MS018809.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS018809.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold14: 69521 .. 69691 (+)
Sequence length	171
RNA-Seq Expression	MS018809.1
Synteny	MS018809.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGCAAATAGTCAAGCTGTTGTGGGGGAATTGTTTTTCCTCACCTTTCAAGTCAAGCAAACGGGAGCACCACCAGATTCTCCCACCACAACGTTCCAAGCACGAGTGCGGGCTGGTATTTCTCCTGATGATGATTTTGATGTACAACTGTGCAGGCCAGAACCCTCTAAT

mRNA sequence

AAAGCAAATAGTCAAGCTGTTGTGGGGGAATTGTTTTTCCTCACCTTTCAAGTCAAGCAAACGGGAGCACCACCAGATTCTCCCACCACAACGTTCCAAGCACGAGTGCGGGCTGGTATTTCTCCTGATGATGATTTTGATGTACAACTGTGCAGGCCAGAACCCTCTAAT

Coding sequence (CDS)

AAAGCAAATAGTCAAGCTGTTGTGGGGGAATTGTTTTTCCTCACCTTTCAAGTCAAGCAAACGGGAGCACCACCAGATTCTCCCACCACAACGTTCCAAGCACGAGTGCGGGCTGGTATTTCTCCTGATGATGATTTTGATGTACAACTGTGCAGGCCAGAACCCTCTAAT

Protein sequence

KANSQAVVGELFFLTFQVKQTGAPPDSPTTTFQARVRAGISPDDDFDVQLCRPEPSN

Homology

[Close]

BLAST of MS018809.1 vs. NCBI nr
Match: XP_022137488.1 (uncharacterized protein LOC111008920 isoform X1 [Momordica charantia])

HSP 1 Score: 103.6 bits (257), Expect = 5.7e-19
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1   KANSQAVVGELFFLTFQVKQTGAPPDSPTTTFQARVRAGISPDDDFDVQLCRPEPSN 58
           KANSQA +GELFFLTFQVKQTGAPPDSPTTT QARV AGISP DDFDVQLCRPEP+N
Sbjct: 127 KANSQAALGELFFLTFQVKQTGAPPDSPTTTLQARVLAGISP-DDFDVQLCRPEPTN 182

[Close]

BLAST of MS018809.1 vs. NCBI nr
Match: XP_022137489.1 (uncharacterized protein LOC111008920 isoform X2 [Momordica charantia])

HSP 1 Score: 103.6 bits (257), Expect = 5.7e-19
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1   KANSQAVVGELFFLTFQVKQTGAPPDSPTTTFQARVRAGISPDDDFDVQLCRPEPSN 58
           KANSQA +GELFFLTFQVKQTGAPPDSPTTT QARV AGISP DDFDVQLCRPEP+N
Sbjct: 111 KANSQAALGELFFLTFQVKQTGAPPDSPTTTLQARVLAGISP-DDFDVQLCRPEPTN 166

[Close]

BLAST of MS018809.1 vs. NCBI nr
Match: XP_022137526.1 (uncharacterized protein LOC111008952 [Momordica charantia] >XP_022137527.1 uncharacterized protein LOC111008952 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 8.3e-10
Identity = 35/56 (62.50%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 1   KANSQAVVGELFFLTFQVKQTGAPPDSPTTTFQARVRAGISPDDDFDVQLCRPEPS 57
           KA ++AVVG +++LTF+VKQ G+PP+SPT T QARV  G+ P   FDV+LCRPEPS
Sbjct: 111 KATNKAVVGIMYYLTFEVKQMGSPPNSPTKTLQARVLRGL-PIGHFDVELCRPEPS 165

[Close]

BLAST of MS018809.1 vs. NCBI nr
Match: KGN63981.2 (hypothetical protein Csa_013804 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 5.6e-06
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 0


Query: 2   ANSQAVVGELFFLTFQVKQTGAPPDSPTTTFQARVRAGISPDDDFDVQLCRPEP 56
           AN QA  G L+++TF VK+ GA P+ P TTFQARV  GI      +V+LCRPEP
Sbjct: 201 ANHQAACGILYYITFDVKEAGAAPELPMTTFQARVLYGIRV---IEVELCRPEP 251

[Close]

BLAST of MS018809.1 vs. NCBI nr
Match: XP_022942206.1 (uncharacterized protein LOC111447330 [Cucurbita moschata] >XP_022942207.1 uncharacterized protein LOC111447330 [Cucurbita moschata])

HSP 1 Score: 57.0 bits (136), Expect = 6.2e-05
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 1   KANSQAVVGELFFLTFQVKQTGAPPDSPTTTFQARVRAGISPDDDFDVQLCRPEPS 57
           KAN     G ++++TF VK  G P + P+ TFQA+V   I   D  DV+LCRP+PS
Sbjct: 102 KANHSGCCGSMYYITFNVKPIGTPLEFPSITFQAKVYYAIPIKDIIDVELCRPKPS 157

[Close]

BLAST of MS018809.1 vs. ExPASy TrEMBL
Match: A0A6J1CAH1 (uncharacterized protein LOC111008920 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008920 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.8e-19
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1   KANSQAVVGELFFLTFQVKQTGAPPDSPTTTFQARVRAGISPDDDFDVQLCRPEPSN 58
           KANSQA +GELFFLTFQVKQTGAPPDSPTTT QARV AGISP DDFDVQLCRPEP+N
Sbjct: 127 KANSQAALGELFFLTFQVKQTGAPPDSPTTTLQARVLAGISP-DDFDVQLCRPEPTN 182

[Close]

BLAST of MS018809.1 vs. ExPASy TrEMBL
Match: A0A6J1C7D4 (uncharacterized protein LOC111008920 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008920 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.8e-19
Identity = 51/57 (89.47%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 1   KANSQAVVGELFFLTFQVKQTGAPPDSPTTTFQARVRAGISPDDDFDVQLCRPEPSN 58
           KANSQA +GELFFLTFQVKQTGAPPDSPTTT QARV AGISP DDFDVQLCRPEP+N
Sbjct: 111 KANSQAALGELFFLTFQVKQTGAPPDSPTTTLQARVLAGISP-DDFDVQLCRPEPTN 166

[Close]

BLAST of MS018809.1 vs. ExPASy TrEMBL
Match: A0A6J1C8H7 (uncharacterized protein LOC111008952 OS=Momordica charantia OX=3673 GN=LOC111008952 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.0e-10
Identity = 35/56 (62.50%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 1   KANSQAVVGELFFLTFQVKQTGAPPDSPTTTFQARVRAGISPDDDFDVQLCRPEPS 57
           KA ++AVVG +++LTF+VKQ G+PP+SPT T QARV  G+ P   FDV+LCRPEPS
Sbjct: 111 KATNKAVVGIMYYLTFEVKQMGSPPNSPTKTLQARVLRGL-PIGHFDVELCRPEPS 165

[Close]

BLAST of MS018809.1 vs. ExPASy TrEMBL
Match: A0A0A0LVE8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G032460 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-06
Identity = 30/55 (54.55%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 1  KANSQAVVGELFFLTFQVKQTGAPPDSPTTTFQARVRAGISPDDDFDVQLCRPEP 56
          +AN QA  G L+++TF VK+ GA P+ P TTFQARV  GI      +V+LCRPEP
Sbjct: 40 EANHQAACGILYYITFDVKEAGAAPELPMTTFQARVLYGIRV---IEVELCRPEP 91

[Close]

BLAST of MS018809.1 vs. ExPASy TrEMBL
Match: A0A6J1FN74 (uncharacterized protein LOC111447330 OS=Cucurbita moschata OX=3662 GN=LOC111447330 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.0e-05
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 1   KANSQAVVGELFFLTFQVKQTGAPPDSPTTTFQARVRAGISPDDDFDVQLCRPEPS 57
           KAN     G ++++TF VK  G P + P+ TFQA+V   I   D  DV+LCRP+PS
Sbjct: 102 KANHSGCCGSMYYITFNVKPIGTPLEFPSITFQAKVYYAIPIKDIIDVELCRPKPS 157

The following BLAST results are available for this feature:

BLAST of MS018809.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137488.1	5.7e-19	89.47	uncharacterized protein LOC111008920 isoform X1 [Momordica charantia]	[more]
XP_022137489.1	5.7e-19	89.47	uncharacterized protein LOC111008920 isoform X2 [Momordica charantia]	[more]
XP_022137526.1	8.3e-10	62.50	uncharacterized protein LOC111008952 [Momordica charantia] >XP_022137527.1 uncha...	[more]
KGN63981.2	5.6e-06	55.56	hypothetical protein Csa_013804 [Cucumis sativus]	[more]
XP_022942206.1	6.2e-05	46.43	uncharacterized protein LOC111447330 [Cucurbita moschata] >XP_022942207.1 unchar...	[more]

BLAST of MS018809.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS018809.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CAH1	2.8e-19	89.47	uncharacterized protein LOC111008920 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1C7D4	2.8e-19	89.47	uncharacterized protein LOC111008920 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1C8H7	4.0e-10	62.50	uncharacterized protein LOC111008952 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A0A0LVE8	1.6e-06	54.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G032460 PE=4 SV=1	[more]
A0A6J1FN74	3.0e-05	46.43	uncharacterized protein LOC111447330 OS=Cucurbita moschata OX=3662 GN=LOC1114473...	[more]

BLAST of MS018809.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS018809	MS018809	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS018809.1-cds	MS018809.1-cds-scaffold14:69521..69691	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS018809.1	MS018809.1-protein	polypeptide