Sequences
The following sequences are available for this feature:
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTAACACTCATGCAGCTTGTGGTAACCAAGAAAGTGGTAGAGGTATGGGGCTCCTCTTGAGAGACTCCTCCAATCGTATGATGGTCACTCAATCTCTTTTCCTGCCGGTTTCTTATATTCTAGAATTTTGTGCCATTCTTGAAGGGATTAGCCTTGTCCGATCTCTCAGATACTCACACATTATTGTTGAATCGGATTCCTTTGAAGCTATCAAACTTCTTTCGGGAAGACGAACTCATTTGGTGATGGATGGAAGT
ATTAACACTCATGCAGCTTGTGGTAACCAAGAAAGTGGTAGAGGTATGGGGCTCCTCTTGAGAGACTCCTCCAATCGTATGATGGTCACTCAATCTCTTTTCCTGCCGGTTTCTTATATTCTAGAATTTTGTGCCATTCTTGAAGGGATTAGCCTTGTCCGATCTCTCAGATACTCACACATTATTGTTGAATCGGATTCCTTTGAAGCTATCAAACTTCTTTCGGGAAGACGAACTCATTTGGTGATGGATGGAAGT
ATTAACACTCATGCAGCTTGTGGTAACCAAGAAAGTGGTAGAGGTATGGGGCTCCTCTTGAGAGACTCCTCCAATCGTATGATGGTCACTCAATCTCTTTTCCTGCCGGTTTCTTATATTCTAGAATTTTGTGCCATTCTTGAAGGGATTAGCCTTGTCCGATCTCTCAGATACTCACACATTATTGTTGAATCGGATTCCTTTGAAGCTATCAAACTTCTTTCGGGAAGACGAACTCATTTGGTGATGGATGGAAGT
INTHAACGNQESGRGMGLLLRDSSNRMMVTQSLFLPVSYILEFCAILEGISLVRSLRYSHIIVESDSFEAIKLLSGRRTHLVMDGS
Homology
BLAST of MS016251.1 vs. NCBI nr
Match:
XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])
HSP 1 Score: 54.7 bits (130), Expect = 4.6e-04
Identity = 30/79 (37.97%), Postives = 48/79 (60.76%), Query Frame = 0
BLAST of MS016251.1 vs. ExPASy TrEMBL
Match:
A0A6J1BQ49 (uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004786 PE=4 SV=1)
HSP 1 Score: 54.7 bits (130), Expect = 2.2e-04
Identity = 30/79 (37.97%), Postives = 48/79 (60.76%), Query Frame = 0
The following BLAST results are available for this feature:
Match Name E-value Identity Description
XP_022131661.1 4.6e-04 37.97 uncharacterized protein LOC111004786 [Momordica charantia] [more]
Match Name E-value Identity Description
Match Name E-value Identity Description
A0A6J1BQ49 2.2e-04 37.97 uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
A T T A A C A C T C A T G C A G C T T G T G G T A A C C A A G A A A G T G G T A G A G G T A T G G G G C T C C T C T T G A G A G A C T C C T C C A A T C G T A T G A T G G T C A C T C A A T C T C T T T T C C T G C C G G T T T C T T A T A T T C T A G A A T T T T G T G C C A T T C T T G A A G G G A T T A G C C T T G T C C G A T C T C T C A G A T A C T C A C A C A T T A T T G T T G A A T C G G A T T C C T T T G A A G C T A T C A A A C T T C T T T C G G G A A G A C G A A C T C A T T T G G T G A T G G A T G G A A G T 20 40 60 80 100 120 140 160 180 200 220 240 Expect = 2.0E-6 / Score = 27.6 Expect = 5.2E-6 / Score = 28.5 Expect = 5.18975E-11 / Score = 52.3164 Score = Sequence PF13456 G3DSA:3.30.420.10 cd06222 SSF53098
IPR Term IPR Description Source Source Term Source Description Alignment
IPR002156 Ribonuclease H domain PFAM PF13456 RVT_3 coord: 4..79 IPR036397 Ribonuclease H superfamily GENE3D 3.30.420.10 coord: 1..82 IPR044730 Ribonuclease H-like domain, plant type CDD cd06222 RNase_H_like coord: 1..80 IPR012337 Ribonuclease H-like superfamily SUPERFAMILY 53098 Ribonuclease H-like coord: 1..76
Relationships
This mRNA is a part of the following gene feature(s):
Feature Name Unique Name Type
MS016251 MS016251 gene
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Type
MS016251.1-cds MS016251.1-cds-scaffold9_2:1427581..1427838 CDS
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Type
MS016251.1 MS016251.1-protein polypeptide
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category
Term Accession
Term Name
molecular_function
GO:0003676 nucleic acid binding
molecular_function
GO:0004523 RNA-DNA hybrid ribonuclease activity
