MS013526.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS013526.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	MADS-box transcription factor
Location	scaffold402: 2201661 .. 2204857 (-)
Sequence length	555
RNA-Seq Expression	MS013526.1
Synteny	MS013526.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTACCCAGATGAGAGGCAGGTGGAGCAGCAGCGAAGAAGTGGGCGAGGGAAGATCGAAATAAAGAGAATAGAGAACACAACGAATCGGCAAGTAACTTTCTGTAAGCGGCGAAATGGGCTGCTCAAGAAGGCTTATGAGCTCTCTGTTCTGTGTGATGCTGAGGTTGCTCTTGTGGTCTTCTCCAGCCGTGGTCGCCTCTATGAATATGCCAATAACAGGTGCTTTCTTTTTTCTTTTTTCTCTTTTTGTTTTGAATTTTTGTTGGGTTTCTTGAAATGGATCTTGATTGTTCAAAGATTAGGGTTTGATGATCGTGTTATTTGGGGTTATGGGTTGATGGGTTGATGGGTTGATGGGTTGATGGGTTTTGGGGATCTGGTGTGAATAATTGGATTGAGTTTTTAAGGATTTTTGAGGATTTAGAAGAGAAATAACTAATTAAGGAGAAGGAGATATCATGAATTTTCTTTTCTTTGTATATTTATTTGATTTTTTTTAAAAAAAGAGGGTGTTTATTTGATAACAATTAAGGAGATGTAGATTTGTGTAATATGAGAGATTTAACAAGTTGAATTTGTTTAATACATGTGAATTTCATGACGTATCATAATCAAGTTAAGAAATTAAGGGCTCGTTTGCTAACTTTCTTATTTCCAATTTTCTTAACAAGTCTAAGCATTTTGCAATTAAGTTTAAGTATAAAAATTTTGGAAATAACCAAAACAAAAATTATTCCTTCTAATTCTCATTTTCGATTTGTTCCAAAACATAAAAAAAATATATATATATTTTATCTATTTGAATTCAGGGATGTTAAGGCCATGAAATTCATTATTCTTTATTAAAAACTAAAAAAACAGAACAAGAAACAGAAAACATTACGAAACTAGCCTTGAATATCTCTAAACCAATTTTTTTTTTAATATTACAAACTAAGCATAGGATTATAAAAAGTGAGCCTCTGATTAACAATCATTTTGTTTTTATTTTTAAAAATGATACTTGTTTCCTCACAATTTCTTTAACGTAGGAAGAACTACCTTCGTTTAGTTTTCAAAACTCGATCTAATCAAATATGTGTTAAAAAAGAAAATAACAAAACAAAGAAACAAATATAAGTGAAAATAGTGTTTATAAAAAGAAAATGGTTATCAAACGGTTTGATTATGAATTGTGTAGGTTATTCGGGAGCTAAACTTACTCAAAATTGGTTCTGTGTTATTATTTCTCTCATTTTGATAGCCCCATCCATGAAGCCTATTCTCACATCCCACAGATCCCAATCTACTAGACATAGACAATTCATTGCAGTGTACAATTTACAAAGTTTTTTTTTTTTTTTGGGTACAGAAAAGATGGGATTTTTAGGGTTAGTTTTTGTAGTAAGTTTAAAAGAGAGAGGCCTTAAATAAACCATATTTGAACAAATGTGCAGAGAGTCAGCCAAAAAGAAAGAGAAATTTTTAGGGTTTGTATTCCTCATTTAATTTGTTATGTGGGTGTTTGAAACTTTTGAAGTGGTCTTCTCTTCTTCAACATATATCAGAGAATCTTTGATTACGTCAGAAGAAGGGATTCTTTTTTTCTGCTCTCAAGAAAATGAGCTTCATTTTTGTCCTCATTTCCTTATCTGCCTCTTCCTTTTTATTCCCTCTCCAACCCTCTTCTTTATCTTCTTTTGGCCTCGCTGAATTTACCCGTTTAGCTATGTTCGGTTTGACTTTTTCCATCTAAATTACCCCGAGTATAGCTCAATAGAGATGACATTAATTACTTTGGTTGAACCTAAACTAATTTCTAAAAAAATCTACTCTACCAACTACTTGGATCAAAATTTATTCAGCATTCATTTAGCTCATCAAATAGAATCCGAACAAGAAAAAACACCTATACCATTTGTTTGGTTTTCGGTGAGCCCGAAAGTGTCCAAATCAAAATACAACTTTTAAATTAAGTTACGAATTAGTCGATTCAGCCCAGCCTTAGAAACTTAACCTGTTACCAAAGGCAGTGAAGAAATTAAAGCACTAGAAAATAGCAAAAAAAAAAAAAAAAAGACCCAAACGTGTCAGATATTAGCCCTAATTCAGCTCTAGTCTGCCATTTCTATAATTGTGAAAATATACAGAGCCCTGATGTATCCTCAATTTTCATGGATTTTCACCTGCCATTATTTCTTTTGAAATTCCCAAGGTTGTGATTTTAATTTTATGTTCTCGACACCTGGCCAAAGCCTGGCCGTAGGTCTCTCTTATCCAATCTCGACGAAATTAAGGAATCCCAGACCCACCTTTGCATTCACTGAAGAAACAAATGGATGTGACTTCCCCTTTTCCTTTCAAATCATCACCACATTTCTTCATTTTTGTTTTTGTTTTTCAGATTCAAACCTTTTTCATGCTTTTGAATTTGATTCTGATGGGAGGAGTAAAAATTGTGCATTTTAAGCGGTTTAGGAATAATCCAGGAAATCGAAGCAGATTTAGGTATAAAATTTTAAAATTATAGAGACGGTTGGTTGCAGTGTTCGGGCGACGATTTCGAGGTACAAAAAGGCATGTTCGGATCCTTCCAGCGCCGGATCCGTTTCTGAAGCCAATGCTCAGGTGAGCTCTCCATATCAAATTAGGGTTTTCTTTTTCTGATTCTTAATTAAATCGTAACTTCCCGATGGATCTTTAATTGTCTCACAGTTCTACCAGCAAGAATCCGCCAAATTGCGATCTCAGATAGGGAATTTGCAAAACCTAAACAGGTAATAAATGAATAAACTCCATTAATGTTCTGCTTCGATCCTCGATTTTTCATTAATGTGATGGATTGGAAGGCATTTGCTGGGGGATTCCATAAGTTCGTTGTCGGTGAAAGATCTGAAAAGCCTGGAGGTCAAATTGGAGAAAGGAATTAGCCGAATTCGATCCAGAAAGGTAAAATTTAATTAATCCACCCCAATTCGATCTTGATAAATTTCTCATAATTTTGTTTCTTCTCTCTTTGTGCGCAGAACGAGCTTCTGTTTGCGGAGATTGAGTACATGCAGAAAAGGGTACACAGATTTCTTTTGATTATTGAACTCGTAATTTACCTTCAATCGATTTGGTGCATGTAATTTAGTTTGTGATAAAGTTTAAAATTAATGAATACAGGAAGTTGAGCTGCACAATAATAATCAGCTGCTGCGAGCAAAGGTC

