRDSLQILRTEQEEAAPPASPPADGGASDSACSTTADRGASCCKSVALTFTLVLLVRH 150
           VTIRDSLQILRTEQEEAAPPASPPADGGASDSACSTTADRGASCCKSVALTFTLVLLVRH
Sbjct: 61  VTIRDSLQILRTEQEEAAPPASPPADGGASDSACSTTADRGASCCKSVALTFTLVLLVRH 120

Query: 151 FYDVVAVGTADYPFTLATVLLLRASGIIFPMYVLIQTITAIQNSIRRHRYRYRYQDSDDD 210
           FYDVVAVGTADYPFTLATVLLLRASGIIFPMYVLIQTITAIQNSIRRHRYRYRYQ SDDD
Sbjct: 121 FYDVVAVGTADYPFTLATVLLLRASGIIFPMYVLIQTITAIQNSIRRHRYRYRYQGSDDD 180

Query: 211 DDISSFEDERRLHHIV 227
           DDISSFEDERRLHHIV
Sbjct: 181 DDISSFEDERRLHHIV 196

[Close]

BLAST of MS018998.1 vs. ExPASy TrEMBL
Match: A0A6J1J7P0 (uncharacterized protein LOC111482490 OS=Cucurbita maxima OX=3661 GN=LOC111482490 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 7.5e-100
Identity = 187/232 (80.60%), Postives = 205/232 (88.36%), Query Frame = 0


Query: 1   MGEVMVYVEEFDIQTLYQSCRCRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTE 60
           MGEV +YVEEF +QT YQ  RCRICHE+EFET+LQLEAPCSCSGTIKFAHRDCIQRWCTE
Sbjct: 1   MGEVSLYVEEFQLQTSYQVSRCRICHEDEFETALQLEAPCSCSGTIKFAHRDCIQRWCTE 60

Query: 61  KGSTVCEICLQNYEPGYTAPSKKLQHADPGVTIRDSLQILRTEQEEAAPPASPPADGGAS 120
           KGSTVCEICLQNYEPGYT+PSKK Q  DPGVTIRDSLQI R+E+EEAA P SPPADGGAS
Sbjct: 61  KGSTVCEICLQNYEPGYTSPSKKPQRGDPGVTIRDSLQIPRSEEEEAAEPTSPPADGGAS 120

Query: 121 DSACSTTADRGASCCKSVALTFTLVLLVRHFYDVVAVGTADYPFTLATVLLLRASGIIFP 180
           DS CSTTADRGASCCKSVALTFTL+LLVRHFY+V+ + TA YPFTLATVL+LRASGIIFP
Sbjct: 121 DSTCSTTADRGASCCKSVALTFTLMLLVRHFYEVITIDTAQYPFTLATVLILRASGIIFP 180

Query: 181 MYVLIQTITAIQNSIRRHRYRYRYQ-----DSDDDDDISSF-EDERRLHHIV 227
           MYV+I+TITAIQNS RR+RY+Y  +     D D DDDISSF ED+RR HHIV
Sbjct: 181 MYVIIRTITAIQNSARRNRYQYEDEDEEESDGDSDDDISSFEEDDRRAHHIV 232

[Close]

BLAST of MS018998.1 vs. ExPASy TrEMBL
Match: A0A6J1KFW1 (uncharacterized protein LOC111492856 OS=Cucurbita maxima OX=3661 GN=LOC111492856 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.5e-97
Identity = 187/230 (81.30%), Postives = 203/230 (88.26%), Query Frame = 0


Query: 1   MGEVMVYVEEFDIQTLYQSCRCRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTE 60
           MGE ++YV++F  +T Y   RCRICHEEEFE++LQLEAPC+CSGTIKFAHRDCIQRWCTE
Sbjct: 1   MGEAILYVDDFRFETSYDVSRCRICHEEEFESALQLEAPCACSGTIKFAHRDCIQRWCTE 60

Query: 61  KGSTVCEICLQNYEPGYTAPSKKLQHADPGVTIRDSLQILRTEQEEAAPPASPPADGGAS 120
           KGSTVCEICLQNYEPGYTAPSKK Q  DPGV+I D +QI R+EQEEAA PASPPAD GAS
Sbjct: 61  KGSTVCEICLQNYEPGYTAPSKKPQLGDPGVSISDGVQIPRSEQEEAAEPASPPADDGAS 120

