MS016142.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS016142.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II CP43 reaction center protein
Location	scaffold9_2: 656556 .. 656666 (+)
Sequence length	111
RNA-Seq Expression	MS016142.1
Synteny	MS016142.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCAAGACCGGAGAAGTTATTTTTGGAGGAGACTATGCGTTTTTGGGATCTGCATGCTCCCTGGTTAGAACCACTAAGGGGTCCATACGATTTTCCCGATCTAAATAAAGTA

mRNA sequence

CCAAGACCGGAGAAGTTATTTTTGGAGGAGACTATGCGTTTTTGGGATCTGCATGCTCCCTGGTTAGAACCACTAAGGGGTCCATACGATTTTCCCGATCTAAATAAAGTA

Coding sequence (CDS)

CCAAGACCGGAGAAGTTATTTTTGGAGGAGACTATGCGTTTTTGGGATCTGCATGCTCCCTGGTTAGAACCACTAAGGGGTCCATACGATTTTCCCGATCTAAATAAAGTA

Protein sequence

PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV

Homology

[Close]

BLAST of MS016142.1 vs. NCBI nr
Match: QUV75432.1 (photosystem II CP43 chlorophyll apoprotein [Ormosia fordiana])

HSP 1 Score: 56.2 bits (134), Expect = 6.8e-05
Identity = 25/37 (67.57%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 1   PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV 38
           P  E +F  ETMRFWDLHAPWLEPLRGP    DLN++
Sbjct: 345 PTGEVIFGGETMRFWDLHAPWLEPLRGPNGL-DLNRL 380

[Close]

BLAST of MS016142.1 vs. NCBI nr
Match: XP_005704990.1 ([pt] photosystem II PsbC protein [Galdieria sulphuraria] >EME28470.1 [pt] photosystem II PsbC protein [Galdieria sulphuraria])

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 1   PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV 38
           P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Sbjct: 644 PSGEVIFGGETMRFWDLRAPWLEPLRGPNGL-DLNKI 679

[Close]

BLAST of MS016142.1 vs. NCBI nr
Match: QUE28369.1 (PsbC [Pseudoerythrocladia kornmannii])

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 1   PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV 38
           P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Sbjct: 333 PSGEVIFGGETMRFWDLRAPWLEPLRGPNGL-DLNKI 368

[Close]

BLAST of MS016142.1 vs. NCBI nr
Match: ARO91403.1 (photosystem II 44 kDa protein [Rhodochaete parvula])

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 1   PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV 38
           P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Sbjct: 359 PSGEVIFGGETMRFWDLRAPWLEPLRGPNGL-DLNKI 394

[Close]

BLAST of MS016142.1 vs. NCBI nr
Match: QUE30075.1 (PsbC [Porphyrostromium boryanum])

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 1   PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV 38
           P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Sbjct: 333 PSGEVIFGGETMRFWDLRAPWLEPLRGPNGL-DLNKI 368

[Close]

BLAST of MS016142.1 vs. ExPASy Swiss-Prot
Match: P28254 (Photosystem II CP43 reaction center protein OS=Galdieria sulphuraria OX=130081 GN=psbC PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-07
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 1   PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV 38
           P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Sbjct: 345 PSGEVIFGGETMRFWDLRAPWLEPLRGPNGL-DLNKI 380

[Close]

BLAST of MS016142.1 vs. ExPASy Swiss-Prot
Match: Q19VC6 (Photosystem II CP43 reaction center protein OS=Chlorokybus atmophyticus OX=3144 GN=psbC PE=3 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 4.4e-07
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 1   PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV 38
           P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Sbjct: 333 PTGEIIFGGETMRFWDLRAPWLEPLRGPNGL-DLNKL 368

[Close]

BLAST of MS016142.1 vs. ExPASy Swiss-Prot
Match: Q8WI20 (Photosystem II CP43 reaction center protein OS=Psilotum nudum OX=3240 GN=psbC PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.4e-07
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 1   PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV 38
           P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Sbjct: 333 PTGEIIFGGETMRFWDLRAPWLEPLRGPNGL-DLNKL 368

[Close]

BLAST of MS016142.1 vs. ExPASy Swiss-Prot
Match: P51356 (Photosystem II CP43 reaction center protein OS=Porphyra purpurea OX=2787 GN=psbC PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.8e-07
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 1   PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV 38
           P  E +F  ETMRFWDL APW+EPLRGP    DLNK+
Sbjct: 359 PSGEIIFGGETMRFWDLRAPWVEPLRGPNGL-DLNKI 394

[Close]

BLAST of MS016142.1 vs. ExPASy Swiss-Prot
Match: Q1XDD1 (Photosystem II CP43 reaction center protein OS=Pyropia yezoensis OX=2788 GN=psbC PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.8e-07
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 1   PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV 38
           P  E +F  ETMRFWDL APW+EPLRGP    DLNK+
Sbjct: 360 PSGEIIFGGETMRFWDLRAPWVEPLRGPNGL-DLNKI 395

[Close]

BLAST of MS016142.1 vs. ExPASy TrEMBL
Match: D4NY67 (Photosystem II CP43 reaction center protein OS=Galdieria sulphuraria OX=130081 GN=psbC PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.4e-05
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 1   PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV 38
           P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Sbjct: 345 PSGEVIFGGETMRFWDLRAPWLEPLRGPNGL-DLNKI 380