mRNA sequence

ATGGCGTACCCAGATGAGAGGCAGGTGGAGCAGCAGCGAAGAAGTGGGCGAGGGAAGATCGAAATAAAGAGAATAGAGAACACAACGAATCGGCAAGTAACTTTCTGTAAGCGGCGAAATGGGCTGCTCAAGAAGGCTTATGAGCTCTCTGTTCTGTGTGATGCTGAGGTTGCTCTTGTGGTCTTCTCCAGCCGTGGTCGCCTCTATGAATATGCCAATAACAGTGTTCGGGCGACGATTTCGAGGTACAAAAAGGCATGTTCGGATCCTTCCAGCGCCGGATCCGTTTCTGAAGCCAATGCTCAGTTCTACCAGCAAGAATCCGCCAAATTGCGATCTCAGATAGGGAATTTGCAAAACCTAAACAGGCATTTGCTGGGGGATTCCATAAGTTCGTTGTCGGTGAAAGATCTGAAAAGCCTGGAGGTCAAATTGGAGAAAGGAATTAGCCGAATTCGATCCAGAAAGAACGAGCTTCTGTTTGCGGAGATTGAGTACATGCAGAAAAGGGAAGTTGAGCTGCACAATAATAATCAGCTGCTGCGAGCAAAGGTC

Coding sequence (CDS)

ATGGCGTACCCAGATGAGAGGCAGGTGGAGCAGCAGCGAAGAAGTGGGCGAGGGAAGATCGAAATAAAGAGAATAGAGAACACAACGAATCGGCAAGTAACTTTCTGTAAGCGGCGAAATGGGCTGCTCAAGAAGGCTTATGAGCTCTCTGTTCTGTGTGATGCTGAGGTTGCTCTTGTGGTCTTCTCCAGCCGTGGTCGCCTCTATGAATATGCCAATAACAGTGTTCGGGCGACGATTTCGAGGTACAAAAAGGCATGTTCGGATCCTTCCAGCGCCGGATCCGTTTCTGAAGCCAATGCTCAGTTCTACCAGCAAGAATCCGCCAAATTGCGATCTCAGATAGGGAATTTGCAAAACCTAAACAGGCATTTGCTGGGGGATTCCATAAGTTCGTTGTCGGTGAAAGATCTGAAAAGCCTGGAGGTCAAATTGGAGAAAGGAATTAGCCGAATTCGATCCAGAAAGAACGAGCTTCTGTTTGCGGAGATTGAGTACATGCAGAAAAGGGAAGTTGAGCTGCACAATAATAATCAGCTGCTGCGAGCAAAGGTC

Protein sequence

MAYPDERQVEQQRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQNLNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNNQLLRAKV

Homology

[Close]

BLAST of MS013526.1 vs. NCBI nr
Match: XP_022139885.1 (floral homeotic protein AGAMOUS-like [Momordica charantia])

HSP 1 Score: 346.3 bits (887), Expect = 1.7e-91
Identity = 184/185 (99.46%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MAYPDERQVEQQRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALV 60
           MAYPDERQVEQQRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALV
Sbjct: 1   MAYPDERQVEQQRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALV 60

Query: 61  VFSSRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQN 120
           VFSSRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQN
Sbjct: 61  VFSSRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQN 120

Query: 121 LNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNNQL 180
           LNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNNQL
Sbjct: 121 LNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNNQL 180

Query: 181 LRAKV 186
           LRAK+
Sbjct: 181 LRAKI 185

[Close]

BLAST of MS013526.1 vs. NCBI nr
Match: KAG7019550.1 (Floral homeotic protein AGAMOUS, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 310.8 bits (795), Expect = 7.7e-81
Identity = 165/197 (83.76%), Postives = 178/197 (90.36%), Query Frame = 0


Query: 1   MAYPDERQVEQQ------------RRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYE 60
           M YPDE Q ++Q            RRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYE
Sbjct: 1   MGYPDEMQKQKQKQKQAGEEQSQPRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYE 60

Query: 61  LSVLCDAEVALVVFSSRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQES 120
           LSVLCDAEVAL+VFS+RGRLYEYANNSVRATISRYKKACSDP SAGSVSEAN QFY+QES
Sbjct: 61  LSVLCDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPLSAGSVSEANTQFYEQES 120

Query: 121 AKLRSQIGNLQNLNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQ 180
           AKLR+QIGN+QNLNRHLLG+SISSLSVKDLKSL+VKLEKGISRIRSRKNE+LFAEIEYM 
Sbjct: 121 AKLRAQIGNMQNLNRHLLGESISSLSVKDLKSLQVKLEKGISRIRSRKNEVLFAEIEYMH 180

Query: 181 KREVELHNNNQLLRAKV 186
           KRE+ELHN NQL+RAK+
Sbjct: 181 KREIELHNTNQLIRAKI 197

[Close]

BLAST of MS013526.1 vs. NCBI nr
Match: XP_023548151.1 (floral homeotic protein AGAMOUS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.8 bits (795), Expect = 7.7e-81
Identity = 164/193 (84.97%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1   MAYPDERQVE--------QQRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVL 60
           M YPDE Q +        Q+RRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVL
Sbjct: 1   MGYPDEMQKQKQAGEEQSQRRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVL 60

Query: 61  CDAEVALVVFSSRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLR 120
           CDAEVAL+VFS+RGRLYEYANNSVRATISRYKKACSDP SAGSVSEAN QFY+QESAKLR
Sbjct: 61  CDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPLSAGSVSEANTQFYEQESAKLR 120

Query: 121 SQIGNLQNLNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREV 180
           +QIGN+QNLNRHLLG+SI SLSVKDLKSL+VKLEKGI+RIRSRKNELLFAEIEYM KRE+
Sbjct: 121 AQIGNMQNLNRHLLGESIGSLSVKDLKSLQVKLEKGITRIRSRKNELLFAEIEYMHKREI 180

Query: 181 ELHNNNQLLRAKV 186
           ELHN NQL+RAK+
Sbjct: 181 ELHNTNQLIRAKI 193

[Close]

BLAST of MS013526.1 vs. NCBI nr
Match: XP_022927465.1 (floral homeotic protein AGAMOUS-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 310.8 bits (795), Expect = 7.7e-81
Identity = 165/197 (83.76%), Postives = 178/197 (90.36%), Query Frame = 0


Query: 1   MAYPDERQVEQQ------------RRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYE 60
           M YPDE Q ++Q            RRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYE
Sbjct: 1   MGYPDEMQKQKQKQKQAGEEQSQPRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYE 60

Query: 61  LSVLCDAEVALVVFSSRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQES 120
           LSVLCDAEVAL+VFS+RGRLYEYANNSVRATISRYKKACSDP SAGSVSEAN QFY+QES
Sbjct: 61  LSVLCDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPLSAGSVSEANTQFYEQES 120

Query: 121 AKLRSQIGNLQNLNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQ 180
           AKLR+QIGN+QNLNRHLLG+SISSLSVKDLKSL+VKLEKGISRIRSRKNE+LFAEIEYM 
Sbjct: 121 AKLRAQIGNMQNLNRHLLGESISSLSVKDLKSLQVKLEKGISRIRSRKNEVLFAEIEYMH 180

Query: 181 KREVELHNNNQLLRAKV 186
           KRE+ELHN NQL+RAK+
Sbjct: 181 KREIELHNTNQLIRAKI 197

[Close]

BLAST of MS013526.1 vs. NCBI nr
Match: XP_022927464.1 (floral homeotic protein AGAMOUS-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 310.8 bits (795), Expect = 7.7e-81
Identity = 165/197 (83.76%), Postives = 178/197 (90.36%), Query Frame = 0


Query: 1   MAYPDERQVEQQ------------RRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYE 60
           M YPDE Q ++Q            RRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYE
Sbjct: 1   MGYPDEMQKQKQKQKQAGEEQSQPRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYE 60

Query: 61  LSVLCDAEVALVVFSSRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQES 120
           LSVLCDAEVAL+VFS+RGRLYEYANNSVRATISRYKKACSDP SAGSVSEAN QFY+QES
Sbjct: 61  LSVLCDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPLSAGSVSEANTQFYEQES 120

Query: 121 AKLRSQIGNLQNLNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQ 180
           AKLR+QIGN+QNLNRHLLG+SISSLSVKDLKSL+VKLEKGISRIRSRKNE+LFAEIEYM 
Sbjct: 121 AKLRAQIGNMQNLNRHLLGESISSLSVKDLKSLQVKLEKGISRIRSRKNEVLFAEIEYMH 180

Query: 181 KREVELHNNNQLLRAKV 186
           KRE+ELHN NQL+RAK+
Sbjct: 181 KREIELHNTNQLIRAKI 197

[Close]

BLAST of MS013526.1 vs. ExPASy Swiss-Prot
Match: Q43585 (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum OX=4097 GN=AG1 PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.6e-76
Identity = 144/179 (80.45%), Postives = 170/179 (94.97%), Query Frame = 0


Query: 7   RQVEQQRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRG 66
           R++  QR+ GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFSSRG
Sbjct: 9   REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 68

Query: 67  RLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQNLNRHLL 126
           RLYEYANNSV+ATI RYKKACSD S+ GS+SEANAQ+YQQE++KLR+QIGNLQN NR++L
Sbjct: 69  RLYEYANNSVKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNML 128

Query: 127 GDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNNQLLRAKV 186
           G+S+++LS++DLK+LE K+EKGIS+IRS+KNELLFAEIEYMQKRE++LHNNNQ LRAK+
Sbjct: 129 GESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKI 187

[Close]

BLAST of MS013526.1 vs. ExPASy Swiss-Prot
Match: Q40885 (Floral homeotic protein AGAMOUS OS=Petunia hybrida OX=4102 GN=AG1 PE=1 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 6.6e-75
Identity = 140/179 (78.21%), Postives = 169/179 (94.41%), Query Frame = 0


Query: 7   RQVEQQRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRG 66
           R++  QR+ GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFSSRG
Sbjct: 9   REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 68

Query: 67  RLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQNLNRHLL 126
           RLYEYANNSV+ATI RYKKACSD S+ GS++EANAQ+YQQE++KLR+QIGNLQN NR+ L
Sbjct: 69  RLYEYANNSVKATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFL 128

Query: 127 GDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNNQLLRAKV 186
           G+S+++L+++DL++LE K+EKGIS+IR++KNELLFAEIEYMQKRE++LHNNNQ LRAK+
Sbjct: 129 GESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKI 187

[Close]

BLAST of MS013526.1 vs. ExPASy Swiss-Prot
Match: Q40168 (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum OX=4081 GN=AG1 PE=2 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 4.2e-74
Identity = 140/179 (78.21%), Postives = 167/179 (93.30%), Query Frame = 0


Query: 7   RQVEQQRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRG 66
           R++  QR+ GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFS+RG
Sbjct: 9   REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRG 68

Query: 67  RLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQNLNRHLL 126
           RLYEYANNSV+ATI RYKKACSD S+ GSVSEANAQ+YQQE++KLR+QIGNL N NR+++
Sbjct: 69  RLYEYANNSVKATIERYKKACSDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMM 128

Query: 127 GDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNNQLLRAKV 186
           G++++ + +K+LK+LE ++EKGIS+IRS+KNELLFAEIEYMQKREV+LHNNNQ LRAK+
Sbjct: 129 GEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKI 187

[Close]

BLAST of MS013526.1 vs. ExPASy Swiss-Prot
Match: Q93XH4 (Agamous-like MADS-box protein MADS1 OS=Vitis vinifera OX=29760 GN=MADS1 PE=2 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 4.0e-72
Identity = 139/170 (81.76%), Postives = 158/170 (92.94%), Query Frame = 0


Query: 16  GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNS 75
           GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFSSRGRLYEYANNS
Sbjct: 2   GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS 61

Query: 76  VRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQNLNRHLLGDSISSLSV 135
           VR TI RYKK CSD S+ GSVSEANAQFYQQE++KLR QI ++QNLNRH+LG+++SSL+ 
Sbjct: 62  VRTTIERYKKVCSDSSNTGSVSEANAQFYQQEASKLRRQIRDIQNLNRHILGEALSSLNF 121

Query: 136 KDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNNQLLRAKV 186
           K+LK+LE +LEKGISRIRS+KNELLFAEIEYMQKRE+EL N+N  LRA++
Sbjct: 122 KELKNLETRLEKGISRIRSKKNELLFAEIEYMQKREIELQNSNLFLRAQI 171

[Close]

BLAST of MS013526.1 vs. ExPASy Swiss-Prot
Match: Q40872 (Floral homeotic protein AGAMOUS OS=Panax ginseng OX=4054 GN=AG2 PE=2 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.0e-71
Identity = 138/187 (73.80%), Postives = 166/187 (88.77%), Query Frame = 0


Query: 1   MAYPDER--QVEQQRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVA 60
           M++ D++   +  QR+ GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVA
Sbjct: 1   MSFYDDQSGNLSPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVA 60

Query: 61  LVVFSSRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNL 120
           L+VFS+RGRLYEYANNSV+ TI RYKKAC+D  +  SVSEANAQFYQQE++KLR +I ++
Sbjct: 61  LIVFSTRGRLYEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSI 120

Query: 121 QNLNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNN 180
           Q  NR+++G+S+ SL+V+DLK LE KLEKGISRIRS+KNELLFAEIEYMQK+E++LHNNN
Sbjct: 121 QKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNN 180

Query: 181 QLLRAKV 186
           Q LRAK+
Sbjct: 181 QYLRAKI 187

[Close]

BLAST of MS013526.1 vs. ExPASy TrEMBL
Match: A0A6J1CDJ2 (floral homeotic protein AGAMOUS-like OS=Momordica charantia OX=3673 GN=LOC111010689 PE=4 SV=1)

HSP 1 Score: 346.3 bits (887), Expect = 8.0e-92
Identity = 184/185 (99.46%), Postives = 185/185 (100.00%), Query Frame = 0


Query: 1   MAYPDERQVEQQRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALV 60
           MAYPDERQVEQQRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALV
Sbjct: 1   MAYPDERQVEQQRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALV 60

Query: 61  VFSSRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQN 120
           VFSSRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQN
Sbjct: 61  VFSSRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQN 120

Query: 121 LNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNNQL 180
           LNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNNQL
Sbjct: 121 LNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNNQL 180

Query: 181 LRAKV 186
           LRAK+
Sbjct: 181 LRAKI 185

[Close]

BLAST of MS013526.1 vs. ExPASy TrEMBL
Match: A0A6J1EP10 (floral homeotic protein AGAMOUS-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434283 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.7e-81
Identity = 165/197 (83.76%), Postives = 178/197 (90.36%), Query Frame = 0


Query: 1   MAYPDERQVEQQ------------RRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYE 60
           M YPDE Q ++Q            RRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYE
Sbjct: 1   MGYPDEMQKQKQKQKQAGEEQSQPRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYE 60

Query: 61  LSVLCDAEVALVVFSSRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQES 120
           LSVLCDAEVAL+VFS+RGRLYEYANNSVRATISRYKKACSDP SAGSVSEAN QFY+QES
Sbjct: 61  LSVLCDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPLSAGSVSEANTQFYEQES 120

Query: 121 AKLRSQIGNLQNLNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQ 180
           AKLR+QIGN+QNLNRHLLG+SISSLSVKDLKSL+VKLEKGISRIRSRKNE+LFAEIEYM 
Sbjct: 121 AKLRAQIGNMQNLNRHLLGESISSLSVKDLKSLQVKLEKGISRIRSRKNEVLFAEIEYMH 180

Query: 181 KREVELHNNNQLLRAKV 186
           KRE+ELHN NQL+RAK+
Sbjct: 181 KREIELHNTNQLIRAKI 197

[Close]

BLAST of MS013526.1 vs. ExPASy TrEMBL
Match: A0A6J1EI26 (floral homeotic protein AGAMOUS-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111434283 PE=4 SV=1)

HSP 1 Score: 310.8 bits (795), Expect = 3.7e-81
Identity = 165/197 (83.76%), Postives = 178/197 (90.36%), Query Frame = 0


Query: 1   MAYPDERQVEQQ------------RRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYE 60
           M YPDE Q ++Q            RRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYE
Sbjct: 1   MGYPDEMQKQKQKQKQAGEEQSQPRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYE 60

Query: 61  LSVLCDAEVALVVFSSRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQES 120
           LSVLCDAEVAL+VFS+RGRLYEYANNSVRATISRYKKACSDP SAGSVSEAN QFY+QES
Sbjct: 61  LSVLCDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPLSAGSVSEANTQFYEQES 120

Query: 121 AKLRSQIGNLQNLNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQ 180
           AKLR+QIGN+QNLNRHLLG+SISSLSVKDLKSL+VKLEKGISRIRSRKNE+LFAEIEYM 
Sbjct: 121 AKLRAQIGNMQNLNRHLLGESISSLSVKDLKSLQVKLEKGISRIRSRKNEVLFAEIEYMH 180

Query: 181 KREVELHNNNQLLRAKV 186
           KRE+ELHN NQL+RAK+
Sbjct: 181 KREIELHNTNQLIRAKI 197

[Close]

BLAST of MS013526.1 vs. ExPASy TrEMBL
Match: A0A6J1KMT2 (floral homeotic protein AGAMOUS-like OS=Cucurbita maxima OX=3661 GN=LOC111495587 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.4e-80
Identity = 163/195 (83.59%), Postives = 178/195 (91.28%), Query Frame = 0


Query: 1   MAYPDERQVEQQ----------RRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS 60
           M YPDE Q ++Q          RRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS
Sbjct: 1   MGYPDEMQKQKQKQAGEEQSQPRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELS 60

Query: 61  VLCDAEVALVVFSSRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAK 120
           VLCDAEVAL+VFS+RGRLYEYANNSVRATISRYKKACSDP SAGSVSEAN QFY+QESAK
Sbjct: 61  VLCDAEVALIVFSTRGRLYEYANNSVRATISRYKKACSDPYSAGSVSEANTQFYEQESAK 120

Query: 121 LRSQIGNLQNLNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKR 180
           LR++IGN+QNLNRHLLG+SISSLSVKDLKSL+VKLEKGISRIRSRKNE+LFAEIEYM KR
Sbjct: 121 LRAEIGNMQNLNRHLLGESISSLSVKDLKSLQVKLEKGISRIRSRKNEVLFAEIEYMHKR 180

Query: 181 EVELHNNNQLLRAKV 186
           E+EL+N NQL+RAK+
Sbjct: 181 EIELYNTNQLIRAKI 195

[Close]

BLAST of MS013526.1 vs. ExPASy TrEMBL
Match: A0A1S3B8P7 (floral homeotic protein AGAMOUS-like OS=Cucumis melo OX=3656 GN=LOC103487219 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.9e-78
Identity = 159/179 (88.83%), Postives = 170/179 (94.97%), Query Frame = 0


Query: 7   RQVEQQRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRG 66
           R+     R+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFSSRG
Sbjct: 17  RKSSSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRG 76

Query: 67  RLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQNLNRHLL 126
           RLYEYANNSVRATISRYKKA SDPS+A SVSEAN QFYQQESAKLR+QIGNLQNLNRHLL
Sbjct: 77  RLYEYANNSVRATISRYKKAYSDPSTAMSVSEANTQFYQQESAKLRAQIGNLQNLNRHLL 136

Query: 127 GDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNNQLLRAKV 186
           G+SISSLSVKDLKSLEVKLEKG+SRIRSRKNELLF+EIEYMQKRE+ELH NNQL+RAK+
Sbjct: 137 GESISSLSVKDLKSLEVKLEKGLSRIRSRKNELLFSEIEYMQKREIELHTNNQLIRAKI 195

[Close]

BLAST of MS013526.1 vs. TAIR 10
Match: AT4G18960.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 260.4 bits (664), Expect = 1.1e-69
Identity = 133/173 (76.88%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 13  RRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYA 72
           R+SGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVAL+VFSSRGRLYEY+
Sbjct: 15  RKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYS 74

Query: 73  NNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQNLNRHLLGDSISS 132
           NNSV+ TI RYKKA SD S+ GSV+E NAQ+YQQESAKLR QI ++QN NR L+G++I S
Sbjct: 75  NNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGS 134

Query: 133 LSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNNQLLRAKV 186
           +S K+L++LE +LE+ I+RIRS+KNELLF+EI+YMQKREV+LHN+NQ+LRAK+
Sbjct: 135 MSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKI 187

[Close]

BLAST of MS013526.1 vs. TAIR 10
Match: AT3G58780.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 257.3 bits (656), Expect = 9.4e-69
Identity = 132/176 (75.00%), Postives = 156/176 (88.64%), Query Frame = 0


Query: 10  EQQRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLY 69
           E  ++ GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALV+FS+RGRLY
Sbjct: 11  ESSKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLY 70

Query: 70  EYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQNLNRHLLGDS 129
           EYANNSVR TI RYKKACSD  +  SV+EAN Q+YQQE++KLR QI ++QN NRH++G+S
Sbjct: 71  EYANNSVRGTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGES 130

Query: 130 ISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNNQLLRAKV 186
           + SL+ K+LK+LE +LEKGISR+RS+KNELL AEIEYMQKRE+EL +NN  LRAK+
Sbjct: 131 LGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKI 186

[Close]

BLAST of MS013526.1 vs. TAIR 10
Match: AT2G42830.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 256.5 bits (654), Expect = 1.6e-68
Identity = 129/176 (73.30%), Postives = 157/176 (89.20%), Query Frame = 0


Query: 10  EQQRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLY 69
           E  ++ GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALV+FS+RGRLY
Sbjct: 11  ESSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLY 70

Query: 70  EYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQNLNRHLLGDS 129
           EYANNSVR TI RYKKACSD  +  +++EAN Q+YQQE++KLR QI ++QNLNRH+LG+S
Sbjct: 71  EYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGES 130

Query: 130 ISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKREVELHNNNQLLRAKV 186
           + SL+ K+LK+LE +LEKGISR+RS+K+E+L AEIEYMQKRE+EL N+N  LR+K+
Sbjct: 131 LGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKI 186

[Close]

BLAST of MS013526.1 vs. TAIR 10
Match: AT2G42830.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 251.5 bits (641), Expect = 5.2e-67
Identity = 129/178 (72.47%), Postives = 157/178 (88.20%), Query Frame = 0


Query: 10  EQQRRSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLY 69
           E  ++ GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALV+FS+RGRLY
Sbjct: 11  ESSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLY 70

Query: 70  EYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQESAKLRSQIGNLQNLNRHLLGDS 129
           EYANNSVR TI RYKKACSD  +  +++EAN Q+YQQE++KLR QI ++QNLNRH+LG+S
Sbjct: 71  EYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGES 130

Query: 130 ISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQKR--EVELHNNNQLLRAKV 186
           + SL+ K+LK+LE +LEKGISR+RS+K+E+L AEIEYMQKR  E+EL N+N  LR+K+
Sbjct: 131 LGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKRVKEIELQNDNMYLRSKI 188

[Close]

BLAST of MS013526.1 vs. TAIR 10
Match: AT4G09960.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 248.4 bits (633), Expect = 4.4e-66
Identity = 134/197 (68.02%), Postives = 158/197 (80.20%), Query Frame = 0


Query: 1   MAYPDERQVEQQR------------RSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYE 60
           M +P ER+ E++R            R GRGKIEIKRIEN+TNRQVTFCKRRNGLLKKAYE
Sbjct: 1   MLFPHERKKEKERSQGFYLVTRLRIRMGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYE 60

Query: 61  LSVLCDAEVALVVFSSRGRLYEYANNSVRATISRYKKACSDPSSAGSVSEANAQFYQQES 120
           LSVLCDAEVAL+VFS+RGRLYEYANN++R+TI RYKKACSD ++  +V E NA +YQQES
Sbjct: 61  LSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQES 120

Query: 121 AKLRSQIGNLQNLNRHLLGDSISSLSVKDLKSLEVKLEKGISRIRSRKNELLFAEIEYMQ 180
           AKLR QI  +QN NR+L+GDS+SSLSVK+LK +E +LEK ISRIRS+K+ELL  EIE  Q
Sbjct: 121 AKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENRLEKAISRIRSKKHELLLVEIENAQ 180

Query: 181 KREVELHNNNQLLRAKV 186
           KRE+EL N N  LR KV
Sbjct: 181 KREIELDNENIYLRTKV 197

The following BLAST results are available for this feature:

BLAST of MS013526.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139885.1	1.7e-91	99.46	floral homeotic protein AGAMOUS-like [Momordica charantia]	[more]
KAG7019550.1	7.7e-81	83.76	Floral homeotic protein AGAMOUS, partial [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_023548151.1	7.7e-81	84.97	floral homeotic protein AGAMOUS-like [Cucurbita pepo subsp. pepo]	[more]
XP_022927465.1	7.7e-81	83.76	floral homeotic protein AGAMOUS-like isoform X2 [Cucurbita moschata]	[more]
XP_022927464.1	7.7e-81	83.76	floral homeotic protein AGAMOUS-like isoform X1 [Cucurbita moschata]	[more]

BLAST of MS013526.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43585	1.6e-76	80.45	Floral homeotic protein AGAMOUS OS=Nicotiana tabacum OX=4097 GN=AG1 PE=2 SV=1	[more]
Q40885	6.6e-75	78.21	Floral homeotic protein AGAMOUS OS=Petunia hybrida OX=4102 GN=AG1 PE=1 SV=1	[more]
Q40168	4.2e-74	78.21	Floral homeotic protein AGAMOUS OS=Solanum lycopersicum OX=4081 GN=AG1 PE=2 SV=1	[more]
Q93XH4	4.0e-72	81.76	Agamous-like MADS-box protein MADS1 OS=Vitis vinifera OX=29760 GN=MADS1 PE=2 SV=...	[more]
Q40872	2.0e-71	73.80	Floral homeotic protein AGAMOUS OS=Panax ginseng OX=4054 GN=AG2 PE=2 SV=1	[more]

BLAST of MS013526.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CDJ2	8.0e-92	99.46	floral homeotic protein AGAMOUS-like OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1EP10	3.7e-81	83.76	floral homeotic protein AGAMOUS-like isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1EI26	3.7e-81	83.76	floral homeotic protein AGAMOUS-like isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KMT2	2.4e-80	83.59	floral homeotic protein AGAMOUS-like OS=Cucurbita maxima OX=3661 GN=LOC111495587...	[more]
A0A1S3B8P7	3.9e-78	88.83	floral homeotic protein AGAMOUS-like OS=Cucumis melo OX=3656 GN=LOC103487219 PE=...	[more]

BLAST of MS013526.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18960.1	1.1e-69	76.88	K-box region and MADS-box transcription factor family protein	[more]
AT3G58780.1	9.4e-69	75.00	K-box region and MADS-box transcription factor family protein	[more]
AT2G42830.1	1.6e-68	73.30	K-box region and MADS-box transcription factor family protein	[more]
AT2G42830.2	5.2e-67	72.47	K-box region and MADS-box transcription factor family protein	[more]
AT4G09960.3	4.4e-66	68.02	K-box region and MADS-box transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 101..121
None	No IPR available	PANTHER	PTHR48019	SERUM RESPONSE FACTOR HOMOLOG	coord: 16..185
None	No IPR available	PANTHER	PTHR48019:SF99	AGAMOUS-LIKE MADS-BOX PROTEIN AGL11	coord: 16..185
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 17..37 score: 72.99 coord: 52..73 score: 62.6 coord: 37..52 score: 86.34
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 15..74 e-value: 4.6E-40 score: 149.1
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 24..71 e-value: 1.1E-26 score: 92.1
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 17..71
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 15..75 score: 33.094692
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 27..94 e-value: 2.8E-28 score: 99.5
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 16..87
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 99..185 e-value: 7.7E-27 score: 93.3
IPR002487	Transcription factor, K-box	PROSITE	PS51297	K_BOX	coord: 101..185 score: 14.562453
IPR033896	MADS MEF2-like	CDD	cd00265	MADS_MEF2_like	coord: 16..89 e-value: 4.15991E-43 score: 136.528

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS013526	MS013526	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS013526.1-cds	MS013526.1-cds-scaffold402:2201661..2201705	CDS
MS013526.1-cds	MS013526.1-cds-scaffold402:2201806..2201847	CDS
MS013526.1-cds	MS013526.1-cds-scaffold402:2201925..2202024	CDS
MS013526.1-cds	MS013526.1-cds-scaffold402:2202097..2202158	CDS
MS013526.1-cds	MS013526.1-cds-scaffold402:2202246..2202327	CDS
MS013526.1-cds	MS013526.1-cds-scaffold402:2204634..2204857	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS013526.1	MS013526.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding