MS016202.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS016202.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Calcium-binding EF-hand
Location	scaffold9_2: 1046446 .. 1046871 (-)
Sequence length	426
RNA-Seq Expression	MS016202.1
Synteny	MS016202.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTGGTCATAATCGACGGATCGACGGTGAAGAACTTCGTGGACGACGAATCTCACTTCCAGAAGAGTGTGGACAGCGCCTTCGCGGCTCTGGATCTGAACAAGGACGGCGTTCTGTCCCGATCGGAGCTCCGGAAGGCGTTCGAAACGCTCCGCCTGATCGAGACTCACTACGGCGTCGACGTCGCCACCACGCCGGAGCAACTCACTCAGCTCTACGATTCCATCTTCGAGAAGTTCGATTGCGACAAAAGCGGCACCGTCGATGCGGATGAGTTCCGCACCGAGATGAAGAACATCTTGCTCGCCATAGCCGACGGATTGGGCTCCTCGCCGATTCAGATGGCGCTCGACGACGGCGATCAGAGTTTCCTCAAGCAAGCTGCGGATCTCGAGGCTTCCAAGCTCGCTCAAGCTTCTACC

mRNA sequence

ATGGCGGTGGTCATAATCGACGGATCGACGGTGAAGAACTTCGTGGACGACGAATCTCACTTCCAGAAGAGTGTGGACAGCGCCTTCGCGGCTCTGGATCTGAACAAGGACGGCGTTCTGTCCCGATCGGAGCTCCGGAAGGCGTTCGAAACGCTCCGCCTGATCGAGACTCACTACGGCGTCGACGTCGCCACCACGCCGGAGCAACTCACTCAGCTCTACGATTCCATCTTCGAGAAGTTCGATTGCGACAAAAGCGGCACCGTCGATGCGGATGAGTTCCGCACCGAGATGAAGAACATCTTGCTCGCCATAGCCGACGGATTGGGCTCCTCGCCGATTCAGATGGCGCTCGACGACGGCGATCAGAGTTTCCTCAAGCAAGCTGCGGATCTCGAGGCTTCCAAGCTCGCTCAAGCTTCTACC

Coding sequence (CDS)

ATGGCGGTGGTCATAATCGACGGATCGACGGTGAAGAACTTCGTGGACGACGAATCTCACTTCCAGAAGAGTGTGGACAGCGCCTTCGCGGCTCTGGATCTGAACAAGGACGGCGTTCTGTCCCGATCGGAGCTCCGGAAGGCGTTCGAAACGCTCCGCCTGATCGAGACTCACTACGGCGTCGACGTCGCCACCACGCCGGAGCAACTCACTCAGCTCTACGATTCCATCTTCGAGAAGTTCGATTGCGACAAAAGCGGCACCGTCGATGCGGATGAGTTCCGCACCGAGATGAAGAACATCTTGCTCGCCATAGCCGACGGATTGGGCTCCTCGCCGATTCAGATGGCGCTCGACGACGGCGATCAGAGTTTCCTCAAGCAAGCTGCGGATCTCGAGGCTTCCAAGCTCGCTCAAGCTTCTACC

Protein sequence

MAVVIIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYGVDVATTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDDGDQSFLKQAADLEASKLAQAST

Homology

[Close]

BLAST of MS016202.1 vs. NCBI nr
Match: XP_022153410.1 (uncharacterized protein LOC111020923 [Momordica charantia])

HSP 1 Score: 272.7 bits (696), Expect = 1.8e-69
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MAVVIIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYG 60
           MAVVIIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYG
Sbjct: 1   MAVVIIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYG 60

Query: 61  VDVATTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDD 120
           VDVATTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDD
Sbjct: 61  VDVATTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDD 120

Query: 121 GDQSFLKQAADLEASKLAQAST 143
           GDQSFLKQAADLE SKLAQAST
Sbjct: 121 GDQSFLKQAADLEVSKLAQAST 142

[Close]

BLAST of MS016202.1 vs. NCBI nr
Match: XP_038905172.1 (uncharacterized protein LOC120091281 [Benincasa hispida])

HSP 1 Score: 259.6 bits (662), Expect = 1.6e-65
Identity = 131/142 (92.25%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 1   MAVVIIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYG 60
           MAVV+IDGSTV+NFV+DESHF+KS+D AFAALDLN DGVLSRSELRKAFETLRLIETH+G
Sbjct: 1   MAVVVIDGSTVRNFVNDESHFKKSIDEAFAALDLNNDGVLSRSELRKAFETLRLIETHFG 60

Query: 61  VDVATTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDD 120
           VDV TTPEQLTQLYDSIFE+FDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDD
Sbjct: 61  VDVTTTPEQLTQLYDSIFEQFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDD 120

Query: 121 GDQSFLKQAADLEASKLAQAST 143
           GDQSFLKQAADLEASKLAQ+ST
Sbjct: 121 GDQSFLKQAADLEASKLAQSST 142

[Close]

BLAST of MS016202.1 vs. NCBI nr
Match: KAE8650949.1 (hypothetical protein Csa_002692 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 2.9e-64
Identity = 128/142 (90.14%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MAVVIIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYG 60
           MAVV++DGSTV+NFV+DESHF KS+D AFA+LDLN DGVLSRSELRKAFETLRLIETH+G
Sbjct: 64  MAVVVLDGSTVRNFVNDESHFNKSIDDAFASLDLNNDGVLSRSELRKAFETLRLIETHFG 123

Query: 61  VDVATTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDD 120
           VDVATTPEQLTQLYDSIFE+FDCDKSGTVDA+EFRTEMKNILLAIADGLGSSPIQMALDD
Sbjct: 124 VDVATTPEQLTQLYDSIFEQFDCDKSGTVDAEEFRTEMKNILLAIADGLGSSPIQMALDD 183

Query: 121 GDQSFLKQAADLEASKLAQAST 143
           GDQSFLKQAADLEASKL Q+ST
Sbjct: 184 GDQSFLKQAADLEASKLRQSST 205

[Close]

BLAST of MS016202.1 vs. NCBI nr
Match: XP_004153292.1 (uncharacterized protein LOC101213961 [Cucumis sativus])

HSP 1 Score: 255.4 bits (651), Expect = 2.9e-64
Identity = 128/142 (90.14%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MAVVIIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYG 60
           MAVV++DGSTV+NFV+DESHF KS+D AFA+LDLN DGVLSRSELRKAFETLRLIETH+G
Sbjct: 1   MAVVVLDGSTVRNFVNDESHFNKSIDDAFASLDLNNDGVLSRSELRKAFETLRLIETHFG 60

Query: 61  VDVATTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDD 120
           VDVATTPEQLTQLYDSIFE+FDCDKSGTVDA+EFRTEMKNILLAIADGLGSSPIQMALDD
Sbjct: 61  VDVATTPEQLTQLYDSIFEQFDCDKSGTVDAEEFRTEMKNILLAIADGLGSSPIQMALDD 120

Query: 121 GDQSFLKQAADLEASKLAQAST 143
           GDQSFLKQAADLEASKL Q+ST
Sbjct: 121 GDQSFLKQAADLEASKLRQSST 142

[Close]

BLAST of MS016202.1 vs. NCBI nr
Match: KAG7018108.1 (hypothetical protein SDJN02_19976, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 254.2 bits (648), Expect = 6.6e-64
Identity = 129/141 (91.49%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAVVIIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYG 60
           MAVV+IDGSTV+NFV+DESHF+KSVD AFAALDLN DGVLSRSELRKAFETLRLIETH+G
Sbjct: 1   MAVVVIDGSTVRNFVNDESHFKKSVDEAFAALDLNNDGVLSRSELRKAFETLRLIETHFG 60

Query: 61  VDVATTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDD 120
           VDV T PE+LTQLYDSIFEKFDCDKSGTVDA+EFRTEMKNILLAIADGLGSSPIQMALDD
Sbjct: 61  VDVVTPPEKLTQLYDSIFEKFDCDKSGTVDAEEFRTEMKNILLAIADGLGSSPIQMALDD 120

Query: 121 GDQSFLKQAADLEASKLAQAS 142
           GDQSFLKQAADLEASKLAQ+S
Sbjct: 121 GDQSFLKQAADLEASKLAQSS 141

[Close]

BLAST of MS016202.1 vs. ExPASy TrEMBL
Match: A0A6J1DGS0 (uncharacterized protein LOC111020923 OS=Momordica charantia OX=3673 GN=LOC111020923 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 8.6e-70
Identity = 141/142 (99.30%), Postives = 141/142 (99.30%), Query Frame = 0


Query: 1   MAVVIIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYG 60
           MAVVIIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYG
Sbjct: 1   MAVVIIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYG 60

Query: 61  VDVATTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDD 120
           VDVATTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDD
Sbjct: 61  VDVATTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDD 120

Query: 121 GDQSFLKQAADLEASKLAQAST 143
           GDQSFLKQAADLE SKLAQAST
Sbjct: 121 GDQSFLKQAADLEVSKLAQAST 142

[Close]

BLAST of MS016202.1 vs. ExPASy TrEMBL
Match: A0A0A0L9X6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G706670 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.4e-64
Identity = 128/142 (90.14%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MAVVIIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYG 60
           MAVV++DGSTV+NFV+DESHF KS+D AFA+LDLN DGVLSRSELRKAFETLRLIETH+G
Sbjct: 1   MAVVVLDGSTVRNFVNDESHFNKSIDDAFASLDLNNDGVLSRSELRKAFETLRLIETHFG 60

Query: 61  VDVATTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDD 120
           VDVATTPEQLTQLYDSIFE+FDCDKSGTVDA+EFRTEMKNILLAIADGLGSSPIQMALDD
Sbjct: 61  VDVATTPEQLTQLYDSIFEQFDCDKSGTVDAEEFRTEMKNILLAIADGLGSSPIQMALDD 120

Query: 121 GDQSFLKQAADLEASKLAQAST 143
           GDQSFLKQAADLEASKL Q+ST
Sbjct: 121 GDQSFLKQAADLEASKLRQSST 142

[Close]

BLAST of MS016202.1 vs. ExPASy TrEMBL
Match: A0A6J1F6Q4 (uncharacterized protein LOC111441377 OS=Cucurbita moschata OX=3662 GN=LOC111441377 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.2e-64
Identity = 129/141 (91.49%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MAVVIIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYG 60
           MAVV+IDGSTV+NFV+DESHF+KSVD AFAALDLN DGVLSRSELRKAFETLRLIETH+G
Sbjct: 1   MAVVVIDGSTVRNFVNDESHFKKSVDEAFAALDLNNDGVLSRSELRKAFETLRLIETHFG 60

Query: 61  VDVATTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDD 120
           VDV T PE+LTQLYDSIFEKFDCDKSGTVDA+EFRTEMKNILLAIADGLGSSPIQMALDD
Sbjct: 61  VDVVTPPEKLTQLYDSIFEKFDCDKSGTVDAEEFRTEMKNILLAIADGLGSSPIQMALDD 120

Query: 121 GDQSFLKQAADLEASKLAQAS 142
           GDQSFLKQAADLEASKLAQ+S
Sbjct: 121 GDQSFLKQAADLEASKLAQSS 141

[Close]

BLAST of MS016202.1 vs. ExPASy TrEMBL
Match: A0A5A7UE76 (Calcium-binding EF-hand OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold148G00320 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.1e-64
Identity = 127/142 (89.44%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MAVVIIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYG 60
           MAVV+IDGSTV+NFV+DE HF KS+D AFA+LDLN DGVLSRSELRKAFETLRLIETH+G
Sbjct: 1   MAVVVIDGSTVRNFVNDEPHFNKSIDDAFASLDLNNDGVLSRSELRKAFETLRLIETHFG 60

Query: 61  VDVATTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDD 120
           VDVATTPEQLTQLYDSIFE+FDCDKSGTVDA+EFRTEMKNILLAIADGLGSSPIQMALDD
Sbjct: 61  VDVATTPEQLTQLYDSIFEQFDCDKSGTVDAEEFRTEMKNILLAIADGLGSSPIQMALDD 120

Query: 121 GDQSFLKQAADLEASKLAQAST 143
           GD+SFLKQAADLEASKL Q+ST
Sbjct: 121 GDRSFLKQAADLEASKLGQSST 142

[Close]

BLAST of MS016202.1 vs. ExPASy TrEMBL
Match: A0A1S3CGR2 (uncharacterized protein LOC103500282 OS=Cucumis melo OX=3656 GN=LOC103500282 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.1e-64
Identity = 127/142 (89.44%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MAVVIIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYG 60
           MAVV+IDGSTV+NFV+DE HF KS+D AFA+LDLN DGVLSRSELRKAFETLRLIETH+G
Sbjct: 1   MAVVVIDGSTVRNFVNDEPHFNKSIDDAFASLDLNNDGVLSRSELRKAFETLRLIETHFG 60

Query: 61  VDVATTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDD 120
           VDVATTPEQLTQLYDSIFE+FDCDKSGTVDA+EFRTEMKNILLAIADGLGSSPIQMALDD
Sbjct: 61  VDVATTPEQLTQLYDSIFEQFDCDKSGTVDAEEFRTEMKNILLAIADGLGSSPIQMALDD 120

Query: 121 GDQSFLKQAADLEASKLAQAST 143
           GD+SFLKQAADLEASKL Q+ST
Sbjct: 121 GDRSFLKQAADLEASKLGQSST 142

[Close]

BLAST of MS016202.1 vs. TAIR 10
Match: AT2G44310.1 (Calcium-binding EF-hand family protein )

HSP 1 Score: 208.4 bits (529), Expect = 3.8e-54
Identity = 104/142 (73.24%), Postives = 124/142 (87.32%), Query Frame = 0


Query: 1   MAVVIIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYG 60
           M VV+IDGSTV++FVDDE  F+KSVD  FAALDLNKDGVLSRSELRKAFE++RL+E+H+G
Sbjct: 1   MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60

Query: 61  VDVATTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDD 120
           VDV T  ++LT LYDSIFEKFD D+SG+VD +EFR+EMK I+LAIADGLGS PI M LDD
Sbjct: 61  VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120

Query: 121 GDQSFLKQAADLEASKLAQAST 143
            D +FLK+AADLEASKL +AS+
Sbjct: 121 DDDNFLKKAADLEASKLEKASS 142

[Close]

BLAST of MS016202.1 vs. TAIR 10
Match: AT5G28830.1 (calcium-binding EF hand family protein )

HSP 1 Score: 62.8 bits (151), Expect = 2.6e-10
Identity = 37/119 (31.09%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 1   MAVVIIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYG 60
           + V I+DG+ +K F++DE  F    ++ F  LD    G L +SE+RKA         H G
Sbjct: 101 IVVSILDGTMLKMFLEDEDDFAMLAENLFTDLDEEDKGKLCKSEIRKAL-------VHMG 160

Query: 61  VDVATTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALD 120
           V++   P     + D I +K D D    +   +F   ++ +L  IAD L   PI + L+
Sbjct: 161 VEMGVPPLSEFPILDDIIKKHDADSDEELGQAQFAELLQQVLQEIADVLHEKPITIVLN 212

[Close]

BLAST of MS016202.1 vs. TAIR 10
Match: AT1G54530.1 (Calcium-binding EF hand family protein )

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-09
Identity = 38/122 (31.15%), Postives = 64/122 (52.46%), Query Frame = 0


Query: 1   MAVVIIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYG 60
           M   +I   T+  F+ D   F+   +  F  LDL+K+G+LS SELR+    +  +E+   
Sbjct: 1   MIETVITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVESE-- 60

Query: 61  VDVATTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMAL-D 120
                  ++   +Y++IFE+F  D    +    FR  +  IL A+A G+G+SP+ M + +
Sbjct: 61  ---VAPGDETDNVYNAIFERFGED----LVPKNFRDLIAEILTAMARGIGNSPVIMVVHN 113

Query: 121 DG 122
           DG
Sbjct: 121 DG 113

[Close]

BLAST of MS016202.1 vs. TAIR 10
Match: AT4G38810.2 (Calcium-binding EF-hand family protein )

HSP 1 Score: 57.8 bits (138), Expect = 8.4e-09
Identity = 36/118 (30.51%), Postives = 56/118 (47.46%), Query Frame = 0


Query: 5   IIDGSTVKNFVDDESHFQKSVDSAFAALDLNKDGVLSRSELRKAFETLRLIETHYGVDVA 64
           ++DGS +   V++E  F K V+  F  LD ++DG LS +EL+ A      I    G+   
Sbjct: 14  VLDGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTELQPAVAD---IGAALGLPAQ 73

Query: 65  TTPEQLTQLYDSIFEKFDCDKSGTVDADEFRTEMKNILLAIADGLGSSPIQMALDDGD 123
            T      +Y  +  +F       V   EF+  + +ILL +A GL   PI +   DG+
Sbjct: 74  GTSPDSDHIYSEVLNEFTHGSQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRMDGE 128

The following BLAST results are available for this feature:

BLAST of MS016202.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153410.1	1.8e-69	99.30	uncharacterized protein LOC111020923 [Momordica charantia]	[more]
XP_038905172.1	1.6e-65	92.25	uncharacterized protein LOC120091281 [Benincasa hispida]	[more]
KAE8650949.1	2.9e-64	90.14	hypothetical protein Csa_002692 [Cucumis sativus]	[more]
XP_004153292.1	2.9e-64	90.14	uncharacterized protein LOC101213961 [Cucumis sativus]	[more]
KAG7018108.1	6.6e-64	91.49	hypothetical protein SDJN02_19976, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MS016202.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS016202.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DGS0	8.6e-70	99.30	uncharacterized protein LOC111020923 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A0A0L9X6	1.4e-64	90.14	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G706670 PE=4 SV=1	[more]
A0A6J1F6Q4	3.2e-64	91.49	uncharacterized protein LOC111441377 OS=Cucurbita moschata OX=3662 GN=LOC1114413...	[more]
A0A5A7UE76	7.1e-64	89.44	Calcium-binding EF-hand OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CGR2	7.1e-64	89.44	uncharacterized protein LOC103500282 OS=Cucumis melo OX=3656 GN=LOC103500282 PE=...	[more]

BLAST of MS016202.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44310.1	3.8e-54	73.24	Calcium-binding EF-hand family protein	[more]
AT5G28830.1	2.6e-10	31.09	calcium-binding EF hand family protein	[more]
AT1G54530.1	4.9e-09	31.15	Calcium-binding EF hand family protein	[more]
AT4G38810.2	8.4e-09	30.51	Calcium-binding EF-hand family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 24..52 e-value: 0.044 score: 22.9 coord: 73..101 e-value: 0.0072 score: 25.5
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 28..98 e-value: 7.5E-11 score: 42.3
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 69..104 score: 11.165957
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 20..55 score: 10.998585
IPR002048	EF-hand domain	CDD	cd00051	EFh	coord: 28..99 e-value: 7.68019E-8 score: 44.4609
None	No IPR available	GENE3D	1.10.238.10		coord: 8..104 e-value: 3.8E-15 score: 58.1
None	No IPR available	PANTHER	PTHR34574:SF5	CALCIUM-BINDING EF-HAND FAMILY PROTEIN	coord: 1..139
None	No IPR available	PANTHER	PTHR34574	CALCIUM-BINDING EF-HAND FAMILY PROTEIN-RELATED	coord: 1..139
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 82..94
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 33..45
IPR011992	EF-hand domain pair	SUPERFAMILY	47473	EF-hand	coord: 12..103

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS016202	MS016202	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS016202.1-cds	MS016202.1-cds-scaffold9_2:1046446..1046871	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS016202.1	MS016202.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding