MS016636.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS016636.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1
Location	scaffold587: 212993 .. 213193 (-)
Sequence length	201
RNA-Seq Expression	MS016636.1
Synteny	MS016636.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAGCTGTTCTTCGCAGTCGCTTTCTCGGCAGTGCCACTGGCGCTCTATGTGCCGCCGGTTCGGAGCCTCAATCTTTTCGTCGAAACCCTAGAGGATCTTCTTCGTCACACTGCCATTCATACGCTCACACTTTTTCCTCGGTTTCGCATCGCCTTCTCTCGCCTCTTCCGCTCCCTCTTCGGCGCCTCCTATTCT

mRNA sequence

ATGCTTCAGCTGTTCTTCGCAGTCGCTTTCTCGGCAGTGCCACTGGCGCTCTATGTGCCGCCGGTTCGGAGCCTCAATCTTTTCGTCGAAACCCTAGAGGATCTTCTTCGTCACACTGCCATTCATACGCTCACACTTTTTCCTCGGTTTCGCATCGCCTTCTCTCGCCTCTTCCGCTCCCTCTTCGGCGCCTCCTATTCT

Coding sequence (CDS)

ATGCTTCAGCTGTTCTTCGCAGTCGCTTTCTCGGCAGTGCCACTGGCGCTCTATGTGCCGCCGGTTCGGAGCCTCAATCTTTTCGTCGAAACCCTAGAGGATCTTCTTCGTCACACTGCCATTCATACGCTCACACTTTTTCCTCGGTTTCGCATCGCCTTCTCTCGCCTCTTCCGCTCCCTCTTCGGCGCCTCCTATTCT

Protein sequence

MLQLFFAVAFSAVPLALYVPPVRSLNLFVETLEDLLRHTAIHTLTLFPRFRIAFSRLFRSLFGASYS

Homology

[Close]

BLAST of MS016636.1 vs. NCBI nr
Match: KAE8649764.1 (hypothetical protein Csa_012384 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 8.0e-20
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLALYVPPVRSLNLFVETLEDLLRHTAIHTLTLFPRFRIAFSRLFRS 60
          MLQLFFAVAFSAVPL LYVPP+RSL+LFVETLEDLL HTAIHT+  +PRFR+AFSRLF S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 LFGASYS 68
          +F  SYS
Sbjct: 61 VFRVSYS 67

[Close]

BLAST of MS016636.1 vs. NCBI nr
Match: KAA0060071.1 (RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo var. makuwa] >TYK29882.1 RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 1.0e-19
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLALYVPPVRSLNLFVETLEDLLRHTAIHTLTLFPRFRIAFSRLFRS 60
          MLQLFFAVAFSAVPL LYVPP+RSL+LFVETLEDLL HTAIHT+  +PRFR+AFSRLF S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 LFGASYS 68
           F  SYS
Sbjct: 61 FFRVSYS 67

[Close]

BLAST of MS016636.1 vs. NCBI nr
Match: KAG6603254.1 (hypothetical protein SDJN03_03863, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.5 bits (249), Expect = 5.7e-18
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLALYVPPVRSLNLFVETLEDLLRHTAIHTLTLFPRFRIAFSRLFRS 60
          MLQLFFAVAFSA PL  YVPP+RSLNLFVETLEDL RHTA HT   +PRFR+AFSR+F S
Sbjct: 1  MLQLFFAVAFSAAPLTFYVPPIRSLNLFVETLEDLFRHTATHTHRAYPRFRLAFSRVFGS 60

Query: 61 LFGASYS 68
          +F  SYS
Sbjct: 61 VFRVSYS 67

[Close]

BLAST of MS016636.1 vs. NCBI nr
Match: KAG7037385.1 (hypothetical protein SDJN02_01010, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.5 bits (249), Expect = 5.7e-18
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLALYVPPVRSLNLFVETLEDLLRHTAIHTLTLFPRFRIAFSRLFRS 60
          MLQLFFAVAFSA PL  YVPP+RSLNLFVETLEDL RHTA HT   +PRFR+AFSR+F S
Sbjct: 1  MLQLFFAVAFSAAPLTFYVPPIRSLNLFVETLEDLFRHTATHTHRAYPRFRLAFSRVFGS 60

Query: 61 LFGASYS 68
          +F  SYS
Sbjct: 61 VFRVSYS 67

[Close]

BLAST of MS016636.1 vs. NCBI nr
Match: KAG6595630.1 (hypothetical protein SDJN03_12183, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027603.1 hypothetical protein SDJN02_11617, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.6 bits (244), Expect = 2.2e-17
Identity = 52/67 (77.61%), Postives = 58/67 (86.57%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLALYVPPVRSLNLFVETLEDLLRHTAIHTLTLFPRFRIAFSRLFRS 60
          MLQLFFAVAFSAVPL LYVPP+RSLNLFVETLE+LLR +A HTL ++PRFR AFSRLF S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETLEELLRDSAAHTLRVYPRFRQAFSRLFAS 60

Query: 61 LFGASYS 68
          +F  S S
Sbjct: 61 IFRVSNS 67

[Close]

BLAST of MS016636.1 vs. ExPASy TrEMBL
Match: A0A0A0KZF7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569720 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.9e-20
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLALYVPPVRSLNLFVETLEDLLRHTAIHTLTLFPRFRIAFSRLFRS 60
          MLQLFFAVAFSAVPL LYVPP+RSL+LFVETLEDLL HTAIHT+  +PRFR+AFSRLF S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 LFGASYS 68
          +F  SYS
Sbjct: 61 VFRVSYS 67

[Close]

BLAST of MS016636.1 vs. ExPASy TrEMBL
Match: A0A5A7V2T5 (RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001360 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 5.0e-20
Identity = 54/67 (80.60%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLALYVPPVRSLNLFVETLEDLLRHTAIHTLTLFPRFRIAFSRLFRS 60
          MLQLFFAVAFSAVPL LYVPP+RSL+LFVETLEDLL HTAIHT+  +PRFR+AFSRLF S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLSLFVETLEDLLHHTAIHTIRAYPRFRLAFSRLFAS 60

Query: 61 LFGASYS 68
           F  SYS
Sbjct: 61 FFRVSYS 67

[Close]

BLAST of MS016636.1 vs. ExPASy TrEMBL
Match: A0A2K1XB26 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G053400 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.6e-16
Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLALYVPPVRSLNLFVETLEDLLRHTAIHTLTLFPRFRIAFSRLFRS 60
          MLQLFFAVAFSAVPL LYVPP+RSLNLFVET+ED+LR T+++T+  +PR R+ FSR FR+
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETMEDVLRQTSLYTVRAYPRIRLVFSRFFRN 60

Query: 61 LFGAS 66
          LF  S
Sbjct: 61 LFNLS 65

[Close]

BLAST of MS016636.1 vs. ExPASy TrEMBL
Match: A0A2C9V7E1 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G026700 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.6e-16
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLALYVPPVRSLNLFVETLEDLLRHTAIHTLTLFPRFRIAFSRLFRS 60
          MLQLFFAVAFSAVPL LYVPP+RSLN FVET+EDLLR TA ++L  +PRFR+AFSR+F +
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNPFVETIEDLLRQTAFYSLRAYPRFRLAFSRIFSN 60

Query: 61 LFGAS 66
          LF  S
Sbjct: 61 LFRLS 65

[Close]

BLAST of MS016636.1 vs. ExPASy TrEMBL
Match: A0A6P6AMB2 (uncharacterized protein LOC111310902 isoform X1 OS=Durio zibethinus OX=66656 GN=LOC111310902 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.8e-16
Identity = 46/65 (70.77%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLALYVPPVRSLNLFVETLEDLLRHTAIHTLTLFPRFRIAFSRLFRS 60
          MLQLFFAVAFSAVPL LYVPP+RSLNLFVET+ED+LR T ++TL  +PR R+ FSR+F S
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETIEDMLRQTTLYTLRAYPRIRLGFSRIFGS 60

Query: 61 LFGAS 66
          +F  S
Sbjct: 61 IFHLS 65

[Close]

BLAST of MS016636.1 vs. TAIR 10
Match: AT3G52105.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 7.7e-13
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 1  MLQLFFAVAFSAVPLALYVPPVRSLNLFVETLEDLLRHTAIHTLTLFPRFRIAFSRLFRS 60
          MLQLFF +AFSA PL LY+PP+R L +FVET+E++     +++  LFPR RIA+SRL   
Sbjct: 1  MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 60

Query: 61 LFGAS 66
           F +S
Sbjct: 61 FFSSS 65

The following BLAST results are available for this feature:

BLAST of MS016636.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649764.1	8.0e-20	80.60	hypothetical protein Csa_012384 [Cucumis sativus]	[more]
KAA0060071.1	1.0e-19	80.60	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 [Cucumis melo ...	[more]
KAG6603254.1	5.7e-18	76.12	hypothetical protein SDJN03_03863, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7037385.1	5.7e-18	76.12	hypothetical protein SDJN02_01010, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6595630.1	2.2e-17	77.61	hypothetical protein SDJN03_12183, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS016636.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS016636.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZF7	3.9e-20	80.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G569720 PE=4 SV=1	[more]
A0A5A7V2T5	5.0e-20	80.60	RING/FYVE/PHD zinc finger superfamily protein, putative isoform 1 OS=Cucumis mel...	[more]
A0A2K1XB26	2.6e-16	70.77	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G053400 PE=4 ...	[more]
A0A2C9V7E1	2.6e-16	73.85	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_09G026700 PE=4 SV=...	[more]
A0A6P6AMB2	5.8e-16	70.77	uncharacterized protein LOC111310902 isoform X1 OS=Durio zibethinus OX=66656 GN=...	[more]

BLAST of MS016636.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52105.1	7.7e-13	53.85	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36616	BNAC07G32700D PROTEIN	coord: 1..64
None	No IPR available	PANTHER	PTHR36616:SF5	DIS3-EXONUCLEASE-LIKE PROTEIN	coord: 1..64

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS016636	MS016636	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS016636.1-cds	MS016636.1-cds-scaffold587:212993..213193	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS016636.1	MS016636.1-protein	polypeptide