MS013572.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS013572.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	signaling peptide TAXIMIN 1-like
Location	scaffold402: 2526355 .. 2526695 (-)
Sequence length	231
RNA-Seq Expression	MS013572.1
Synteny	MS013572.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTGCTGTGAGAAATGTAACTGCAGGCCTCTCGGTTTTCTTCTCGGCCTGCCGTTCGCCTTCCTTGCCCTCTTCATTGGCTTCATCGGAGCTATTATTTGGATTTTTGGGTTAGTTCGTATATATTGTACTGACATCTCTTTCTACCATTTTATAACTATTCTGTTTTTAGTTCCAATTTTAAAATTTTAGTCATCTCTTTCTTTTTCTGGTTTTGCAGATCGGTGCTGACTTGCATATGTCCTTGCTGCTTGTGTGTGACTGTGGTGGTAGAGTTTGCATTGGCTTTGATCAACGCTCCAATTCTAGTCATGAAATGGTTCACCTCCAAAATCCCATGT

mRNA sequence

TGCTGCTGTGAGAAATGTAACTGCAGGCCTCTCGGTTTTCTTCTCGGCCTGCCGTTCGCCTTCCTTGCCCTCTTCATTGGCTTCATCGGAGCTATTATTTGGATTTTTGGATCGGTGCTGACTTGCATATGTCCTTGCTGCTTGTGTGTGACTGTGGTGGTAGAGTTTGCATTGGCTTTGATCAACGCTCCAATTCTAGTCATGAAATGGTTCACCTCCAAAATCCCATGT

Coding sequence (CDS)

TGCTGCTGTGAGAAATGTAACTGCAGGCCTCTCGGTTTTCTTCTCGGCCTGCCGTTCGCCTTCCTTGCCCTCTTCATTGGCTTCATCGGAGCTATTATTTGGATTTTTGGATCGGTGCTGACTTGCATATGTCCTTGCTGCTTGTGTGTGACTGTGGTGGTAGAGTTTGCATTGGCTTTGATCAACGCTCCAATTCTAGTCATGAAATGGTTCACCTCCAAAATCCCATGT

Protein sequence

CCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALALINAPILVMKWFTSKIPC

Homology

[Close]

BLAST of MS013572.1 vs. NCBI nr
Match: XP_022139803.1 (uncharacterized protein LOC111010630 [Momordica charantia])

HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  CCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALAL 60
          CCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALAL
Sbjct: 4  CCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALAL 63

Query: 61 INAPILVMKWFTSKIPC 78
          INAPILVMKWFTSKIPC
Sbjct: 64 INAPILVMKWFTSKIPC 80

[Close]

BLAST of MS013572.1 vs. NCBI nr
Match: XP_022955033.1 (uncharacterized protein LOC111457111 [Cucurbita moschata] >XP_023541227.1 uncharacterized protein LOC111801456 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 149.8 bits (377), Expect = 9.4e-33
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  CCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALAL 60
          CCCE CNCRPLGFLLGLPFAFLALF+GF+G IIWIFGSVL+CICPCCLCVTV VEFALAL
Sbjct: 4  CCCEDCNCRPLGFLLGLPFAFLALFVGFVGIIIWIFGSVLSCICPCCLCVTVAVEFALAL 63

Query: 61 INAPILVMKWFTSKIPC 78
          IN PILVMKWFTSKIPC
Sbjct: 64 INVPILVMKWFTSKIPC 80

[Close]

BLAST of MS013572.1 vs. NCBI nr
Match: XP_008443051.1 (PREDICTED: uncharacterized protein LOC103486760 [Cucumis melo])

HSP 1 Score: 144.8 bits (364), Expect = 3.0e-31
Identity = 66/77 (85.71%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  CCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALAL 60
          CC EKCNCRPLGFLLGLPFAFL++F+GF+G +IWI GSVL+CICPCC CVTVV+EFALAL
Sbjct: 4  CCSEKCNCRPLGFLLGLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFALAL 63

Query: 61 INAPILVMKWFTSKIPC 78
          INAPILVMKWFTSKIPC
Sbjct: 64 INAPILVMKWFTSKIPC 80

[Close]

BLAST of MS013572.1 vs. NCBI nr
Match: XP_004149050.1 (signaling peptide TAXIMIN 1 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 1.5e-30
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  CCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALAL 60
          CC EKCNCRPLGFLL LPFAFL++F+GF+G +IWI GSVL+CICPCC CVTVV+EFALAL
Sbjct: 4  CCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFALAL 63

Query: 61 INAPILVMKWFTSKIPC 78
          INAPILVMKWFTSKIPC
Sbjct: 64 INAPILVMKWFTSKIPC 80

[Close]

BLAST of MS013572.1 vs. NCBI nr
Match: XP_017978472.1 (PREDICTED: uncharacterized protein LOC18596727 [Theobroma cacao])

HSP 1 Score: 133.3 bits (334), Expect = 9.1e-28
Identity = 61/77 (79.22%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1  CCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALAL 60
          CCC+ C CRPLGFLLGLPFAFL+L I  +G +IWI G VLTCICPCCLCVT++VEFAL L
Sbjct: 5  CCCDDCECRPLGFLLGLPFAFLSLLISIVGIVIWIVGLVLTCICPCCLCVTIIVEFALGL 64

Query: 61 INAPILVMKWFTSKIPC 78
          I APILVMKWFTSKIPC
Sbjct: 65 IKAPILVMKWFTSKIPC 81

[Close]

BLAST of MS013572.1 vs. ExPASy Swiss-Prot
Match: O82275 (Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 3.2e-23
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 7  NCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALALINAPIL 66
          +CRPLGFLLGLPFAFL+L +  IG IIWI G +L+CICPCCLCVTV+VE A+ LI API 
Sbjct: 5  DCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPIH 64

Query: 67 VMKWFTSKIPC 78
          VM+WF SKIPC
Sbjct: 65 VMEWFMSKIPC 75

[Close]

BLAST of MS013572.1 vs. ExPASy Swiss-Prot
Match: Q1G309 (Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 4.7e-19
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 7  NCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALALINAPIL 66
          +CRPLGFL+GLPFA +AL +  +GA+IWI G+VL+C+CPCC C   +  FA+ LI  PI 
Sbjct: 3  DCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLPIK 62

Query: 67 VMKWFTSKIPC 78
          V++WFT  IPC
Sbjct: 63 VLRWFTHSIPC 73

[Close]

BLAST of MS013572.1 vs. ExPASy TrEMBL
Match: A0A6J1CGK2 (uncharacterized protein LOC111010630 OS=Momordica charantia OX=3673 GN=LOC111010630 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.8e-36
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  CCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALAL 60
          CCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALAL
Sbjct: 4  CCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALAL 63

Query: 61 INAPILVMKWFTSKIPC 78
          INAPILVMKWFTSKIPC
Sbjct: 64 INAPILVMKWFTSKIPC 80

[Close]

BLAST of MS013572.1 vs. ExPASy TrEMBL
Match: A0A6J1GSU1 (uncharacterized protein LOC111457111 OS=Cucurbita moschata OX=3662 GN=LOC111457111 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 4.6e-33
Identity = 70/77 (90.91%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  CCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALAL 60
          CCCE CNCRPLGFLLGLPFAFLALF+GF+G IIWIFGSVL+CICPCCLCVTV VEFALAL
Sbjct: 4  CCCEDCNCRPLGFLLGLPFAFLALFVGFVGIIIWIFGSVLSCICPCCLCVTVAVEFALAL 63

Query: 61 INAPILVMKWFTSKIPC 78
          IN PILVMKWFTSKIPC
Sbjct: 64 INVPILVMKWFTSKIPC 80

[Close]

BLAST of MS013572.1 vs. ExPASy TrEMBL
Match: A0A1S3B6N4 (uncharacterized protein LOC103486760 OS=Cucumis melo OX=3656 GN=LOC103486760 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.5e-31
Identity = 66/77 (85.71%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  CCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALAL 60
          CC EKCNCRPLGFLLGLPFAFL++F+GF+G +IWI GSVL+CICPCC CVTVV+EFALAL
Sbjct: 4  CCSEKCNCRPLGFLLGLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFALAL 63

Query: 61 INAPILVMKWFTSKIPC 78
          INAPILVMKWFTSKIPC
Sbjct: 64 INAPILVMKWFTSKIPC 80

[Close]

BLAST of MS013572.1 vs. ExPASy TrEMBL
Match: A0A0A0LV60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G478070 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.3e-31
Identity = 65/77 (84.42%), Postives = 72/77 (93.51%), Query Frame = 0


Query: 1  CCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALAL 60
          CC EKCNCRPLGFLL LPFAFL++F+GF+G +IWI GSVL+CICPCC CVTVV+EFALAL
Sbjct: 4  CCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFALAL 63

Query: 61 INAPILVMKWFTSKIPC 78
          INAPILVMKWFTSKIPC
Sbjct: 64 INAPILVMKWFTSKIPC 80

[Close]

BLAST of MS013572.1 vs. ExPASy TrEMBL
Match: A0A6J1B6Y1 (uncharacterized protein LOC110424677 OS=Herrania umbratica OX=108875 GN=LOC110424677 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 60/77 (77.92%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1  CCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALAL 60
          CCC+ C CRPLGFLLGLPFAFL+L I  +G +IWI G VLTCICPCCLCVT++VEFAL L
Sbjct: 6  CCCDDCECRPLGFLLGLPFAFLSLLISIVGIVIWIVGLVLTCICPCCLCVTIIVEFALGL 65

Query: 61 INAPILVMKWFTSKIPC 78
          I AP LVMKWFTSKIPC
Sbjct: 66 IKAPTLVMKWFTSKIPC 82

[Close]

BLAST of MS013572.1 vs. TAIR 10
Match: AT2G31090.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20562.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 108.6 bits (270), Expect = 2.2e-24
Identity = 52/71 (73.24%), Postives = 60/71 (84.51%), Query Frame = 0


Query: 7  NCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALALINAPIL 66
          +CRPLGFLLGLPFAFL+L +  IG IIWI G +L+CICPCCLCVTV+VE A+ LI API 
Sbjct: 5  DCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAPIH 64

Query: 67 VMKWFTSKIPC 78
          VM+WF SKIPC
Sbjct: 65 VMEWFMSKIPC 75

[Close]

BLAST of MS013572.1 vs. TAIR 10
Match: AT2G20562.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 94.7 bits (234), Expect = 3.4e-20
Identity = 41/71 (57.75%), Postives = 54/71 (76.06%), Query Frame = 0


Query: 7  NCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFALALINAPIL 66
          +CRPLGFL+GLPFA +AL +  +GA+IWI G+VL+C+CPCC C   +  FA+ LI  PI 
Sbjct: 3  DCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLPIK 62

Query: 67 VMKWFTSKIPC 78
          V++WFT  IPC
Sbjct: 63 VLRWFTHSIPC 73

The following BLAST results are available for this feature:

BLAST of MS013572.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139803.1	1.2e-35	100.00	uncharacterized protein LOC111010630 [Momordica charantia]	[more]
XP_022955033.1	9.4e-33	90.91	uncharacterized protein LOC111457111 [Cucurbita moschata] >XP_023541227.1 unchar...	[more]
XP_008443051.1	3.0e-31	85.71	PREDICTED: uncharacterized protein LOC103486760 [Cucumis melo]	[more]
XP_004149050.1	1.5e-30	84.42	signaling peptide TAXIMIN 1 [Cucumis sativus]	[more]
XP_017978472.1	9.1e-28	79.22	PREDICTED: uncharacterized protein LOC18596727 [Theobroma cacao]	[more]

BLAST of MS013572.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82275	3.2e-23	73.24	Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2	[more]
Q1G309	4.7e-19	57.75	Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1	[more]

BLAST of MS013572.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CGK2	5.8e-36	100.00	uncharacterized protein LOC111010630 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1GSU1	4.6e-33	90.91	uncharacterized protein LOC111457111 OS=Cucurbita moschata OX=3662 GN=LOC1114571...	[more]
A0A1S3B6N4	1.5e-31	85.71	uncharacterized protein LOC103486760 OS=Cucumis melo OX=3656 GN=LOC103486760 PE=...	[more]
A0A0A0LV60	7.3e-31	84.42	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G478070 PE=4 SV=1	[more]
A0A6J1B6Y1	1.7e-27	77.92	uncharacterized protein LOC110424677 OS=Herrania umbratica OX=108875 GN=LOC11042...	[more]

BLAST of MS013572.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31090.1	2.2e-24	73.24	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G20562.1	3.4e-20	57.75	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33834:SF9	PROTEIN, PUTATIVE-RELATED	coord: 1..77
None	No IPR available	PANTHER	PTHR33834	SIGNALING PEPTIDE TAXIMIN 2	coord: 1..77

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS013572	MS013572	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS013572.1-cds	MS013572.1-cds-scaffold402:2526355..2526475	CDS
MS013572.1-cds	MS013572.1-cds-scaffold402:2526586..2526695	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS013572.1	MS013572.1-protein	polypeptide