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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. GGCGTGGAAACACATAAAAACTCTGGAATGGAAATGGAAAAGAGATGTAACTCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCACAAGAAGAAGGGGTTGATCCGTATCATCTTGACTGGGTTCTGATTTCTCTATTTTTTTAATAATACCGAGTTGGGTTCTTTTCCTACCCGTATCGAATAGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCGGGAAAATCGTATGGTTTTATGAAACCGTGTGCTATGGCTCGAATCCGTAGTCAATCCTAT mRNA sequence GGCGTGGAAACACATAAAAACTCTGGAATGGAAATGGAAAAGAGATGTAACTCCAGTTCCTTCGGAAATGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCGGGAAAATCGTATGGTTTTATGAAACCGTGTGCTATGGCTCGAATCCGTAGTCAATCCTAT Coding sequence (CDS) GGCGTGGAAACACATAAAAACTCTGGAATGGAAATGGAAAAGAGATGTAACTCCAGTTCCTTCGGAAATGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCGGGAAAATCGTATGGTTTTATGAAACCGTGTGCTATGGCTCGAATCCGTAGTCAATCCTAT Protein sequence GVETHKNSGMEMEKRCNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSY
Homology
BLAST of MS018354.1 vs. NCBI nr
Match: EXB56973.1 (hypothetical protein L484_000755 [Morus notabilis]) HSP 1 Score: 75.5 bits (184), Expect = 1.8e-10 Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 0
Query: 13 EKRCNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSY 61
+K + +S EPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSY
Sbjct: 104 KKASHQASNATSKPEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSY 151
BLAST of MS018354.1 vs. NCBI nr
Match: CAA9893571.1 (unnamed protein product [Spirodela intermedia]) HSP 1 Score: 58.9 bits (141), Expect = 1.7e-05 Identity = 31/47 (65.96%), Postives = 33/47 (70.21%), Query Frame = 0
Query: 10 MEMEKRCNSSSFGN----------EHAEPNLLHVKPALFRSGKSYGF 47
ME+EKRC+ SSFGN EHAE NLLHVKPA FRS KSYGF
Sbjct: 1 MEIEKRCSYSSFGNVRFFSYQYRIEHAEQNLLHVKPARFRSEKSYGF 47
BLAST of MS018354.1 vs. ExPASy TrEMBL
Match: A0A0A0L231 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G628320 PE=4 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 3.6e-25 Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0
Query: 1 GVETHKNSGMEMEKRCNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQ 59
GVETHKNSGMEMEKRCNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQ
Sbjct: 103 GVETHKNSGMEMEKRCNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQ 160
BLAST of MS018354.1 vs. ExPASy TrEMBL
Match: W9R592 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000755 PE=4 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 8.5e-11 Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 0
Query: 13 EKRCNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSY 61
+K + +S EPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSY
Sbjct: 104 KKASHQASNATSKPEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSY 151
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| EXB56973.1 | 1.8e-10 | 75.00 | hypothetical protein L484_000755 [Morus notabilis] | [more] |
| CAA9893571.1 | 1.7e-05 | 65.96 | unnamed protein product [Spirodela intermedia] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L231 | 3.6e-25 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G628320 PE=4 SV=1 | [more] |
| W9R592 | 8.5e-11 | 75.00 | Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000755 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..22 |
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| MS018354 | MS018354 | gene |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MS018354.1-cds | MS018354.1-cds-scaffold342:144039..144148 | CDS |
| MS018354.1-cds | MS018354.1-cds-scaffold342:144264..144333 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| MS018354.1 | MS018354.1-protein | polypeptide |
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