[Close]

BLAST of MS016142.1 vs. ExPASy TrEMBL
Match: A0A1X9PWJ5 (Photosystem II CP43 reaction center protein OS=Rhodochaete parvula OX=110510 GN=psbC PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.4e-05
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 1   PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV 38
           P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Sbjct: 359 PSGEVIFGGETMRFWDLRAPWLEPLRGPNGL-DLNKI 394

[Close]

BLAST of MS016142.1 vs. ExPASy TrEMBL
Match: A0A220T0Q8 (Photosystem II CP43 reaction center protein OS=Rhodochaete parvula OX=110510 GN=psbC PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.4e-05
Identity = 25/37 (67.57%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 1   PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV 38
           P  E +F  ETMRFWDL APWLEPLRGP    DLNK+
Sbjct: 348 PSGEVIFGGETMRFWDLRAPWLEPLRGPNGL-DLNKI 383

[Close]

BLAST of MS016142.1 vs. ExPASy TrEMBL
Match: A0A3S5WMT5 (Photosystem II CP43 reaction center protein (Fragment) OS=Cymatosira belgica OX=49246 GN=psbC PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.4e-05
Identity = 24/37 (64.86%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 1   PRPEKLFLEETMRFWDLHAPWLEPLRGPYDFPDLNKV 38
           PR E +F  ETMRFWDL APW+EPLRGP    D+NK+
Sbjct: 291 PRGEIIFGGETMRFWDLRAPWVEPLRGPNGL-DINKI 326

[Close]

BLAST of MS016142.1 vs. ExPASy TrEMBL
Match: E0CP24 (F-box domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g09110 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.4e-05
Identity = 22/28 (78.57%), Postives = 23/28 (82.14%), Query Frame = 0


Query: 1   PRPEKLFLEETMRFWDLHAPWLEPLRGP 29
           P  E +F  ETMRFWDLHAPWLEPLRGP
Sbjct: 78  PTREVIFRRETMRFWDLHAPWLEPLRGP 105

[Close]

BLAST of MS016142.1 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 50.4 bits (119), Expect = 3.5e-07
Identity = 21/28 (75.00%), Postives = 22/28 (78.57%), Query Frame = 0


Query: 1   PRPEKLFLEETMRFWDLHAPWLEPLRGP 29
           P  E +F  ETMRFWDL APWLEPLRGP
Sbjct: 345 PTGEVIFGGETMRFWDLRAPWLEPLRGP 372

The following BLAST results are available for this feature:

BLAST of MS016142.1 vs. NCBI nr


Match Name	E-value	Identity	Description
QUV75432.1	6.8e-05	67.57	photosystem II CP43 chlorophyll apoprotein [Ormosia fordiana]	[more]
XP_005704990.1	1.5e-04	67.57	[pt] photosystem II PsbC protein [Galdieria sulphuraria] >EME28470.1 [pt] photos...	[more]
QUE28369.1	1.5e-04	67.57	PsbC [Pseudoerythrocladia kornmannii]	[more]
ARO91403.1	1.5e-04	67.57	photosystem II 44 kDa protein [Rhodochaete parvula]	[more]
QUE30075.1	1.5e-04	67.57	PsbC [Porphyrostromium boryanum]	[more]

BLAST of MS016142.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P28254	2.0e-07	67.57	Photosystem II CP43 reaction center protein OS=Galdieria sulphuraria OX=130081 G...	[more]
Q19VC6	4.4e-07	67.57	Photosystem II CP43 reaction center protein OS=Chlorokybus atmophyticus OX=3144 ...	[more]
Q8WI20	4.4e-07	67.57	Photosystem II CP43 reaction center protein OS=Psilotum nudum OX=3240 GN=psbC PE...	[more]
P51356	5.8e-07	64.86	Photosystem II CP43 reaction center protein OS=Porphyra purpurea OX=2787 GN=psbC...	[more]
Q1XDD1	5.8e-07	64.86	Photosystem II CP43 reaction center protein OS=Pyropia yezoensis OX=2788 GN=psbC...	[more]

BLAST of MS016142.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
D4NY67	7.4e-05	67.57	Photosystem II CP43 reaction center protein OS=Galdieria sulphuraria OX=130081 G...	[more]
A0A1X9PWJ5	7.4e-05	67.57	Photosystem II CP43 reaction center protein OS=Rhodochaete parvula OX=110510 GN=...	[more]
A0A220T0Q8	7.4e-05	67.57	Photosystem II CP43 reaction center protein OS=Rhodochaete parvula OX=110510 GN=...	[more]
A0A3S5WMT5	7.4e-05	64.86	Photosystem II CP43 reaction center protein (Fragment) OS=Cymatosira belgica OX=...	[more]
E0CP24	7.4e-05	78.57	F-box domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_18s0001g09110 ...	[more]

BLAST of MS016142.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00280.1	3.5e-07	75.00	photosystem II reaction center protein C	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044900	Photosystem II CP43 reaction centre protein superfamily	GENE3D	1.10.10.670	photosystem ii from thermosynechococcus elongatus	coord: 1..37 e-value: 2.5E-8 score: 35.5
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 1..32

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS016142	MS016142	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS016142.1-cds	MS016142.1-cds-scaffold9_2:656556..656666	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS016142.1	MS016142.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding