MS014554.1 (mRNA) Bitter gourd (TR) v1

Overview
NameMS014554.1
TypemRNA
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold553: 826919 .. 827071 (+)
Sequence length153
RNA-Seq ExpressionMS014554.1
SyntenyMS014554.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATCTGGTCAAGAAGTCTCAAAGATGTTATCCATTGAGATAATGGTAGAATATAAAATTTGGGTGGAATCTGAAACCTTCAATATATTAGTCAATTCTGTCGAGATGTTCAACCCTCTAAACAAGAGAGTCCTAATTTCTCTAAGGGTGCCC

mRNA sequence

AAATCTGGTCAAGAAGTCTCAAAGATGTTATCCATTGAGATAATGGTAGAATATAAAATTTGGGTGGAATCTGAAACCTTCAATATATTAGTCAATTCTGTCGAGATGTTCAACCCTCTAAACAAGAGAGTCCTAATTTCTCTAAGGGTGCCC

Coding sequence (CDS)

AAATCTGGTCAAGAAGTCTCAAAGATGTTATCCATTGAGATAATGGTAGAATATAAAATTTGGGTGGAATCTGAAACCTTCAATATATTAGTCAATTCTGTCGAGATGTTCAACCCTCTAAACAAGAGAGTCCTAATTTCTCTAAGGGTGCCC

Protein sequence

KSGQEVSKMLSIEIMVEYKIWVESETFNILVNSVEMFNPLNKRVLISLRVP
Homology
BLAST of MS014554.1 vs. NCBI nr
Match: XP_038879512.1 (uncharacterized protein LOC120071354 isoform X4 [Benincasa hispida])

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 1   KSGQEVSKMLSIEIMVEYKIWVESETFNILVNSVEMFNPLNKRVLISLRVP 52
           K GQEV+KM+ ++ MVE KIWVES T NILVNSVEM NPLN+RVLI LR+P
Sbjct: 100 KYGQEVAKMIFMKTMVECKIWVESATINILVNSVEMVNPLNQRVLIFLRMP 150

BLAST of MS014554.1 vs. NCBI nr
Match: XP_038879509.1 (uncharacterized protein LOC120071354 isoform X1 [Benincasa hispida])

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 1   KSGQEVSKMLSIEIMVEYKIWVESETFNILVNSVEMFNPLNKRVLISLRVP 52
           K GQEV+KM+ ++ MVE KIWVES T NILVNSVEM NPLN+RVLI LR+P
Sbjct: 514 KYGQEVAKMIFMKTMVECKIWVESATINILVNSVEMVNPLNQRVLIFLRMP 564

BLAST of MS014554.1 vs. NCBI nr
Match: XP_038879511.1 (uncharacterized protein LOC120071354 isoform X3 [Benincasa hispida])

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 1   KSGQEVSKMLSIEIMVEYKIWVESETFNILVNSVEMFNPLNKRVLISLRVP 52
           K GQEV+KM+ ++ MVE KIWVES T NILVNSVEM NPLN+RVLI LR+P
Sbjct: 514 KYGQEVAKMIFMKTMVECKIWVESATINILVNSVEMVNPLNQRVLIFLRMP 564

BLAST of MS014554.1 vs. NCBI nr
Match: XP_038879510.1 (uncharacterized protein LOC120071354 isoform X2 [Benincasa hispida])

HSP 1 Score: 72.0 bits (175), Expect = 1.7e-09
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 1   KSGQEVSKMLSIEIMVEYKIWVESETFNILVNSVEMFNPLNKRVLISLRVP 52
           K GQEV+KM+ ++ MVE KIWVES T NILVNSVEM NPLN+RVLI LR+P
Sbjct: 358 KYGQEVAKMIFMKTMVECKIWVESATINILVNSVEMVNPLNQRVLIFLRMP 408

BLAST of MS014554.1 vs. NCBI nr
Match: XP_031736165.1 (uncharacterized protein LOC101204937 isoform X4 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 4.8e-09
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 1   KSGQEVSKMLSIEIMVEYKIWVESETFNILVNSVEMFNPLNKRVLISLRVP 52
           K GQE++KM+ I+ MVE KIWVES T NI+VNS+EM NPLN+RVLI L++P
Sbjct: 217 KYGQEIAKMIFIKTMVECKIWVESATINIVVNSIEMLNPLNQRVLIFLKMP 267

BLAST of MS014554.1 vs. ExPASy TrEMBL
Match: A0A0A0M027 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652810 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-09
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 1   KSGQEVSKMLSIEIMVEYKIWVESETFNILVNSVEMFNPLNKRVLISLRVP 52
           K GQE++KM+ I+ MVE KIWVES T NI+VNS+EM NPLN+RVLI L++P
Sbjct: 168 KYGQEIAKMIFIKTMVECKIWVESATINIVVNSIEMLNPLNQRVLIFLKMP 218

BLAST of MS014554.1 vs. ExPASy TrEMBL
Match: A0A1S3B8J3 (putative vacuolar protein sorting-associated protein 13A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487212 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-09
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 1   KSGQEVSKMLSIEIMVEYKIWVESETFNILVNSVEMFNPLNKRVLISLRVP 52
           K GQE++KM+ I+ MVE KIWVES T NI+VNS+EM NPLN+RVLI L++P
Sbjct: 512 KYGQEIAKMIFIKTMVECKIWVESATINIVVNSIEMLNPLNQRVLIFLKMP 562

BLAST of MS014554.1 vs. ExPASy TrEMBL
Match: A0A1S4DUY4 (uncharacterized protein LOC103487212 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487212 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-09
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 0

Query: 1   KSGQEVSKMLSIEIMVEYKIWVESETFNILVNSVEMFNPLNKRVLISLRVP 52
           K GQE++KM+ I+ MVE KIWVES T NI+VNS+EM NPLN+RVLI L++P
Sbjct: 331 KYGQEIAKMIFIKTMVECKIWVESATINIVVNSIEMLNPLNQRVLIFLKMP 381

BLAST of MS014554.1 vs. ExPASy TrEMBL
Match: A0A6J1JM44 (uncharacterized protein LOC111485823 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111485823 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.1e-09
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 1   KSGQEVSKMLSIEIMVEYKIWVESETFNILVNSVEMFNPLNKRVLISLRVP 52
           K GQEV+KM+ I+ MVE  IWVES T N+LVNS+EM NPLN+RVLI LR+P
Sbjct: 115 KYGQEVAKMIFIKTMVECNIWVESATINLLVNSIEMVNPLNQRVLIFLRMP 165

BLAST of MS014554.1 vs. ExPASy TrEMBL
Match: A0A6J1JMV4 (uncharacterized protein LOC111485823 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485823 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.1e-09
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 0

Query: 1   KSGQEVSKMLSIEIMVEYKIWVESETFNILVNSVEMFNPLNKRVLISLRVP 52
           K GQEV+KM+ I+ MVE  IWVES T N+LVNS+EM NPLN+RVLI LR+P
Sbjct: 514 KYGQEVAKMIFIKTMVECNIWVESATINLLVNSIEMVNPLNQRVLIFLRMP 564

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038879512.11.7e-0972.55uncharacterized protein LOC120071354 isoform X4 [Benincasa hispida][more]
XP_038879509.11.7e-0972.55uncharacterized protein LOC120071354 isoform X1 [Benincasa hispida][more]
XP_038879511.11.7e-0972.55uncharacterized protein LOC120071354 isoform X3 [Benincasa hispida][more]
XP_038879510.11.7e-0972.55uncharacterized protein LOC120071354 isoform X2 [Benincasa hispida][more]
XP_031736165.14.8e-0966.67uncharacterized protein LOC101204937 isoform X4 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0M0272.3e-0966.67Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G652810 PE=4 SV=1[more]
A0A1S3B8J32.3e-0966.67putative vacuolar protein sorting-associated protein 13A isoform X1 OS=Cucumis m... [more]
A0A1S4DUY42.3e-0966.67uncharacterized protein LOC103487212 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1JM443.1e-0968.63uncharacterized protein LOC111485823 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1JMV43.1e-0968.63uncharacterized protein LOC111485823 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MS014554MS014554gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MS014554.1-cdsMS014554.1-cds-scaffold553:826919..827071CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MS014554.1MS014554.1-proteinpolypeptide