MS018952.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS018952.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold20: 169311 .. 169742 (+)
Sequence length	432
RNA-Seq Expression	MS018952.1
Synteny	MS018952.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGCTCCAGCAAGAGGAAGAGGATCGAGAATGACGACGGATCAGACAATGGCAGCGATGAGGCGGACATCGAGAGATTCAGCGAGATCGTCGAGAAATTCCGCGGTCCGTACGACTGGTTTAGGGCTAAAATGTCCGATTCCGCCATGGATTTGCTTCGCACTGATACGAATCGCGACGATCGGAGGCAGAGGAAGAAGAAGGAGAAGGCAATTGAAGACGATCCGAAGCGAGCCGACGTTTGGATGCCGTGTTTCCTCCTGGAAGATTTCGAAGAGGAGGAGGTGATCAAGTTCCGGAAATCGACGCCGCTGCGGAGATCGGAGACGGCGGCGGCGGCGGCGGAGGATTTAGTAACGATCGGCGGCGGAGGCGGAGGCGTGGAGAAGAAGGCGAATTGCGAAGAGTTAGACCTCCGACTCTCTCTT

mRNA sequence

ATGGAGAGCTCCAGCAAGAGGAAGAGGATCGAGAATGACGACGGATCAGACAATGGCAGCGATGAGGCGGACATCGAGAGATTCAGCGAGATCGTCGAGAAATTCCGCGGTCCGTACGACTGGTTTAGGGCTAAAATGTCCGATTCCGCCATGGATTTGCTTCGCACTGATACGAATCGCGACGATCGGAGGCAGAGGAAGAAGAAGGAGAAGGCAATTGAAGACGATCCGAAGCGAGCCGACGTTTGGATGCCGTGTTTCCTCCTGGAAGATTTCGAAGAGGAGGAGGTGATCAAGTTCCGGAAATCGACGCCGCTGCGGAGATCGGAGACGGCGGCGGCGGCGGCGGAGGATTTAGTAACGATCGGCGGCGGAGGCGGAGGCGTGGAGAAGAAGGCGAATTGCGAAGAGTTAGACCTCCGACTCTCTCTT

Coding sequence (CDS)

ATGGAGAGCTCCAGCAAGAGGAAGAGGATCGAGAATGACGACGGATCAGACAATGGCAGCGATGAGGCGGACATCGAGAGATTCAGCGAGATCGTCGAGAAATTCCGCGGTCCGTACGACTGGTTTAGGGCTAAAATGTCCGATTCCGCCATGGATTTGCTTCGCACTGATACGAATCGCGACGATCGGAGGCAGAGGAAGAAGAAGGAGAAGGCAATTGAAGACGATCCGAAGCGAGCCGACGTTTGGATGCCGTGTTTCCTCCTGGAAGATTTCGAAGAGGAGGAGGTGATCAAGTTCCGGAAATCGACGCCGCTGCGGAGATCGGAGACGGCGGCGGCGGCGGCGGAGGATTTAGTAACGATCGGCGGCGGAGGCGGAGGCGTGGAGAAGAAGGCGAATTGCGAAGAGTTAGACCTCCGACTCTCTCTT

Protein sequence

MESSSKRKRIENDDGSDNGSDEADIERFSEIVEKFRGPYDWFRAKMSDSAMDLLRTDTNRDDRRQRKKKEKAIEDDPKRADVWMPCFLLEDFEEEEVIKFRKSTPLRRSETAAAAAEDLVTIGGGGGGVEKKANCEELDLRLSL

Homology

[Close]

BLAST of MS018952.1 vs. NCBI nr
Match: KAG6606917.1 (hypothetical protein SDJN03_00259, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 151.4 bits (381), Expect = 6.1e-33
Identity = 89/144 (61.81%), Postives = 99/144 (68.75%), Query Frame = 0


Query: 1   MESSSKRKRIENDDGSDNGSDEADIERFSEIVEKFRGPYDWFRAKMSDSAMDLLRTDTNR 60
           ME S KRKR EN DG+ N SDEAD+E+F EIVEKFR PYDWFRAKMS S  +        
Sbjct: 1   MEDSGKRKRKEN-DGNRNESDEADVEKFMEIVEKFRAPYDWFRAKMSGSVAN------GE 60

Query: 61  DDRRQRKKKEKAIEDDPKRADVWMPCFLLEDFEEEEVIKFRKSTPLRRSETAAAAAEDLV 120
           D R ++KKK+K +EDD KR DVWMP FLLEDFEEEEVIKF KST LR+SET A A     
Sbjct: 61  DQRMKKKKKKKIVEDDSKRGDVWMPFFLLEDFEEEEVIKFWKSTALRKSETTATATAATT 120

Query: 121 TIGGGGGGVEKKANCEELDLRLSL 145
                 GG E+K N E LDLRL L
Sbjct: 121 M----DGGSEEKENNEGLDLRLCL 133

[Close]

BLAST of MS018952.1 vs. NCBI nr
Match: KGN58537.1 (hypothetical protein Csa_002705 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-20
Identity = 71/146 (48.63%), Postives = 93/146 (63.70%), Query Frame = 0


Query: 1   MESSSKRKRIENDDGSDNGSDEADIERFSEIVEKFRGPYDWFRAKMSDSAMDLLRTDTNR 60
           M+ S KRKR +N     N ++E +I++FSEIVEKFR PY+WFRA+MS  +        N 
Sbjct: 1   MDISGKRKRNDN-----NQNEEDEIQKFSEIVEKFRAPYNWFRARMSTHS---AAATHNG 60

Query: 61  DDRRQRKKKEKAI--EDDPKRADVWMPCFLLEDFEEEEVIKFRKSTPLRRSETAAAAAED 120
            DR+++KKK      ++D    DVWMPCFLL+DFEEEEVIK  K+  + R ETA  AAE 
Sbjct: 61  GDRKKKKKKPSGSGEDEDDDDDDVWMPCFLLQDFEEEEVIKSWKARAVPRPETAGPAAE- 120

Query: 121 LVTIGGGGGGVEKKANCEELDLRLSL 145
             ++ GG    EK    E+L+LRLSL
Sbjct: 121 FESVDGGRVEGEKGKKEEKLNLRLSL 137

[Close]

BLAST of MS018952.1 vs. NCBI nr
Match: KAG6581317.1 (hypothetical protein SDJN03_21319, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.8 bits (255), Expect = 2.5e-18
Identity = 67/147 (45.58%), Postives = 90/147 (61.22%), Query Frame = 0


Query: 1   MESSSKRKRIENDDGSDNGSDEADIERFSEIVEKFRGPYDWFRAKMSDSAMDLLRTDTNR 60
           ME S KRKR E+D      SD+ +IE+FSEIV+ FR PY+WFRAK++ S       D N+
Sbjct: 1   MEISGKRKRKESD---RIDSDDTEIEKFSEIVDNFRAPYNWFRAKITGSGSLTNGHDLNK 60

Query: 61  DDRRQRKKKEKAIEDDPKRADVWMPCFLLEDFEEEEVIKFRKSTPLRRSET---AAAAAE 120
           + +   +   + ++       VWMPCFL+EDFEE+EVIK  K+  L +S+T   AAAAA 
Sbjct: 61  NHKIVHRDSNRGVD------GVWMPCFLVEDFEEQEVIKSWKARALPKSQTADPAAAAAA 120

Query: 121 DLVTIGGGGGGVEKKANCEELDLRLSL 145
                  GG   +KK + +ELDLRLSL
Sbjct: 121 AAFEAIDGGEEAKKKDDHKELDLRLSL 138

[Close]

BLAST of MS018952.1 vs. ExPASy TrEMBL
Match: A0A0A0LCY6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G665100 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 7.5e-21
Identity = 71/146 (48.63%), Postives = 93/146 (63.70%), Query Frame = 0


Query: 1   MESSSKRKRIENDDGSDNGSDEADIERFSEIVEKFRGPYDWFRAKMSDSAMDLLRTDTNR 60
           M+ S KRKR +N     N ++E +I++FSEIVEKFR PY+WFRA+MS  +        N 
Sbjct: 1   MDISGKRKRNDN-----NQNEEDEIQKFSEIVEKFRAPYNWFRARMSTHS---AAATHNG 60

Query: 61  DDRRQRKKKEKAI--EDDPKRADVWMPCFLLEDFEEEEVIKFRKSTPLRRSETAAAAAED 120
            DR+++KKK      ++D    DVWMPCFLL+DFEEEEVIK  K+  + R ETA  AAE 
Sbjct: 61  GDRKKKKKKPSGSGEDEDDDDDDVWMPCFLLQDFEEEEVIKSWKARAVPRPETAGPAAE- 120

Query: 121 LVTIGGGGGGVEKKANCEELDLRLSL 145
             ++ GG    EK    E+L+LRLSL
Sbjct: 121 FESVDGGRVEGEKGKKEEKLNLRLSL 137

The following BLAST results are available for this feature:

BLAST of MS018952.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6606917.1	6.1e-33	61.81	hypothetical protein SDJN03_00259, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KGN58537.1	1.6e-20	48.63	hypothetical protein Csa_002705 [Cucumis sativus]	[more]
KAG6581317.1	2.5e-18	45.58	hypothetical protein SDJN03_21319, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS018952.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS018952.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCY6	7.5e-21	48.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G665100 PE=4 SV=1	[more]

BLAST of MS018952.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..76
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS018952	MS018952	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS018952.1-cds	MS018952.1-cds-scaffold20:169311..169742	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS018952.1	MS018952.1-protein	polypeptide