MS017906.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS017906.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S13
Location	scaffold373: 3686498 .. 3687144 (+)
Sequence length	420
RNA-Seq Expression	MS017906.1
Synteny	MS017906.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCCTCCATTTTTGGTTCGCAGTAAAGGTATTTCCGCCTCTGCATTACCCTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCTACTGATGTAAGTGTTTTCTAGACTCTCTCATCTGTTTGCCTAACGGAGAATGATACCGGAAATTCTGAGCTTGGTTGGTTGCTCATCCGCCTGAATTGGAATTTCTTTTCCTCTTGGCATTTGAATTTAGGTCGATGATAATATCTGCAAGTTTGCAAAGAAGGGCTTGACGCCATCTCAGATTGGTGTTATTCTTCGTGATTCTCACGGTATCGCTCAGGTCAAAAGCGTTACTGGCAGTAAAATCTTGCGTATTCTTAAAGCCCATGGTATTGTTCTTTTCAATGTCTTGCTTCCACATATATCTCAAGCATATCGTTGTACGTTTTTTACGAGCGTTTTTGACTCTGGAGTTTGGGTTGAACTATTTAGGATTGGCACCAGAGATTCCGGAGGATCTTTATCACTTAATTAAGAAAGCAGTTTCCATCCGTAAGCATTTGGAGAGGAATAGGAAGGACAAGGACTCCAAGTTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGACTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCTCCAGTTTGGAAA

mRNA sequence

TTTCCTCCATTTTTGGTTCGCAGTAAAGGTATTTCCGCCTCTGCATTACCCTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCTACTGATGTCGATGATAATATCTGCAAGTTTGCAAAGAAGGGCTTGACGCCATCTCAGATTGGTGTTATTCTTCGTGATTCTCACGGTATCGCTCAGGTCAAAAGCGTTACTGGCAGTAAAATCTTGCGTATTCTTAAAGCCCATGGATTGGCACCAGAGATTCCGGAGGATCTTTATCACTTAATTAAGAAAGCAGTTTCCATCCGTAAGCATTTGGAGAGGAATAGGAAGGACAAGGACTCCAAGTTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGACTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCTCCAGTTTGGAAA

Coding sequence (CDS)

TTTCCTCCATTTTTGGTTCGCAGTAAAGGTATTTCCGCCTCTGCATTACCCTACAAGAGGACGCCGCCAAGTTGGCTCAAGATCTCTTCTACTGATGTCGATGATAATATCTGCAAGTTTGCAAAGAAGGGCTTGACGCCATCTCAGATTGGTGTTATTCTTCGTGATTCTCACGGTATCGCTCAGGTCAAAAGCGTTACTGGCAGTAAAATCTTGCGTATTCTTAAAGCCCATGGATTGGCACCAGAGATTCCGGAGGATCTTTATCACTTAATTAAGAAAGCAGTTTCCATCCGTAAGCATTTGGAGAGGAATAGGAAGGACAAGGACTCCAAGTTCAGATTGATTCTTGTGGAGAGCAGAATTCACAGACTTGCTCGCTACTACAAGAAAACCAAGAAGCTTCCTCCAGTTTGGAAA

Protein sequence

FPPFLVRSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWK

Homology

[Close]

BLAST of MS017906.1 vs. NCBI nr
Match: XP_022157239.1 (40S ribosomal protein S13-like [Momordica charantia])

HSP 1 Score: 266.9 bits (681), Expect = 9.6e-68
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 7   RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66
           R KGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV
Sbjct: 7   RGKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66

Query: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126
           TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA
Sbjct: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126

Query: 127 RYYKKTKKLPPVWK 141
           RYYKKTKKLPPVWK
Sbjct: 127 RYYKKTKKLPPVWK 140

[Close]

BLAST of MS017906.1 vs. NCBI nr
Match: BAT75920.1 (hypothetical protein VIGAN_01385700 [Vigna angularis var. angularis])

HSP 1 Score: 266.2 bits (679), Expect = 1.6e-67
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 4   FLVRSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQV 63
           FLV SKGIS+SALPYKRTPPSWLKISS DVD+NICKFAKKGLTPSQIGVILRDSHGIAQV
Sbjct: 34  FLVCSKGISSSALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQV 93

Query: 64  KSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIH 123
           KSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIH
Sbjct: 94  KSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIH 153

Query: 124 RLARYYKKTKKLPPVWK 141
           RLARYYKKTKKLPPVWK
Sbjct: 154 RLARYYKKTKKLPPVWK 170

[Close]

BLAST of MS017906.1 vs. NCBI nr
Match: XP_038874585.1 (40S ribosomal protein S13-like [Benincasa hispida])

HSP 1 Score: 265.4 bits (677), Expect = 2.8e-67
Identity = 132/134 (98.51%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 7   RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66
           R KGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGIAQVKSV
Sbjct: 7   RGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66

Query: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126
           TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA
Sbjct: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126

Query: 127 RYYKKTKKLPPVWK 141
           RYYKKTKKLPPVWK
Sbjct: 127 RYYKKTKKLPPVWK 140

[Close]

BLAST of MS017906.1 vs. NCBI nr
Match: KAG7036084.1 (40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 264.2 bits (674), Expect = 6.2e-67
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 7   RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66
           R KGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGIAQV+SV
Sbjct: 7   RGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSV 66

Query: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126
           TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA
Sbjct: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126

Query: 127 RYYKKTKKLPPVWK 141
           RYYKKTKKLPPVWK
Sbjct: 127 RYYKKTKKLPPVWK 140

[Close]

BLAST of MS017906.1 vs. NCBI nr
Match: XP_022922396.1 (40S ribosomal protein S13-like [Cucurbita moschata] >XP_022958210.1 40S ribosomal protein S13-like [Cucurbita moschata] >XP_022970202.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_022996440.1 40S ribosomal protein S13-like [Cucurbita maxima] >XP_023534749.1 40S ribosomal protein S13-like [Cucurbita pepo subsp. pepo] >KAG6579439.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016913.1 40S ribosomal protein S13 [Cucurbita argyrosperma subsp. argyrosperma] >KAG6606139.1 40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 264.2 bits (674), Expect = 6.2e-67
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 7   RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66
           R KGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGIAQV+SV
Sbjct: 7   RGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSV 66

Query: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126
           TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA
Sbjct: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126

Query: 127 RYYKKTKKLPPVWK 141
           RYYKKTKKLPPVWK
Sbjct: 127 RYYKKTKKLPPVWK 140

[Close]

BLAST of MS017906.1 vs. ExPASy Swiss-Prot
Match: P62302 (40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 4.5e-68
Identity = 128/134 (95.52%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 7   RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66
           R KGIS+SALPYKRTPPSWLKISS DV++NICKFAKKGLTPSQIGVILRDSHGIAQV SV
Sbjct: 7   RGKGISSSALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVNSV 66

Query: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126
           TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA
Sbjct: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126

Query: 127 RYYKKTKKLPPVWK 141
           RYYKKTKKLPPVWK
Sbjct: 127 RYYKKTKKLPPVWK 140

[Close]

BLAST of MS017906.1 vs. ExPASy Swiss-Prot
Match: P46298 (40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 9.4e-66
Identity = 125/134 (93.28%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 7   RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66
           + KGIS+SALPY+RT PSWLKISS DVD+ ICKFAKKGLTPSQIGVILRDSHGIAQVKSV
Sbjct: 7   KGKGISSSALPYRRTAPSWLKISSQDVDETICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66

Query: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126
           TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER RKDKDSKFRLILVESRIHRLA
Sbjct: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERFRKDKDSKFRLILVESRIHRLA 126

Query: 127 RYYKKTKKLPPVWK 141
           RYYKKTKKLPPVWK
Sbjct: 127 RYYKKTKKLPPVWK 140

[Close]

BLAST of MS017906.1 vs. ExPASy Swiss-Prot
Match: P59224 (40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-65
Identity = 124/134 (92.54%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 7   RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66
           R KGISASALPYKR+ PSWLK +S DVD++ICKFAKKGLTPSQIGVILRDSHGI QVKSV
Sbjct: 7   RGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSV 66

Query: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126
           TGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLA
Sbjct: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLA 126

Query: 127 RYYKKTKKLPPVWK 141
           RYYKKTKKLPPVWK
Sbjct: 127 RYYKKTKKLPPVWK 140

[Close]

BLAST of MS017906.1 vs. ExPASy Swiss-Prot
Match: P59223 (40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.7e-65
Identity = 123/134 (91.79%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 7   RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66
           R KGISASALPYKR+ PSWLK +  DVD++ICKFAKKGLTPSQIGVILRDSHGI QVKSV
Sbjct: 7   RGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSV 66

Query: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126
           TGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLA
Sbjct: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLA 126

Query: 127 RYYKKTKKLPPVWK 141
           RYYKKTKKLPPVWK
Sbjct: 127 RYYKKTKKLPPVWK 140

[Close]

BLAST of MS017906.1 vs. ExPASy Swiss-Prot
Match: Q69UI1 (40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0117300 PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 5.0e-59
Identity = 113/134 (84.33%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 7   RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66
           R KGIS+SALPYKRTPPSWLK +++DV++ I K AKKG  PSQIGV+LRD HGI  VKSV
Sbjct: 7   RGKGISSSALPYKRTPPSWLKTAASDVEEMIMKAAKKGQMPSQIGVVLRDQHGIPLVKSV 66

Query: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126
           TGSKILRILKAHGLAPEIPEDLY LIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLA
Sbjct: 67  TGSKILRILKAHGLAPEIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLA 126

Query: 127 RYYKKTKKLPPVWK 141
           RYYK+TKKLPP WK
Sbjct: 127 RYYKRTKKLPPTWK 140

[Close]

BLAST of MS017906.1 vs. ExPASy TrEMBL
Match: A0A6J1DVX9 (40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111023995 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 4.7e-68
Identity = 133/134 (99.25%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 7   RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66
           R KGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV
Sbjct: 7   RGKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66

Query: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126
           TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA
Sbjct: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126

Query: 127 RYYKKTKKLPPVWK 141
           RYYKKTKKLPPVWK
Sbjct: 127 RYYKKTKKLPPVWK 140

[Close]

BLAST of MS017906.1 vs. ExPASy TrEMBL
Match: A0A0S3R5T9 (Ribosomal_S13_N domain-containing protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.01G385700 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 8.0e-68
Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 0


Query: 4   FLVRSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQV 63
           FLV SKGIS+SALPYKRTPPSWLKISS DVD+NICKFAKKGLTPSQIGVILRDSHGIAQV
Sbjct: 34  FLVCSKGISSSALPYKRTPPSWLKISSQDVDENICKFAKKGLTPSQIGVILRDSHGIAQV 93

Query: 64  KSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIH 123
           KSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIH
Sbjct: 94  KSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIH 153

Query: 124 RLARYYKKTKKLPPVWK 141
           RLARYYKKTKKLPPVWK
Sbjct: 154 RLARYYKKTKKLPPVWK 170

[Close]

BLAST of MS017906.1 vs. ExPASy TrEMBL
Match: A0A6J1HYG9 (40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111469163 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.0e-67
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 7   RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66
           R KGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGIAQV+SV
Sbjct: 7   RGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSV 66

Query: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126
           TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA
Sbjct: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126

Query: 127 RYYKKTKKLPPVWK 141
           RYYKKTKKLPPVWK
Sbjct: 127 RYYKKTKKLPPVWK 140

[Close]

BLAST of MS017906.1 vs. ExPASy TrEMBL
Match: A0A6J1E411 (40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111430404 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.0e-67
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 7   RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66
           R KGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGIAQV+SV
Sbjct: 7   RGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVRSV 66

Query: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126
           TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA
Sbjct: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126

Query: 127 RYYKKTKKLPPVWK 141
           RYYKKTKKLPPVWK
Sbjct: 127 RYYKKTKKLPPVWK 140

[Close]

BLAST of MS017906.1 vs. ExPASy TrEMBL
Match: A0A0A0KMS8 (Ribosomal_S13_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G158550 PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.0e-67
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 7   RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66
           R KGISASALPYKRTPPSWLKISSTDV+DNICKFAKKGLTPSQIGVILRDSHGIAQVKSV
Sbjct: 7   RGKGISASALPYKRTPPSWLKISSTDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66

Query: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126
           TG+KILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA
Sbjct: 67  TGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126

Query: 127 RYYKKTKKLPPVWK 141
           RYYKKTKKLPPVWK
Sbjct: 127 RYYKKTKKLPPVWK 140

[Close]

BLAST of MS017906.1 vs. TAIR 10
Match: AT4G00100.1 (ribosomal protein S13A )

HSP 1 Score: 250.4 bits (638), Expect = 8.7e-67
Identity = 124/134 (92.54%), Postives = 129/134 (96.27%), Query Frame = 0


Query: 7   RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66
           R KGISASALPYKR+ PSWLK +S DVD++ICKFAKKGLTPSQIGVILRDSHGI QVKSV
Sbjct: 7   RGKGISASALPYKRSSPSWLKTTSQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSV 66

Query: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126
           TGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLA
Sbjct: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLA 126

Query: 127 RYYKKTKKLPPVWK 141
           RYYKKTKKLPPVWK
Sbjct: 127 RYYKKTKKLPPVWK 140

[Close]

BLAST of MS017906.1 vs. TAIR 10
Match: AT3G60770.1 (Ribosomal protein S13/S15 )

HSP 1 Score: 248.4 bits (633), Expect = 3.3e-66
Identity = 123/134 (91.79%), Postives = 128/134 (95.52%), Query Frame = 0


Query: 7   RSKGISASALPYKRTPPSWLKISSTDVDDNICKFAKKGLTPSQIGVILRDSHGIAQVKSV 66
           R KGISASALPYKR+ PSWLK +  DVD++ICKFAKKGLTPSQIGVILRDSHGI QVKSV
Sbjct: 7   RGKGISASALPYKRSSPSWLKTTPQDVDESICKFAKKGLTPSQIGVILRDSHGIPQVKSV 66

Query: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLA 126
           TGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRKHLERNRKDKDSKFRLILVESRIHRLA
Sbjct: 67  TGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLA 126

Query: 127 RYYKKTKKLPPVWK 141
           RYYKKTKKLPPVWK
Sbjct: 127 RYYKKTKKLPPVWK 140

The following BLAST results are available for this feature:

BLAST of MS017906.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157239.1	9.6e-68	99.25	40S ribosomal protein S13-like [Momordica charantia]	[more]
BAT75920.1	1.6e-67	97.08	hypothetical protein VIGAN_01385700 [Vigna angularis var. angularis]	[more]
XP_038874585.1	2.8e-67	98.51	40S ribosomal protein S13-like [Benincasa hispida]	[more]
KAG7036084.1	6.2e-67	97.76	40S ribosomal protein S13, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022922396.1	6.2e-67	97.76	40S ribosomal protein S13-like [Cucurbita moschata] >XP_022958210.1 40S ribosoma...	[more]

BLAST of MS017906.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62302	4.5e-68	95.52	40S ribosomal protein S13 OS=Glycine max OX=3847 GN=RPS13 PE=2 SV=1	[more]
P46298	9.4e-66	93.28	40S ribosomal protein S13 OS=Pisum sativum OX=3888 GN=RPS13 PE=2 SV=1	[more]
P59224	1.2e-65	92.54	40S ribosomal protein S13-2 OS=Arabidopsis thaliana OX=3702 GN=RPS13B PE=2 SV=1	[more]
P59223	4.7e-65	91.79	40S ribosomal protein S13-1 OS=Arabidopsis thaliana OX=3702 GN=RPS13A PE=2 SV=1	[more]
Q69UI1	5.0e-59	84.33	40S ribosomal protein S13-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g011...	[more]

BLAST of MS017906.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVX9	4.7e-68	99.25	40S ribosomal protein S13-like OS=Momordica charantia OX=3673 GN=LOC111023995 PE...	[more]
A0A0S3R5T9	8.0e-68	97.08	Ribosomal_S13_N domain-containing protein OS=Vigna angularis var. angularis OX=1...	[more]
A0A6J1HYG9	3.0e-67	97.76	40S ribosomal protein S13-like OS=Cucurbita maxima OX=3661 GN=LOC111469163 PE=3 ...	[more]
A0A6J1E411	3.0e-67	97.76	40S ribosomal protein S13-like OS=Cucurbita moschata OX=3662 GN=LOC111430404 PE=...	[more]
A0A0A0KMS8	3.0e-67	97.76	Ribosomal_S13_N domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G15...	[more]

BLAST of MS017906.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G00100.1	8.7e-67	92.54	ribosomal protein S13A	[more]
AT3G60770.1	3.3e-66	91.79	Ribosomal protein S13/S15	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000589	Ribosomal protein S15	SMART	SM01387	Ribosomal_S15_2	coord: 70..140 e-value: 9.2E-9 score: 45.1
IPR000589	Ribosomal protein S15	PFAM	PF00312	Ribosomal_S15	coord: 74..134 e-value: 3.3E-14 score: 52.8
IPR000589	Ribosomal protein S15	PROSITE	PS00362	RIBOSOMAL_S15	coord: 98..128
IPR000589	Ribosomal protein S15	CDD	cd00353	Ribosomal_S15p_S13e	coord: 70..140 e-value: 2.20088E-25 score: 89.8698
IPR012606	Ribosomal protein S13/S15, N-terminal	SMART	SM01386	Ribosomal_S13_N_2	coord: 6..60 e-value: 2.4E-27 score: 106.8
IPR012606	Ribosomal protein S13/S15, N-terminal	PFAM	PF08069	Ribosomal_S13_N	coord: 7..60 e-value: 3.9E-25 score: 87.7
None	No IPR available	GENE3D	1.10.287.10		coord: 83..140 e-value: 4.7E-34 score: 118.5
None	No IPR available	GENE3D	4.10.860.130		coord: 35..82 e-value: 5.5E-29 score: 101.6
None	No IPR available	PANTHER	PTHR11885:SF22	40S RIBOSOMAL PROTEIN S13	coord: 7..140
IPR023029	Ribosomal protein S15P	PANTHER	PTHR11885	RIBOSOMAL PROTEIN S15P/S13E	coord: 7..140
IPR009068	S15/NS1, RNA-binding	SUPERFAMILY	47060	S15/NS1 RNA-binding domain	coord: 66..139

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS017906	MS017906	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS017906.1-cds	MS017906.1-cds-scaffold373:3686498..3686593	CDS
MS017906.1-cds	MS017906.1-cds-scaffold373:3686718..3686856	CDS
MS017906.1-cds	MS017906.1-cds-scaffold373:3686960..3687144	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS017906.1	MS017906.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome