MS017741.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS017741.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S10-like
Location	scaffold373: 2048447 .. 2049574 (-)
Sequence length	534
RNA-Seq Expression	MS017741.1
Synteny	MS017741.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCATTTCCGAGAAAAACCGCAGAGAGATCTCCAAGTACCTCTTTCAAGGTAGCGATTTTTTCTATTGTGTATGTTCGCTCTGGTTAGGGTTTTTTTATTCGTCGCATTATTTATTTAATTTTTTGGGTTCATACAGAGGGAGTTTGCTATGCCAAGAAGGACTACAATCTGGCCAAGCACCCAGAAATCGATGTGCCAAATTTGCAAGTGATTAAGCTGATGCAGAGCTTCAAGTCTAAGGAGTATGTGCGCGAGACATTTGCCTGGATGCATTACTACTGGTACCTCACGAACGATGGCATTGAGTTTCTGAGGACTTACCTGAATCTCCCTTCGGAGATTGTCCCGGCTACCTTGAAGAAACAAGCCAAGCCGGCTGGTCGACCATTTGGCGGCCCATCTGGAGACCGCCCACGGTAAAATTTCCTCTTTTCCTTTATTGATTTTCTTTTGCTTATTGGATTTAGCTGAGCTTTGTGTTGGGATATAGCTTGTTGAGTTTTCTCTTGGTAATATTACTTTGGTATTATTACATAATTATCGGTTCTGAATGGTCTACTACTGCTTTGACTAGACTGGATGTTGGAACTTAGTTATCCTTATACATTGATCTTACTGAGCTACTGATTCTGCACTCTGTTGGTCTCTGTATTGTTTTAAAATCTGATTTTCATCATTCTCTTATTCTCATCCCATAATGTTGATCTTGATTAGTGGCCCTTCGAGATTTGATGGGGAAAGAAGATTTGGTGACCGGGATGGCTACCGTGGTGGTCCTCGTGGACCTGGTGGTGATTTTGGTGATAAGGGTGGAGCCCCTGCTGATTACAGACCTTCATTTGGGGTAAACATTAATACCACACTTACAATTTTCCAACTCTTGATGCTTGTATGCAGGATAGATTTGTTTGTCTTTTCTTATACCAATTAGAGATTGTTAGATCTTGATATCAATGTGAATTTTAACTTTAGTTACAGTTTGTTCTCCTAGTTGGGAGCAATAAAGTTAATATTTTTCTAATTAGTCCCTATTGGTGGTTTTAACATTGTAGGGTCCTGGTGGAAGGCCTGGCTTTGGCCGTGGAGCTGGTGGCTATGGTGGAGCACCTGCACCCTCAAATCTTGAA

mRNA sequence

ATCATTTCCGAGAAAAACCGCAGAGAGATCTCCAAGTACCTCTTTCAAGAGGGAGTTTGCTATGCCAAGAAGGACTACAATCTGGCCAAGCACCCAGAAATCGATGTGCCAAATTTGCAAGTGATTAAGCTGATGCAGAGCTTCAAGTCTAAGGAGTATGTGCGCGAGACATTTGCCTGGATGCATTACTACTGGTACCTCACGAACGATGGCATTGAGTTTCTGAGGACTTACCTGAATCTCCCTTCGGAGATTGTCCCGGCTACCTTGAAGAAACAAGCCAAGCCGGCTGGTCGACCATTTGGCGGCCCATCTGGAGACCGCCCACGTGGCCCTTCGAGATTTGATGGGGAAAGAAGATTTGGTGACCGGGATGGCTACCGTGGTGGTCCTCGTGGACCTGGTGGTGATTTTGGTGATAAGGGTGGAGCCCCTGCTGATTACAGACCTTCATTTGGGGGTCCTGGTGGAAGGCCTGGCTTTGGCCGTGGAGCTGGTGGCTATGGTGGAGCACCTGCACCCTCAAATCTTGAA

Coding sequence (CDS)

ATCATTTCCGAGAAAAACCGCAGAGAGATCTCCAAGTACCTCTTTCAAGAGGGAGTTTGCTATGCCAAGAAGGACTACAATCTGGCCAAGCACCCAGAAATCGATGTGCCAAATTTGCAAGTGATTAAGCTGATGCAGAGCTTCAAGTCTAAGGAGTATGTGCGCGAGACATTTGCCTGGATGCATTACTACTGGTACCTCACGAACGATGGCATTGAGTTTCTGAGGACTTACCTGAATCTCCCTTCGGAGATTGTCCCGGCTACCTTGAAGAAACAAGCCAAGCCGGCTGGTCGACCATTTGGCGGCCCATCTGGAGACCGCCCACGTGGCCCTTCGAGATTTGATGGGGAAAGAAGATTTGGTGACCGGGATGGCTACCGTGGTGGTCCTCGTGGACCTGGTGGTGATTTTGGTGATAAGGGTGGAGCCCCTGCTGATTACAGACCTTCATTTGGGGGTCCTGGTGGAAGGCCTGGCTTTGGCCGTGGAGCTGGTGGCTATGGTGGAGCACCTGCACCCTCAAATCTTGAA

Protein sequence

IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERRFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE

Homology

[Close]

BLAST of MS017741.1 vs. NCBI nr
Match: XP_022158473.1 (transcription factor MYB39-like [Momordica charantia])

HSP 1 Score: 360.5 bits (924), Expect = 8.1e-96
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 60
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 324 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 383

Query: 61  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 120
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 384 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 443

Query: 121 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179
           FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 444 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 501

[Close]

BLAST of MS017741.1 vs. NCBI nr
Match: KAG7016989.1 (40S ribosomal protein S10-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 357.5 bits (916), Expect = 6.9e-95
Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 60
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 64  IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 123

Query: 61  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 120
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 124 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 183

Query: 121 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179
           FGDRDGYRGGPRG GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 184 FGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 241

[Close]

BLAST of MS017741.1 vs. NCBI nr
Match: XP_023549574.1 (40S ribosomal protein S10-1-like [Cucurbita pepo subsp. pepo] >KAG6579529.1 40S ribosomal protein S10-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 357.5 bits (916), Expect = 6.9e-95
Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 60
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 61  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 120
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 121

Query: 121 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179
           FGDRDGYRGGPRG GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 122 FGDRDGYRGGPRGSGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of MS017741.1 vs. NCBI nr
Match: XP_011654726.1 (40S ribosomal protein S10-1 [Cucumis sativus] >KAA0042728.1 40S ribosomal protein S10-1 [Cucumis melo var. makuwa] >KGN50065.1 hypothetical protein Csa_000371 [Cucumis sativus])

HSP 1 Score: 357.5 bits (916), Expect = 6.9e-95
Identity = 176/178 (98.88%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 60
           II EKNR+EISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IIPEKNRKEISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 61  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 120
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 121

Query: 121 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179
           FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 122 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of MS017741.1 vs. NCBI nr
Match: XP_022928970.1 (40S ribosomal protein S10-1-like [Cucurbita moschata])

HSP 1 Score: 357.5 bits (916), Expect = 6.9e-95
Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 60
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 61  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 120
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 121

Query: 121 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179
           FGDRDGYRGGPRG GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 122 FGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of MS017741.1 vs. ExPASy Swiss-Prot
Match: Q9SW09 (40S ribosomal protein S10-1 OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=1 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 5.9e-73
Identity = 145/176 (82.39%), Postives = 156/176 (88.64%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 60
           IISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 61  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER- 120
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR RGP R DG+R 
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRP 121

Query: 121 RFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 176
           RFGDRDGYRGGPR  GGD  +KGGAPAD++PSF G GGRPGFGRGAGGY  A APS
Sbjct: 122 RFGDRDGYRGGPR--GGD--EKGGAPADFQPSFQGGGGRPGFGRGAGGYSAA-APS 172

[Close]

BLAST of MS017741.1 vs. ExPASy Swiss-Prot
Match: P0DKK8 (40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 PE=2 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.2e-72
Identity = 143/182 (78.57%), Postives = 157/182 (86.26%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 60
           II +KNR EI KYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+W
Sbjct: 2   IIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSW 61

Query: 61  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFG-GPSGDRPRGPSRFDGER 120
            +YYWYLTNDGIE LR YLNLPSEIVPATLKK A+P GRPFG GP GDRPRGP RF+G+R
Sbjct: 62  QYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGDR 121

Query: 121 -RFGDRDGYRGGPRGPGGDF-GDKGGAPADYRPSFGGPGGRPGFGR-GAGGYGGAPAPSN 179
            RFGDRDGYRGGPRG  GDF G+KGGAPA+++PSF   GGRPGFGR G GG+G  P  S+
Sbjct: 122 PRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSSGGRPGFGRGGGGGFGAGPTSSS 181

[Close]

BLAST of MS017741.1 vs. ExPASy Swiss-Prot
Match: P0DKK9 (40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-2 PE=2 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.2e-72
Identity = 143/182 (78.57%), Postives = 157/182 (86.26%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 60
           II +KNR EI KYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+W
Sbjct: 2   IIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSW 61

Query: 61  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFG-GPSGDRPRGPSRFDGER 120
            +YYWYLTNDGIE LR YLNLPSEIVPATLKK A+P GRPFG GP GDRPRGP RF+G+R
Sbjct: 62  QYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGDR 121

Query: 121 -RFGDRDGYRGGPRGPGGDF-GDKGGAPADYRPSFGGPGGRPGFGR-GAGGYGGAPAPSN 179
            RFGDRDGYRGGPRG  GDF G+KGGAPA+++PSF   GGRPGFGR G GG+G  P  S+
Sbjct: 122 PRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRSSGGRPGFGRGGGGGFGAGPTSSS 181

[Close]

BLAST of MS017741.1 vs. ExPASy Swiss-Prot
Match: Q9FFS8 (40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.6e-70
Identity = 144/180 (80.00%), Postives = 158/180 (87.78%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFA 60
           IISE NRREISKYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 2   IISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFA 61

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120
           WMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG  GDRPRGP R DGER
Sbjct: 62  WMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG-GGDRPRGPPRGDGER 121

Query: 121 RFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSF-GGPGG-RPGFGRGAGGYGGAPAPSNL 178
           RFGDRDGYRGGP+  GG++GDK GAPADY+P F GG GG R GFGRGAGG+GG  A S+L
Sbjct: 122 RFGDRDGYRGGPKS-GGEYGDKAGAPADYQPGFRGGAGGARQGFGRGAGGFGGGAAGSDL 179

[Close]

BLAST of MS017741.1 vs. ExPASy Swiss-Prot
Match: Q9LTF2 (40S ribosomal protein S10-3 OS=Arabidopsis thaliana OX=3702 GN=RPS10C PE=1 SV=2)

HSP 1 Score: 260.8 bits (665), Expect = 1.2e-68
Identity = 139/176 (78.98%), Postives = 150/176 (85.23%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 60
           IISE NR+EI KYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 61  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER- 120
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR RGP    G+R 
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDRP 121

Query: 121 RFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 176
           RFGDRDGYR GPR  G   G+KGGAPADY+PSF G G   GFGRGAGGY  A APS
Sbjct: 122 RFGDRDGYRAGPRAGGEFGGEKGGAPADYQPSFQGSG--RGFGRGAGGYSAA-APS 174

[Close]

BLAST of MS017741.1 vs. ExPASy TrEMBL
Match: A0A6J1DW67 (transcription factor MYB39-like OS=Momordica charantia OX=3673 GN=LOC111024953 PE=4 SV=1)

HSP 1 Score: 360.5 bits (924), Expect = 3.9e-96
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 60
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 324 IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 383

Query: 61  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 120
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 384 MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 443

Query: 121 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179
           FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 444 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 501

[Close]

BLAST of MS017741.1 vs. ExPASy TrEMBL
Match: A0A5A7TIX3 (40S ribosomal protein S10-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002270 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.3e-95
Identity = 176/178 (98.88%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 60
           II EKNR+EISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IIPEKNRKEISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 61  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 120
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 121

Query: 121 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179
           FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 122 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of MS017741.1 vs. ExPASy TrEMBL
Match: A0A0A0KK65 (S10_plectin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152800 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.3e-95
Identity = 176/178 (98.88%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 60
           II EKNR+EISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IIPEKNRKEISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 61  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 120
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 121

Query: 121 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179
           FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 122 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of MS017741.1 vs. ExPASy TrEMBL
Match: A0A6J1ESX8 (40S ribosomal protein S10-1-like OS=Cucurbita moschata OX=3662 GN=LOC111435712 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.3e-95
Identity = 177/178 (99.44%), Postives = 177/178 (99.44%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 60
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 61  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 120
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 121

Query: 121 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179
           FGDRDGYRGGPRG GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE
Sbjct: 122 FGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179

[Close]

BLAST of MS017741.1 vs. ExPASy TrEMBL
Match: A0A6J1I4J7 (40S ribosomal protein S10-1-like OS=Cucurbita maxima OX=3661 GN=LOC111469100 PE=4 SV=1)

HSP 1 Score: 355.1 bits (910), Expect = 1.7e-94
Identity = 176/178 (98.88%), Postives = 176/178 (98.88%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 60
           IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 61  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 120
           MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR
Sbjct: 62  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 121

Query: 121 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPSNLE 179
           FGDRDGYRGGPRG GGDFGDKGGAPADYRPSFGGPGGRPGFGRGAG YGGAPAPSNLE
Sbjct: 122 FGDRDGYRGGPRGAGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGSYGGAPAPSNLE 179

[Close]

BLAST of MS017741.1 vs. TAIR 10
Match: AT4G25740.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 275.0 bits (702), Expect = 4.2e-74
Identity = 145/176 (82.39%), Postives = 156/176 (88.64%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 60
           IISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 61  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER- 120
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR RGP R DG+R 
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRP 121

Query: 121 RFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 176
           RFGDRDGYRGGPR  GGD  +KGGAPAD++PSF G GGRPGFGRGAGGY  A APS
Sbjct: 122 RFGDRDGYRGGPR--GGD--EKGGAPADFQPSFQGGGGRPGFGRGAGGYSAA-APS 172

[Close]

BLAST of MS017741.1 vs. TAIR 10
Match: AT5G41520.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 266.9 bits (681), Expect = 1.1e-71
Identity = 144/180 (80.00%), Postives = 158/180 (87.78%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFA 60
           IISE NRREISKYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETFA
Sbjct: 2   IISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFA 61

Query: 61  WMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER 120
           WMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG  GDRPRGP R DGER
Sbjct: 62  WMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG-GGDRPRGPPRGDGER 121

Query: 121 RFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSF-GGPGG-RPGFGRGAGGYGGAPAPSNL 178
           RFGDRDGYRGGP+  GG++GDK GAPADY+P F GG GG R GFGRGAGG+GG  A S+L
Sbjct: 122 RFGDRDGYRGGPKS-GGEYGDKAGAPADYQPGFRGGAGGARQGFGRGAGGFGGGAAGSDL 179

[Close]

BLAST of MS017741.1 vs. TAIR 10
Match: AT5G52650.1 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 260.8 bits (665), Expect = 8.2e-70
Identity = 139/176 (78.98%), Postives = 150/176 (85.23%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 60
           IISE NR+EI KYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 61  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGER- 120
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP GDR RGP    G+R 
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDRP 121

Query: 121 RFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 176
           RFGDRDGYR GPR  G   G+KGGAPADY+PSF G G   GFGRGAGGY  A APS
Sbjct: 122 RFGDRDGYRAGPRAGGEFGGEKGGAPADYQPSFQGSG--RGFGRGAGGYSAA-APS 174

[Close]

BLAST of MS017741.1 vs. TAIR 10
Match: AT4G25740.2 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 225.3 bits (573), Expect = 3.8e-59
Identity = 122/175 (69.71%), Postives = 132/175 (75.43%), Query Frame = 0


Query: 1   IISEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAW 60
           IISE NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAW
Sbjct: 2   IISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAW 61

Query: 61  MHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGPSGDRPRGPSRFDGERR 120
           MHYYW+LTN+GIEFLRTYLNLPS++VPATLKK AKP GRPFGGP                
Sbjct: 62  MHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPR--------------- 121

Query: 121 FGDRDGYRGGPRGPGGDFGDKGGAPADYRPSFGGPGGRPGFGRGAGGYGGAPAPS 176
                         GGD  +KGGAPAD++PSF G GGRPGFGRGAGGY  A APS
Sbjct: 122 --------------GGD--EKGGAPADFQPSFQGGGGRPGFGRGAGGYSAA-APS 144

[Close]

BLAST of MS017741.1 vs. TAIR 10
Match: AT5G41520.2 (RNA binding Plectin/S10 domain-containing protein )

HSP 1 Score: 202.2 bits (513), Expect = 3.5e-52
Identity = 109/135 (80.74%), Postives = 118/135 (87.41%), Query Frame = 0


Query: 45  MQSFKSKEYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKQAKPAGRPFGGP 104
           MQSFKSKEYVRETFAWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKKQ KP GRPFGG 
Sbjct: 1   MQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGG- 60

Query: 105 SGDRPRGPSRFDGERRFGDRDGYRGGPRGPGGDFGDKGGAPADYRPSF-GGPGG-RPGFG 164
            GDRPRGP R DGERRFGDRDGYRGGP+  GG++GDK GAPADY+P F GG GG R GFG
Sbjct: 61  GGDRPRGPPRGDGERRFGDRDGYRGGPKS-GGEYGDKAGAPADYQPGFRGGAGGARQGFG 120

Query: 165 RGAGGYGGAPAPSNL 178
           RGAGG+GG  A S+L
Sbjct: 121 RGAGGFGGGAAGSDL 133

The following BLAST results are available for this feature:

BLAST of MS017741.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158473.1	8.1e-96	100.00	transcription factor MYB39-like [Momordica charantia]	[more]
KAG7016989.1	6.9e-95	99.44	40S ribosomal protein S10-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_023549574.1	6.9e-95	99.44	40S ribosomal protein S10-1-like [Cucurbita pepo subsp. pepo] >KAG6579529.1 40S ...	[more]
XP_011654726.1	6.9e-95	98.88	40S ribosomal protein S10-1 [Cucumis sativus] >KAA0042728.1 40S ribosomal protei...	[more]
XP_022928970.1	6.9e-95	99.44	40S ribosomal protein S10-1-like [Cucurbita moschata]	[more]

BLAST of MS017741.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SW09	5.9e-73	82.39	40S ribosomal protein S10-1 OS=Arabidopsis thaliana OX=3702 GN=RPS10A PE=1 SV=1	[more]
P0DKK8	2.2e-72	78.57	40S ribosomal protein S10-1 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 ...	[more]
P0DKK9	2.2e-72	78.57	40S ribosomal protein S10-2 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-2 ...	[more]
Q9FFS8	1.6e-70	80.00	40S ribosomal protein S10-2 OS=Arabidopsis thaliana OX=3702 GN=RPS10B PE=2 SV=1	[more]
Q9LTF2	1.2e-68	78.98	40S ribosomal protein S10-3 OS=Arabidopsis thaliana OX=3702 GN=RPS10C PE=1 SV=2	[more]

BLAST of MS017741.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DW67	3.9e-96	100.00	transcription factor MYB39-like OS=Momordica charantia OX=3673 GN=LOC111024953 P...	[more]
A0A5A7TIX3	3.3e-95	98.88	40S ribosomal protein S10-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A0A0KK65	3.3e-95	98.88	S10_plectin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G152800...	[more]
A0A6J1ESX8	3.3e-95	99.44	40S ribosomal protein S10-1-like OS=Cucurbita moschata OX=3662 GN=LOC111435712 P...	[more]
A0A6J1I4J7	1.7e-94	98.88	40S ribosomal protein S10-1-like OS=Cucurbita maxima OX=3661 GN=LOC111469100 PE=...	[more]

BLAST of MS017741.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G25740.1	4.2e-74	82.39	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G41520.1	1.1e-71	80.00	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G52650.1	8.2e-70	78.98	RNA binding Plectin/S10 domain-containing protein	[more]
AT4G25740.2	3.8e-59	69.71	RNA binding Plectin/S10 domain-containing protein	[more]
AT5G41520.2	3.5e-52	80.74	RNA binding Plectin/S10 domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..103 e-value: 2.7E-46 score: 157.8
IPR005326	Plectin/S10, N-terminal	PFAM	PF03501	S10_plectin	coord: 2..93 e-value: 1.0E-42 score: 144.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..127
None	No IPR available	PANTHER	PTHR12146:SF20	40S RIBOSOMAL PROTEIN S10-1-LIKE	coord: 1..177
IPR037447	40S Ribosomal protein S10	PANTHER	PTHR12146	40S RIBOSOMAL PROTEIN S10	coord: 1..177

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS017741	MS017741	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS017741.1-cds	MS017741.1-cds-scaffold373:2048447..2048521	CDS
MS017741.1-cds	MS017741.1-cds-scaffold373:2048730..2048859	CDS
MS017741.1-cds	MS017741.1-cds-scaffold373:2049158..2049437	CDS
MS017741.1-cds	MS017741.1-cds-scaffold373:2049526..2049574	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS017741.1	MS017741.1-protein	polypeptide