Query: 121 DSACSTTADRGASCCKSVALTFTLVLLVRHFYDVVAVGTADYPFTLATVLLLRASGIIFP 180
           DSACSTT DRGAS CKSVALTFTLVLLVRHFYDV+AVG  DYPFTLATVLLLRASGIIFP
Sbjct: 121 DSACSTTTDRGASYCKSVALTFTLVLLVRHFYDVLAVGAGDYPFTLATVLLLRASGIIFP 180

Query: 181 MYVLIQTITAIQNSIRRHRYRYRY--QDSDD-DDDISSFE-DERRLHHIV 227
           MYV+I+ IT +Q +IRR RYRYRY  QDSDD DDDISSFE DERRLHHIV
Sbjct: 181 MYVIIRAITTVQYNIRRSRYRYRYRDQDSDDEDDDISSFEDDERRLHHIV 230

[Close]

BLAST of MS018998.1 vs. ExPASy TrEMBL
Match: A0A0A0KT99 (RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G003640 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 3.5e-97
Identity = 187/232 (80.60%), Postives = 203/232 (87.50%), Query Frame = 0


Query: 1   MGEVMVYVEEFDIQTLYQSCRCRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTE 60
           M EV VYVEEF  QT Y   RCRICHEEEFE+ LQLEAPCSCSGTIKFAHRDCIQRWC+E
Sbjct: 1   MEEVFVYVEEFPFQTSYDVSRCRICHEEEFESPLQLEAPCSCSGTIKFAHRDCIQRWCSE 60

Query: 61  KGSTVCEICLQNYEPGYTAPSKKLQHAD-PGVTIRDSLQILRTEQEEAAPPASPPADGGA 120
           KGSTVCEICLQNYEPGYTAPSKK  HAD P VT+RD ++I R+E EE A PAS P D  A
Sbjct: 61  KGSTVCEICLQNYEPGYTAPSKKPHHADPPSVTLRDGVEIPRSEDEETAEPASSPDDDSA 120

Query: 121 SDSACSTTADRGASCCKSVALTFTLVLLVRHFYDVVAVGTADYPFTLATVLLLRASGIIF 180
           S SACSTTADRGASCCKSVALTFTLVLLVRHFYDVVAVGTADYPFTLATVL+LRASGIIF
Sbjct: 121 SVSACSTTADRGASCCKSVALTFTLVLLVRHFYDVVAVGTADYPFTLATVLILRASGIIF 180

Query: 181 PMYVLIQTITAIQNSIRRHRYRYRYQD----SDDDDDISSFE-DERRLHHIV 227
           PMYV+I+T+TAIQNS+RR+RY+YRY++     DDDDDISSFE D+RRLHHIV
Sbjct: 181 PMYVIIRTVTAIQNSVRRNRYQYRYRNHEDSDDDDDDISSFEDDDRRLHHIV 232

[Close]

BLAST of MS018998.1 vs. ExPASy TrEMBL
Match: A0A6J1F9U4 (uncharacterized protein LOC111442137 OS=Cucurbita moschata OX=3662 GN=LOC111442137 PE=4 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 1.0e-96
Identity = 181/231 (78.35%), Postives = 201/231 (87.01%), Query Frame = 0


Query: 1   MGEVMVYVEEFDIQTLYQSCRCRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTE 60
           MG+V +YVEEF  QT YQ  RCRICHE+E ET+LQLEAPCSCSGTIKFAHRDCIQRWCTE
Sbjct: 1   MGQVSLYVEEFQFQTSYQVSRCRICHEDELETALQLEAPCSCSGTIKFAHRDCIQRWCTE 60

Query: 61  KGSTVCEICLQNYEPGYTAPSKKLQHADPGVTIRDSLQILRTEQEEAAPPASPPADGGAS 120
           KGSTVCEICLQNYEPGYT+PSKK Q  DPGVTIRDSLQI R E+EEAA PASPPADGGAS
Sbjct: 61  KGSTVCEICLQNYEPGYTSPSKKPQRGDPGVTIRDSLQIPRNEEEEAAEPASPPADGGAS 120

Query: 121 DSACSTTADRGASCCKSVALTFTLVLLVRHFYDVVAVGTADYPFTLATVLLLRASGIIFP 180
           DS CSTT DRGASCCKSVALTFTL+LL RHFY+VV + TA YPFTLATVL+LRASGIIFP
Sbjct: 121 DSTCSTTTDRGASCCKSVALTFTLMLLARHFYEVVTIDTAQYPFTLATVLILRASGIIFP 180

Query: 181 MYVLIQTITAIQNSIRRHRYRYRYQD----SDDDDDISSF-EDERRLHHIV 227
           MYV+I+TI+ IQNS R++RYRY+ ++      DDDDIS F ED+RR+HHIV
Sbjct: 181 MYVIIRTISVIQNSARQNRYRYQNEEESDVDSDDDDISRFEEDDRRVHHIV 231

[Close]

BLAST of MS018998.1 vs. TAIR 10
Match: AT1G02610.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 201.8 bits (512), Expect = 5.7e-52
Identity = 108/219 (49.32%), Postives = 149/219 (68.04%), Query Frame = 0


Query: 1   MGEVMVYVEEFDIQTLYQSCRCRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTE 60
           MG+V+++++E  +++ +   RCRICHEEE E+    EAPCSCSGTIKFAHRDCIQRWC E
Sbjct: 1   MGDVVLFIDETYLKSSFN--RCRICHEEEAES--YFEAPCSCSGTIKFAHRDCIQRWCDE 60

Query: 61  KGSTVCEICLQNYEPGYTAPSKKLQHADPGVTIRDSLQILRTEQEEAAPPASPPADGGAS 120
           KG+T+CEICLQ Y+PGYT  SK  +  +  VTIRD+L I+R E               + 
Sbjct: 61  KGNTICEICLQEYKPGYTTTSKPSRFIETAVTIRDNLHIMRRENGRRRRNRRLVNREESD 120

Query: 121 DSACSTTADRGASCCKSVALTFTLVLLVRHFYDVVAVGTADYPFTLATVLLLRASGIIFP 180
              C++  DRGASCC+ +AL F+++LL++H +D V  GT +YP+T+ TVL L+A GI+ P
Sbjct: 121 FQECNSGVDRGASCCRYLALIFSVILLIKHAFDAV-YGTEEYPYTIFTVLTLKAIGILLP 180

Query: 181 MYVLIQTITAIQNSIRRHRYRYRYQDSDDDDDISSFEDE 220
           M V+I+TITAIQ S+       RYQ  + ++D  S E+E
Sbjct: 181 MLVIIRTITAIQRSL-------RYQILESEEDTLSSEEE 207

[Close]

BLAST of MS018998.1 vs. TAIR 10
Match: AT4G02075.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 182.6 bits (462), Expect = 3.6e-46
Identity = 101/228 (44.30%), Postives = 153/228 (67.11%), Query Frame = 0


Query: 1   MGEVMVYVEEFDIQTLYQSCRCRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTE 60
           MG+V+++++  D ++  +  RCRICHEEE E+    E PC+CSGT+KFAHR+CIQRWC E
Sbjct: 1   MGDVILFID--DTKSKVRITRCRICHEEEEESF--FEVPCACSGTVKFAHRNCIQRWCNE 60

Query: 61  KGSTVCEICLQNYEPGYTAPSKKLQHADPGVTIRDSLQILRTEQEEAAPPASPPADGGAS 120
           KG+T CEICLQ Y+ GYTA  K+ +  +  VTIR + +  R  +   +   S        
Sbjct: 61  KGNTTCEICLQVYKDGYTAVLKQSKLIEQEVTIRVNGRRRRRSRRLVSIAES-------D 120

Query: 121 DSACSTTADRGASCCKSVALTFTLVLLVRHFYDVVAVGTADYPFTLATVLLLRASGIIFP 180
            S C++ ADRGAS C+S+  T ++ LL++H +DV+  GT +YPF++ TVL L+A GI+ P
Sbjct: 121 ISQCNSVADRGASFCRSLTFTLSVFLLMKHTFDVI-YGTEEYPFSVFTVLTLKAIGILLP 180

Query: 181 MYVLIQTITAIQNSI-RRHRYRYRYQD----SDDDDDISSFEDERRLH 224
           M+++I+TI+ IQ ++ RRH+Y    ++    SDDDDD+   ++E++ H
Sbjct: 181 MFIIIRTISTIQKTLRRRHQYPESEEEDRLSSDDDDDLEEEDEEQQQH 216

[Close]

BLAST of MS018998.1 vs. TAIR 10
Match: AT2G01275.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 126.3 bits (316), Expect = 3.1e-29
Identity = 73/191 (38.22%), Postives = 105/191 (54.97%), Query Frame = 0


Query: 22  CRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTEKGSTVCEICLQNYEPGYTAPS 81
           CRICH+E+ +++  +E PCSCSG++K+AHR C+QRWC EKG T CEIC Q ++P YTAP 
Sbjct: 59  CRICHDEDLDSN--METPCSCSGSVKYAHRRCVQRWCNEKGDTTCEICHQEFKPDYTAPP 118

Query: 82  KKLQHADPGVTIRDSLQILRTEQEEAAPPASPPADGGASDSACSTTADRGASCCKSVALT 141
             L+     +  R +  I    Q E       PAD    D     ++     CC+S+ L 
Sbjct: 119 PLLELGHVPLHFRGNWGI---SQREHRFITVVPADSTFIDQPYPLSSTTSFICCRSLVLI 178

Query: 142 FTLVLLVRHFYDVVAVGTADYPFTLATVLLLRASGIIFPMYVLIQTITAIQNSIRRHRYR 201
           F  +L++RH   +V  G+  + F L T+L LR  GI+ P+YV+ + +     + RRH   
Sbjct: 179 FMALLILRHTLPLVLTGSNLHVFPLFTLLFLRILGIMLPIYVVTKAVA----TCRRHSRT 238

Query: 202 YRYQDSDDDDD 213
                SDD  D
Sbjct: 239 LDTSPSDDSSD 240

[Close]

BLAST of MS018998.1 vs. TAIR 10
Match: AT2G01275.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 126.3 bits (316), Expect = 3.1e-29
Identity = 73/191 (38.22%), Postives = 105/191 (54.97%), Query Frame = 0


Query: 22  CRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTEKGSTVCEICLQNYEPGYTAPS 81
           CRICH+E+ +++  +E PCSCSG++K+AHR C+QRWC EKG T CEIC Q ++P YTAP 
Sbjct: 59  CRICHDEDLDSN--METPCSCSGSVKYAHRRCVQRWCNEKGDTTCEICHQEFKPDYTAPP 118

Query: 82  KKLQHADPGVTIRDSLQILRTEQEEAAPPASPPADGGASDSACSTTADRGASCCKSVALT 141
             L+     +  R +  I    Q E       PAD    D     ++     CC+S+ L 
Sbjct: 119 PLLELGHVPLHFRGNWGI---SQREHRFITVVPADSTFIDQPYPLSSTTSFICCRSLVLI 178

Query: 142 FTLVLLVRHFYDVVAVGTADYPFTLATVLLLRASGIIFPMYVLIQTITAIQNSIRRHRYR 201
           F  +L++RH   +V  G+  + F L T+L LR  GI+ P+YV+ + +     + RRH   
Sbjct: 179 FMALLILRHTLPLVLTGSNLHVFPLFTLLFLRILGIMLPIYVVTKAVA----TCRRHSRT 238

Query: 202 YRYQDSDDDDD 213
                SDD  D
Sbjct: 239 LDTSPSDDSSD 240

[Close]

BLAST of MS018998.1 vs. TAIR 10
Match: AT5G38070.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 121.7 bits (304), Expect = 7.5e-28
Identity = 69/190 (36.32%), Postives = 99/190 (52.11%), Query Frame = 0


Query: 21  RCRICHEEEFETSLQLEAPCSCSGTIKFAHRDCIQRWCTEKGSTVCEICLQNYEPGYTAP 80
           +CRICH+E+ +T+  ++ PCSCSGT+KFAH +C+QRWC EKG TVCEIC Q Y+PGYTAP
Sbjct: 53  QCRICHDEDEDTN--MDTPCSCSGTLKFAHHNCVQRWCNEKGDTVCEICRQQYKPGYTAP 112

Query: 81  SKKLQHADPGVTIRDSLQILRTEQEEAAPPASPPADGGASDSACSTTADRGASCCKSVAL 140
            +   +    +       I   +     P      D        S  +     CC+ +AL
Sbjct: 113 RQLFHYTGISMNFGSDWGIEGLDLRN--PYFLTWGDADDDHDLYSFHSPTSLICCRLIAL 172

Query: 141 TFTLVLLVRHFYDVVAVGTADYPFTLATVLLLRASGIIFPMYVLIQTITAIQNSIRRHRY 200
            F L+L +RH   V+  G  D+  TL  + L+R  GI+   YV  ++   IQ   +    
Sbjct: 173 LFVLLLFLRHSLPVLLGGVDDFSITLLMLPLVRTLGILLIAYVFFKSFIVIQRCRQERDT 232

Query: 201 RYRYQDSDDD 211
           R     SD++
Sbjct: 233 RLSGFSSDEE 238

The following BLAST results are available for this feature:

BLAST of MS018998.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155263.1	1.8e-103	98.98	uncharacterized protein LOC111022405, partial [Momordica charantia]	[more]
XP_022984069.1	1.5e-99	80.60	uncharacterized protein LOC111482490 [Cucurbita maxima] >XP_022984070.1 uncharac...	[more]
XP_023529121.1	1.0e-98	80.52	uncharacterized protein LOC111791855 [Cucurbita pepo subsp. pepo]	[more]
KAG6581297.1	3.2e-97	79.22	putative E3 ubiquitin ligase SUD1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011652953.1	7.2e-97	80.60	uncharacterized protein LOC101220948 isoform X1 [Cucumis sativus] >KGN52850.1 hy...	[more]

BLAST of MS018998.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0P496	3.2e-07	32.05	E3 ubiquitin-protein ligase MARCHF4 OS=Danio rerio OX=7955 GN=marchf4 PE=2 SV=1	[more]
Q86YJ5	4.2e-07	31.65	E3 ubiquitin-protein ligase MARCHF9 OS=Homo sapiens OX=9606 GN=MARCHF9 PE=1 SV=2	[more]
Q3TZ87	4.2e-07	31.65	E3 ubiquitin-protein ligase MARCHF9 OS=Mus musculus OX=10090 GN=Marchf9 PE=2 SV=...	[more]
Q32L65	1.6e-06	36.23	E3 ubiquitin-protein ligase MARCHF2 OS=Bos taurus OX=9913 GN=MARCHF2 PE=2 SV=1	[more]
Q80TE3	2.1e-06	30.77	E3 ubiquitin-protein ligase MARCHF4 OS=Mus musculus OX=10090 GN=Marchf4 PE=2 SV=...	[more]

BLAST of MS018998.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DMH6	8.5e-104	98.98	uncharacterized protein LOC111022405 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1J7P0	7.5e-100	80.60	uncharacterized protein LOC111482490 OS=Cucurbita maxima OX=3661 GN=LOC111482490...	[more]
A0A6J1KFW1	3.5e-97	81.30	uncharacterized protein LOC111492856 OS=Cucurbita maxima OX=3661 GN=LOC111492856...	[more]
A0A0A0KT99	3.5e-97	80.60	RING-CH-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G00364...	[more]
A0A6J1F9U4	1.0e-96	78.35	uncharacterized protein LOC111442137 OS=Cucurbita moschata OX=3662 GN=LOC1114421...	[more]

BLAST of MS018998.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02610.1	5.7e-52	49.32	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT4G02075.1	3.6e-46	44.30	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G01275.1	3.1e-29	38.22	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G01275.2	3.1e-29	38.22	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G38070.1	7.5e-28	36.32	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 21..70 e-value: 2.3E-17 score: 73.7
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 22..69 e-value: 1.3E-13 score: 50.8
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 14..76 score: 20.857616
IPR022143	Protein of unknown function DUF3675	PFAM	PF12428	DUF3675	coord: 75..188 e-value: 2.0E-28 score: 99.3
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 12..80 e-value: 1.0E-17 score: 65.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..123
None	No IPR available	PANTHER	PTHR23012:SF167	AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED	coord: 1..214
None	No IPR available	CDD	cd16495	RING_CH-C4HC3_MARCH	coord: 22..69 e-value: 3.3784E-17 score: 70.8192
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 19..74
IPR033275	E3 ubiquitin-protein ligase MARCH-like	PANTHER	PTHR23012	RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING	coord: 1..214

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS018998	MS018998	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS018998.1-cds	MS018998.1-cds-scaffold20:549150..549212	CDS
MS018998.1-cds	MS018998.1-cds-scaffold20:549309..549419	CDS
MS018998.1-cds	MS018998.1-cds-scaffold20:549512..549592	CDS
MS018998.1-cds	MS018998.1-cds-scaffold20:551003..551144	CDS
MS018998.1-cds	MS018998.1-cds-scaffold20:551422..551489	CDS
MS018998.1-cds	MS018998.1-cds-scaffold20:552152..552223	CDS
MS018998.1-cds	MS018998.1-cds-scaffold20:552318..552458	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS018998.1	MS018998.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding