MS018856.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS018856.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	homeobox protein knotted-1-like 1
Location	scaffold14: 464294 .. 464458 (+)
Sequence length	165
RNA-Seq Expression	MS018856.1
Synteny	MS018856.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTCAAATGGAGTCTGATCTGAGCAATTCTACAGAAGAAGAACAAAAAGTGCTACAAGATGAAGAGGAAAAAGAAGGCTGGGAAGGGGAAATTCTGCGGAGGAGAATTTCCAGCCACCCTTTATACGGGCTATTAGTTGAAACTCACCTCAACTGTTTGAAGGTG

mRNA sequence

GCTCAAATGGAGTCTGATCTGAGCAATTCTACAGAAGAAGAACAAAAAGTGCTACAAGATGAAGAGGAAAAAGAAGGCTGGGAAGGGGAAATTCTGCGGAGGAGAATTTCCAGCCACCCTTTATACGGGCTATTAGTTGAAACTCACCTCAACTGTTTGAAGGTG

Coding sequence (CDS)

GCTCAAATGGAGTCTGATCTGAGCAATTCTACAGAAGAAGAACAAAAAGTGCTACAAGATGAAGAGGAAAAAGAAGGCTGGGAAGGGGAAATTCTGCGGAGGAGAATTTCCAGCCACCCTTTATACGGGCTATTAGTTGAAACTCACCTCAACTGTTTGAAGGTG

Protein sequence

AQMESDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV

Homology

[Close]

BLAST of MS018856.1 vs. NCBI nr
Match: XP_022137557.1 (protein KNATM [Momordica charantia])

HSP 1 Score: 102.4 bits (254), Expect = 1.2e-18
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 3  MESDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV 56
          MESDLSNSTE EQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV
Sbjct: 1  MESDLSNSTEGEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV 53

[Close]

BLAST of MS018856.1 vs. NCBI nr
Match: XP_038896017.1 (homeobox protein knotted-1-like 2 [Benincasa hispida])

HSP 1 Score: 63.9 bits (154), Expect = 4.9e-07
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 0


Query: 3  MESDLSNSTEEEQ----KVLQDEEEKE-GWEGEILRRRISSHPLYGLLVETHLNCLKV 56
          MES+ +  TEE Q    K L+DE E+E GWEGE+LR +IS+HPLY LLVETHLNCLKV
Sbjct: 1  MESE-NGCTEERQEPELKGLEDENEEEGGWEGEMLRTKISNHPLYSLLVETHLNCLKV 57

[Close]

BLAST of MS018856.1 vs. NCBI nr
Match: KAG7028461.1 (Homeobox protein knotted-1-like 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 63.5 bits (153), Expect = 6.4e-07
Identity = 33/51 (64.71%), Postives = 43/51 (84.31%), Query Frame = 0


Query: 8  SNSTEEEQKV---LQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV 56
          ++ST++  +V   L+ EEE +G +GE+LRRRISSHPLYGLL+ETHLNCLKV
Sbjct: 5  NHSTDQPLRVQLQLKHEEEDDGVDGEMLRRRISSHPLYGLLLETHLNCLKV 55

[Close]

BLAST of MS018856.1 vs. NCBI nr
Match: KAG6596993.1 (Homeobox protein knotted-1-like 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 8  SNSTEEEQKV---LQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV 56
          ++ST++  +V   L+ EEE +G +G+ LRRRISSHPLYGLL+ETHLNCLKV
Sbjct: 5  NHSTDQPLRVQLQLKHEEEDDGVDGDTLRRRISSHPLYGLLLETHLNCLKV 55

[Close]

BLAST of MS018856.1 vs. NCBI nr
Match: XP_022945492.1 (homeobox protein KNOX3 [Cucurbita moschata])

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 8  SNSTEEEQKV---LQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV 56
          ++ST++  +V   L+ EEE +G +G+ LRRRISSHPLYGLL+ETHLNCLKV
Sbjct: 5  NHSTDQPLRVQLQLKHEEEDDGVDGDTLRRRISSHPLYGLLLETHLNCLKV 55

[Close]

BLAST of MS018856.1 vs. ExPASy Swiss-Prot
Match: F4HXU3 (Protein KNATM OS=Arabidopsis thaliana OX=3702 GN=KNATM PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 9.5e-06
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 5  SDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV 56
          S L N  +E    L++E ++   E EIL++RISSHPLYGLL+ +HLNCLKV
Sbjct: 9  SILENMKQEINHSLKEEAQE---EEEILKKRISSHPLYGLLLHSHLNCLKV 56

[Close]

BLAST of MS018856.1 vs. ExPASy TrEMBL
Match: A0A6J1C8K6 (protein KNATM OS=Momordica charantia OX=3673 GN=LOC111008979 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 6.0e-19
Identity = 52/53 (98.11%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 3  MESDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV 56
          MESDLSNSTE EQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV
Sbjct: 1  MESDLSNSTEGEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV 53

[Close]

BLAST of MS018856.1 vs. ExPASy TrEMBL
Match: A0A6J1G133 (homeobox protein KNOX3 OS=Cucurbita moschata OX=3662 GN=LOC111449708 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.2e-06
Identity = 32/51 (62.75%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 8  SNSTEEEQKV---LQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV 56
          ++ST++  +V   L+ EEE +G +G+ LRRRISSHPLYGLL+ETHLNCLKV
Sbjct: 5  NHSTDQPLRVQLQLKHEEEDDGVDGDTLRRRISSHPLYGLLLETHLNCLKV 55

[Close]

BLAST of MS018856.1 vs. ExPASy TrEMBL
Match: V7C3D2 (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_004G148100g PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.5e-06
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 3  MESDLSNSTEEEQKVLQ---DEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV 56
          MES+  N+T E  K LQ   D++E+E    EIL+RRISSHPLYGLLVE HL+CLKV
Sbjct: 1  MESERPNTTIETYKELQQQEDDDEEEEKNNEILKRRISSHPLYGLLVEAHLDCLKV 56

[Close]

BLAST of MS018856.1 vs. ExPASy TrEMBL
Match: A0A6J1IFV6 (homeobox protein KNOX3-like OS=Cucurbita maxima OX=3661 GN=LOC111472956 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.8e-06
Identity = 31/51 (60.78%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 6  DLSNSTEEEQKVLQDEEEKEGWE-GEILRRRISSHPLYGLLVETHLNCLKV 56
          D  N + ++   L+ EEE +G + GE+LRRRISSHPLYGLL++THLNCLKV
Sbjct: 2  DSGNHSTDQPLQLKQEEEDDGVDGGEMLRRRISSHPLYGLLLQTHLNCLKV 52

[Close]

BLAST of MS018856.1 vs. ExPASy TrEMBL
Match: A0A6A4N7Y1 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00002857 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-05
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 12 EEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV 56
          EEE++ L+ E+E+E    +IL+RRISSHPLYGLLVETHL CLKV
Sbjct: 21 EEEEEELEQEQEQE--NSDILKRRISSHPLYGLLVETHLECLKV 62

[Close]

BLAST of MS018856.1 vs. TAIR 10
Match: AT1G14760.1 (KNOX Arabidopsis thaliana meinox )

HSP 1 Score: 50.1 bits (118), Expect = 6.8e-07
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 5  SDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV 56
          S L N  +E    L++E ++   E EIL++RISSHPLYGLL+ +HLNCLKV
Sbjct: 9  SILENMKQEINHSLKEEAQE---EEEILKKRISSHPLYGLLLHSHLNCLKV 56

[Close]

BLAST of MS018856.1 vs. TAIR 10
Match: AT1G14760.2 (KNOX Arabidopsis thaliana meinox )

HSP 1 Score: 50.1 bits (118), Expect = 6.8e-07
Identity = 28/51 (54.90%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 5  SDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLKV 56
          S L N  +E    L++E ++   E EIL++RISSHPLYGLL+ +HLNCLKV
Sbjct: 9  SILENMKQEINHSLKEEAQE---EEEILKKRISSHPLYGLLLHSHLNCLKV 56

[Close]

BLAST of MS018856.1 vs. TAIR 10
Match: AT1G14760.3 (KNOX Arabidopsis thaliana meinox )

HSP 1 Score: 48.5 bits (114), Expect = 2.0e-06
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 5  SDLSNSTEEEQKVLQDEEEKEGWEGEILRRRISSHPLYGLLVETHLNCLK 55
          S L N  +E    L++E ++   E EIL++RISSHPLYGLL+ +HLNCLK
Sbjct: 9  SILENMKQEINHSLKEEAQE---EEEILKKRISSHPLYGLLLHSHLNCLK 55

The following BLAST results are available for this feature:

BLAST of MS018856.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137557.1	1.2e-18	98.11	protein KNATM [Momordica charantia]	[more]
XP_038896017.1	4.9e-07	65.52	homeobox protein knotted-1-like 2 [Benincasa hispida]	[more]
KAG7028461.1	6.4e-07	64.71	Homeobox protein knotted-1-like 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6596993.1	2.4e-06	62.75	Homeobox protein knotted-1-like 2, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022945492.1	2.4e-06	62.75	homeobox protein KNOX3 [Cucurbita moschata]	[more]

BLAST of MS018856.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4HXU3	9.5e-06	54.90	Protein KNATM OS=Arabidopsis thaliana OX=3702 GN=KNATM PE=1 SV=1	[more]

BLAST of MS018856.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C8K6	6.0e-19	98.11	protein KNATM OS=Momordica charantia OX=3673 GN=LOC111008979 PE=4 SV=1	[more]
A0A6J1G133	1.2e-06	62.75	homeobox protein KNOX3 OS=Cucurbita moschata OX=3662 GN=LOC111449708 PE=4 SV=1	[more]
V7C3D2	1.5e-06	62.50	Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_004G148100g PE=4 ...	[more]
A0A6J1IFV6	5.8e-06	60.78	homeobox protein KNOX3-like OS=Cucurbita maxima OX=3661 GN=LOC111472956 PE=4 SV=...	[more]
A0A6A4N7Y1	1.3e-05	68.18	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00002857 PE=4 SV=1	[more]

BLAST of MS018856.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14760.1	6.8e-07	54.90	KNOX Arabidopsis thaliana meinox	[more]
AT1G14760.2	6.8e-07	54.90	KNOX Arabidopsis thaliana meinox	[more]
AT1G14760.3	2.0e-06	54.00	KNOX Arabidopsis thaliana meinox	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005540	KNOX1	PFAM	PF03790	KNOX1	coord: 33..55 e-value: 2.1E-6 score: 27.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS018856	MS018856	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS018856.1-cds	MS018856.1-cds-scaffold14:464294..464458	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS018856.1	MS018856.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding