MS013500.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS013500.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Prefoldin subunit 6-like
Location	scaffold402: 2007105 .. 2008010 (-)
Sequence length	453
RNA-Seq Expression	MS013500.1
Synteny	MS013500.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTCTGCAAGCGCTCTTCGAGAACTACAGCGCGAGCTGGAGGCGAAAGCCAACGAGCTCAGCAAGCTACAGAAAGGCAAGCCTCCAATTGATTTTCGCTCCCCCCTGTTCCCACCACTTGCACGATTTATCGAAACTTCAATATTTCAATTAGATTACTGTGTCGAATGTTCTATCTGGATTCTGTACAATCAACTTACTTTCACAAAAACCCTAACAGTTGATGGATGTATCAGATATTGCGAAGAACCACCAAGTGAGGAAGAAATACACTATTCAGCTGGGTGAGAATGAGCTCGTCCTTAAGGTTTTGACACACCTTCACAACTTTTTTTTTTCTCTCGTAGATTAAAGTATATGGTTGTTCGTAGTTCAATAGCGAGGAGGTGAAGGACGATAAGACAATTTTGGTGACCTGGGTATTTCTGTCCGTGCAGAAGTGTTGCAAAGAGCACTATTGATTTTATCGATTTTTTTCCCGTTTCAGTCTAGATTTTCCCGTGTTAAAATTAATTATTGTATTGTAGTAGAATTAAGAGGTCACAGGGGCCGATTGTGTCAAGGGGATGTTTTTCACTTGATATAAAATGTAGCTCAGATTATGAAACTTTTTTTTGTTTAATTTATTTGATTTGGTATACAATGAGAAATTCAAAGCTTTCTTATCAATGTATCTTTTTTTTTTATCAGACAAATTGATTTCTACTAGCTGTGAACATGTTCTTTCTTGCTTGGCTTGTTTGCTTGCATGCGCAGGAATTGGATCTACTGAATGATGATGCAAATGTGTATAAACTGATTGGTCCAGTACTCGTGAAGCAGGATCTGGCAGAAGCAAATGCGAACGTTCGCAAGCGAATAGACTACATCTCTGCTGAATTGTATGTTTTTTCATTTGTTTTT

mRNA sequence

ATGAGTTCTGCAAGCGCTCTTCGAGAACTACAGCGCGAGCTGGAGGCGAAAGCCAACGAGCTCAGCAAGCTACAGAAAGGCAAGCCTCCAATTGATTTTCGCTCCCCTGTTCCCACCACTTGCACGATTTATCGAAACTTCAATATTTCAATTAGATTACTGTGTCGAATGTTCTATCTGGATTCTGTACAATCAACTTACTTTCACAAAAACCCTAACTTGATGGATGTATCAGATATTGCGAAGAACCACCAAGTGAGGAAGAAATACACTATTCAGCTGGGTGAGAATGAGCTCGTCCTTAAGGAATTGGATCTACTGAATGATGATGCAAATGTGTATAAACTGATTGGTCCAGTACTCGTGAAGCAGGATCTGGCAGAAGCAAATGCGAACGTTCGCAAGCGAATAGACTACATCTCTGCTGAATTGTATGTTTTTTCATTTGTTTTT

Coding sequence (CDS)

ATGAGTTCTGCAAGCGCTCTTCGAGAACTACAGCGCGAGCTGGAGGCGAAAGCCAACGAGCTCAGCAAGCTACAGAAAGGCAAGCCTCCAATTGATTTTCGCTCCCCTGTTCCCACCACTTGCACGATTTATCGAAACTTCAATATTTCAATTAGATTACTGTGTCGAATGTTCTATCTGGATTCTGTACAATCAACTTACTTTCACAAAAACCCTAACTTGATGGATGTATCAGATATTGCGAAGAACCACCAAGTGAGGAAGAAATACACTATTCAGCTGGGTGAGAATGAGCTCGTCCTTAAGGAATTGGATCTACTGAATGATGATGCAAATGTGTATAAACTGATTGGTCCAGTACTCGTGAAGCAGGATCTGGCAGAAGCAAATGCGAACGTTCGCAAGCGAATAGACTACATCTCTGCTGAATTGTATGTTTTTTCATTTGTTTTT

Protein sequence

MSSASALRELQRELEAKANELSKLQKGKPPIDFRSPVPTTCTIYRNFNISIRLLCRMFYLDSVQSTYFHKNPNLMDVSDIAKNHQVRKKYTIQLGENELVLKELDLLNDDANVYKLIGPVLVKQDLAEANANVRKRIDYISAELYVFSFVF

Homology

[Close]

BLAST of MS013500.1 vs. NCBI nr
Match: KDP37967.1 (hypothetical protein JCGZ_04610 [Jatropha curcas])

HSP 1 Score: 155.2 bits (391), Expect = 4.4e-34
Identity = 89/146 (60.96%), Postives = 105/146 (71.92%), Query Frame = 0


Query: 1   MSSASALRELQRELEAKANELSKLQKGKPPIDFRSPVPTTCTIYRNFNISIRLLCRMFYL 60
           M+S++A+RELQR+LE KAN+LSK QKGK  + F +   + CT                  
Sbjct: 1   MASSTAIRELQRDLENKANDLSKHQKGKLLVSFFTEPYSICT------------------ 60

Query: 61  DSVQSTYFHKNPNL--MDVSDIAKNHQVRKKYTIQLGENELVLKELDLLNDDANVYKLIG 120
             +   +  KNP +    ++DIAKNHQVRKKYT+QLGENELVLKELDLL +DANVYKLIG
Sbjct: 61  -QLLIIFKDKNPKMTQQSMADIAKNHQVRKKYTVQLGENELVLKELDLLKEDANVYKLIG 120

Query: 121 PVLVKQDLAEANANVRKRIDYISAEL 145
           PVLVKQDLAEANANVRKRIDYISAEL
Sbjct: 121 PVLVKQDLAEANANVRKRIDYISAEL 127

[Close]

BLAST of MS013500.1 vs. NCBI nr
Match: MBA0779181.1 (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 154.1 bits (388), Expect = 9.8e-34
Identity = 92/150 (61.33%), Postives = 111/150 (74.00%), Query Frame = 0


Query: 2   SSASALRELQRELEAKANELSKLQKGKPPIDFRSPVPTTCTIYRNFNISIRLLCRMFYLD 61
           SS++ALR+LQR+LE KAN+LSKLQKGKP          T  ++ ++     LL ++    
Sbjct: 3   SSSTALRDLQRDLENKANDLSKLQKGKP--------NRTLVLFIHY-----LLSKV---- 62

Query: 62  SVQSTYFHKNPNLMDVSDIAKNHQVRKKYTIQLGENELVLKELDLLNDDANVYKLIGPVL 121
           S++  + +  P      DIAKNHQVRKKYTIQLGENELVLKELDLL +DANVYKLIGPVL
Sbjct: 63  SIEKQFCYFFP-----PDIAKNHQVRKKYTIQLGENELVLKELDLLKEDANVYKLIGPVL 122

Query: 122 VKQDLAEANANVRKRIDYISAELYVFSFVF 152
           VKQDLAEANANVRKRI+YISAELY   ++F
Sbjct: 123 VKQDLAEANANVRKRIEYISAELYASFYIF 130

[Close]

BLAST of MS013500.1 vs. NCBI nr
Match: KAG8494576.1 (hypothetical protein CXB51_011993 [Gossypium anomalum])

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-33
Identity = 95/143 (66.43%), Postives = 106/143 (74.13%), Query Frame = 0


Query: 2   SSASALRELQRELEAKANELSKLQKGKPPIDFRSPVPTTCTIYRNFNISIRLLCRMFYLD 61
           SS++ALRELQR+LE KAN+LSKLQKGKP         T   ++  F IS   L  +  L 
Sbjct: 3   SSSTALRELQRDLENKANDLSKLQKGKPN-------ETHSELFFFFFIS--YLLSILRLR 62

Query: 62  SVQSTYFHKNPNLMDVSDIAKNHQVRKKYTIQLGENELVLKELDLLNDDANVYKLIGPVL 121
           S    + +    L    DIAKNHQVRKKYTIQLGENELVLKELDLLN+DANVYKLIGPVL
Sbjct: 63  SPIVLFMYSLNGLS--PDIAKNHQVRKKYTIQLGENELVLKELDLLNEDANVYKLIGPVL 122

Query: 122 VKQDLAEANANVRKRIDYISAEL 145
           VKQDLAEANANVRKRI+YISAEL
Sbjct: 123 VKQDLAEANANVRKRIEYISAEL 134

[Close]

BLAST of MS013500.1 vs. NCBI nr
Match: KAA3479056.1 (prefoldin subunit 6-like [Gossypium australe])

HSP 1 Score: 151.4 bits (381), Expect = 6.4e-33
Identity = 91/150 (60.67%), Postives = 110/150 (73.33%), Query Frame = 0


Query: 2   SSASALRELQRELEAKANELSKLQKGKPPIDFRSPVPTTCTIYRNFNISIRLLCRMFYLD 61
           SS++A R+LQR+LE KAN+LSKLQKGKP          T  ++ ++     LL ++    
Sbjct: 3   SSSTAPRDLQRDLENKANDLSKLQKGKP--------NRTLVLFIHY-----LLSKV---- 62

Query: 62  SVQSTYFHKNPNLMDVSDIAKNHQVRKKYTIQLGENELVLKELDLLNDDANVYKLIGPVL 121
           S++  + +  P      DIAKNHQVRKKYTIQLGENELVLKELDLL +DANVYKLIGPVL
Sbjct: 63  SIEKQFCYFFP-----PDIAKNHQVRKKYTIQLGENELVLKELDLLKEDANVYKLIGPVL 122

Query: 122 VKQDLAEANANVRKRIDYISAELYVFSFVF 152
           VKQDLAEANANVRKRI+YISAELY   ++F
Sbjct: 123 VKQDLAEANANVRKRIEYISAELYASFYIF 130

[Close]

BLAST of MS013500.1 vs. NCBI nr
Match: MBA0870619.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-32
Identity = 90/145 (62.07%), Postives = 108/145 (74.48%), Query Frame = 0


Query: 2   SSASALRELQRELEAKANELSKLQKGKPPIDFRSPVPTTCTIYRNFNISIRLLCRMFYLD 61
           SS++ALR+LQ +LE KAN+LSKLQKGKP          T  ++ ++     LL ++    
Sbjct: 3   SSSAALRDLQLDLENKANDLSKLQKGKP--------NRTLVLFIHY-----LLSKV---- 62

Query: 62  SVQSTYFHKNPNLMDVSDIAKNHQVRKKYTIQLGENELVLKELDLLNDDANVYKLIGPVL 121
           S++  + +  P      DIAKNHQVRKKYTIQLGENELVLKELDLL +DANVYKLIGPVL
Sbjct: 63  SIEKQFCYFFP-----PDIAKNHQVRKKYTIQLGENELVLKELDLLKEDANVYKLIGPVL 122

Query: 122 VKQDLAEANANVRKRIDYISAELYV 147
           VKQDLAEANANVRKRI+YISAELY+
Sbjct: 123 VKQDLAEANANVRKRIEYISAELYI 125

[Close]

BLAST of MS013500.1 vs. ExPASy Swiss-Prot
Match: Q17Q89 (Prefoldin subunit 6 OS=Bos taurus OX=9913 GN=PFDN6 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.3e-11
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 79  DIAKNHQVRKKYTIQLGENELVLKELDLLNDDANVYKLIGPVLVKQDLAEANANVRKRID 138
           D++K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR+D
Sbjct: 22  DLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLD 81

Query: 139 YISAEL 145
           YI+AE+
Sbjct: 82  YITAEI 87

[Close]

BLAST of MS013500.1 vs. ExPASy Swiss-Prot
Match: Q5TJE6 (Prefoldin subunit 6 OS=Canis lupus familiaris OX=9615 GN=PFDN6 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.3e-11
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 79  DIAKNHQVRKKYTIQLGENELVLKELDLLNDDANVYKLIGPVLVKQDLAEANANVRKRID 138
           D++K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR+D
Sbjct: 22  DLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLD 81

Query: 139 YISAEL 145
           YI+AE+
Sbjct: 82  YITAEI 87

[Close]

BLAST of MS013500.1 vs. ExPASy Swiss-Prot
Match: O15212 (Prefoldin subunit 6 OS=Homo sapiens OX=9606 GN=PFDN6 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.3e-11
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 79  DIAKNHQVRKKYTIQLGENELVLKELDLLNDDANVYKLIGPVLVKQDLAEANANVRKRID 138
           D++K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR+D
Sbjct: 22  DLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLD 81

Query: 139 YISAEL 145
           YI+AE+
Sbjct: 82  YITAEI 87

[Close]

BLAST of MS013500.1 vs. ExPASy Swiss-Prot
Match: Q03958 (Prefoldin subunit 6 OS=Mus musculus OX=10090 GN=Pfdn6 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 9.3e-11
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 79  DIAKNHQVRKKYTIQLGENELVLKELDLLNDDANVYKLIGPVLVKQDLAEANANVRKRID 138
           D++K+   R+K   QL EN +V +EL LL+    V+KL+GPVLVKQ+L EA A V KR+D
Sbjct: 22  DLSKSMSGRQKLEAQLTENNIVKEELALLDGSNVVFKLLGPVLVKQELGEARATVGKRLD 81

Query: 139 YISAEL 145
           YI+AE+
Sbjct: 82  YITAEI 87

[Close]

BLAST of MS013500.1 vs. ExPASy Swiss-Prot
Match: Q9VW56 (Probable prefoldin subunit 6 OS=Drosophila melanogaster OX=7227 GN=Pfdn6 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.6e-10
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 0


Query: 93  QLGENELVLKELDLLNDDANVYKLIGPVLVKQDLAEANANVRKRIDYISAEL 145
           QL EN+ VL EL+LL  D  VYKL GPVLVKQ+L E+  NV KRI+YIS EL
Sbjct: 39  QLNENKCVLDELNLLGPDNKVYKLFGPVLVKQELEESRQNVGKRIEYISKEL 90

[Close]

BLAST of MS013500.1 vs. ExPASy TrEMBL
Match: A0A067KPA0 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04610 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.1e-34
Identity = 89/146 (60.96%), Postives = 105/146 (71.92%), Query Frame = 0


Query: 1   MSSASALRELQRELEAKANELSKLQKGKPPIDFRSPVPTTCTIYRNFNISIRLLCRMFYL 60
           M+S++A+RELQR+LE KAN+LSK QKGK  + F +   + CT                  
Sbjct: 1   MASSTAIRELQRDLENKANDLSKHQKGKLLVSFFTEPYSICT------------------ 60

Query: 61  DSVQSTYFHKNPNL--MDVSDIAKNHQVRKKYTIQLGENELVLKELDLLNDDANVYKLIG 120
             +   +  KNP +    ++DIAKNHQVRKKYT+QLGENELVLKELDLL +DANVYKLIG
Sbjct: 61  -QLLIIFKDKNPKMTQQSMADIAKNHQVRKKYTVQLGENELVLKELDLLKEDANVYKLIG 120

Query: 121 PVLVKQDLAEANANVRKRIDYISAEL 145
           PVLVKQDLAEANANVRKRIDYISAEL
Sbjct: 121 PVLVKQDLAEANANVRKRIDYISAEL 127

[Close]

BLAST of MS013500.1 vs. ExPASy TrEMBL
Match: A0A7J9F1X9 (Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_003455 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 4.8e-34
Identity = 92/150 (61.33%), Postives = 111/150 (74.00%), Query Frame = 0


Query: 2   SSASALRELQRELEAKANELSKLQKGKPPIDFRSPVPTTCTIYRNFNISIRLLCRMFYLD 61
           SS++ALR+LQR+LE KAN+LSKLQKGKP          T  ++ ++     LL ++    
Sbjct: 3   SSSTALRDLQRDLENKANDLSKLQKGKP--------NRTLVLFIHY-----LLSKV---- 62

Query: 62  SVQSTYFHKNPNLMDVSDIAKNHQVRKKYTIQLGENELVLKELDLLNDDANVYKLIGPVL 121
           S++  + +  P      DIAKNHQVRKKYTIQLGENELVLKELDLL +DANVYKLIGPVL
Sbjct: 63  SIEKQFCYFFP-----PDIAKNHQVRKKYTIQLGENELVLKELDLLKEDANVYKLIGPVL 122

Query: 122 VKQDLAEANANVRKRIDYISAELYVFSFVF 152
           VKQDLAEANANVRKRI+YISAELY   ++F
Sbjct: 123 VKQDLAEANANVRKRIEYISAELYASFYIF 130

[Close]

BLAST of MS013500.1 vs. ExPASy TrEMBL
Match: A0A5B6WCN9 (Prefoldin subunit 6-like OS=Gossypium australe OX=47621 GN=pfd-6 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 3.1e-33
Identity = 91/150 (60.67%), Postives = 110/150 (73.33%), Query Frame = 0


Query: 2   SSASALRELQRELEAKANELSKLQKGKPPIDFRSPVPTTCTIYRNFNISIRLLCRMFYLD 61
           SS++A R+LQR+LE KAN+LSKLQKGKP          T  ++ ++     LL ++    
Sbjct: 3   SSSTAPRDLQRDLENKANDLSKLQKGKP--------NRTLVLFIHY-----LLSKV---- 62

Query: 62  SVQSTYFHKNPNLMDVSDIAKNHQVRKKYTIQLGENELVLKELDLLNDDANVYKLIGPVL 121
           S++  + +  P      DIAKNHQVRKKYTIQLGENELVLKELDLL +DANVYKLIGPVL
Sbjct: 63  SIEKQFCYFFP-----PDIAKNHQVRKKYTIQLGENELVLKELDLLKEDANVYKLIGPVL 122

Query: 122 VKQDLAEANANVRKRIDYISAELYVFSFVF 152
           VKQDLAEANANVRKRI+YISAELY   ++F
Sbjct: 123 VKQDLAEANANVRKRIEYISAELYASFYIF 130

[Close]

BLAST of MS013500.1 vs. ExPASy TrEMBL
Match: A0A7J9MJP5 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_014947 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.3e-33
Identity = 90/145 (62.07%), Postives = 108/145 (74.48%), Query Frame = 0


Query: 2   SSASALRELQRELEAKANELSKLQKGKPPIDFRSPVPTTCTIYRNFNISIRLLCRMFYLD 61
           SS++ALR+LQ +LE KAN+LSKLQKGKP          T  ++ ++     LL ++    
Sbjct: 3   SSSAALRDLQLDLENKANDLSKLQKGKP--------NRTLVLFIHY-----LLSKV---- 62

Query: 62  SVQSTYFHKNPNLMDVSDIAKNHQVRKKYTIQLGENELVLKELDLLNDDANVYKLIGPVL 121
           S++  + +  P      DIAKNHQVRKKYTIQLGENELVLKELDLL +DANVYKLIGPVL
Sbjct: 63  SIEKQFCYFFP-----PDIAKNHQVRKKYTIQLGENELVLKELDLLKEDANVYKLIGPVL 122

Query: 122 VKQDLAEANANVRKRIDYISAELYV 147
           VKQDLAEANANVRKRI+YISAELY+
Sbjct: 123 VKQDLAEANANVRKRIEYISAELYI 125

[Close]

BLAST of MS013500.1 vs. ExPASy TrEMBL
Match: A0A7J8TJK2 (Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_025772 PE=3 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 6.9e-33
Identity = 90/150 (60.00%), Postives = 110/150 (73.33%), Query Frame = 0


Query: 2   SSASALRELQRELEAKANELSKLQKGKPPIDFRSPVPTTCTIYRNFNISIRLLCRMFYLD 61
           SS++ALR+LQ +LE KAN+LSKLQKGKP          T  ++ ++     LL ++    
Sbjct: 3   SSSTALRDLQSDLENKANDLSKLQKGKP--------NRTLVLFIHY-----LLSKV---- 62

Query: 62  SVQSTYFHKNPNLMDVSDIAKNHQVRKKYTIQLGENELVLKELDLLNDDANVYKLIGPVL 121
           S++  + +  P      DIAKNHQVRKKYTIQLGENELVLKEL+LL +DANVYKLIGPVL
Sbjct: 63  SIEKQFCYLFP-----PDIAKNHQVRKKYTIQLGENELVLKELNLLKEDANVYKLIGPVL 122

Query: 122 VKQDLAEANANVRKRIDYISAELYVFSFVF 152
           VKQDLAEANANVRKRI+YISAELY   ++F
Sbjct: 123 VKQDLAEANANVRKRIEYISAELYASFYIF 130

[Close]

BLAST of MS013500.1 vs. TAIR 10
Match: AT1G29990.1 (prefoldin 6 )

HSP 1 Score: 125.2 bits (313), Expect = 4.6e-29
Identity = 76/142 (53.52%), Postives = 85/142 (59.86%), Query Frame = 0


Query: 3   SASALRELQRELEAKANELSKLQKGKPPIDFRSPVPTTCTIYRNFNISIRLLCRMFYLDS 62
           S+S +R+LQR+LE KAN+L K+QK                                    
Sbjct: 2   SSSTVRDLQRDLENKANDLGKIQK------------------------------------ 61

Query: 63  VQSTYFHKNPNLMDVSDIAKNHQVRKKYTIQLGENELVLKELDLLNDDANVYKLIGPVLV 122
                           DI KNHQ+RKKYTIQLGENELVLKELDLL +DANVYKLIGPVLV
Sbjct: 62  ----------------DIGKNHQLRKKYTIQLGENELVLKELDLLEEDANVYKLIGPVLV 91

Query: 123 KQDLAEANANVRKRIDYISAEL 145
           KQDLAEANANVRKRI+YISAEL
Sbjct: 122 KQDLAEANANVRKRIEYISAEL 91

The following BLAST results are available for this feature:

BLAST of MS013500.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KDP37967.1	4.4e-34	60.96	hypothetical protein JCGZ_04610 [Jatropha curcas]	[more]
MBA0779181.1	9.8e-34	61.33	hypothetical protein [Gossypium trilobum]	[more]
KAG8494576.1	1.3e-33	66.43	hypothetical protein CXB51_011993 [Gossypium anomalum]	[more]
KAA3479056.1	6.4e-33	60.67	prefoldin subunit 6-like [Gossypium australe]	[more]
MBA0870619.1	1.1e-32	62.07	hypothetical protein [Gossypium schwendimanii]	[more]

BLAST of MS013500.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q17Q89	9.3e-11	53.03	Prefoldin subunit 6 OS=Bos taurus OX=9913 GN=PFDN6 PE=2 SV=1	[more]
Q5TJE6	9.3e-11	53.03	Prefoldin subunit 6 OS=Canis lupus familiaris OX=9615 GN=PFDN6 PE=3 SV=1	[more]
O15212	9.3e-11	53.03	Prefoldin subunit 6 OS=Homo sapiens OX=9606 GN=PFDN6 PE=1 SV=1	[more]
Q03958	9.3e-11	53.03	Prefoldin subunit 6 OS=Mus musculus OX=10090 GN=Pfdn6 PE=1 SV=1	[more]
Q9VW56	4.6e-10	65.38	Probable prefoldin subunit 6 OS=Drosophila melanogaster OX=7227 GN=Pfdn6 PE=2 SV...	[more]

BLAST of MS013500.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A067KPA0	2.1e-34	60.96	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_04610 PE=3 SV=1	[more]
A0A7J9F1X9	4.8e-34	61.33	Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_003455 PE=3 SV=1	[more]
A0A5B6WCN9	3.1e-33	60.67	Prefoldin subunit 6-like OS=Gossypium australe OX=47621 GN=pfd-6 PE=3 SV=1	[more]
A0A7J9MJP5	5.3e-33	62.07	Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_014947 PE=3...	[more]
A0A7J8TJK2	6.9e-33	60.00	Uncharacterized protein OS=Gossypium davidsonii OX=34287 GN=Godav_025772 PE=3 SV...	[more]

BLAST of MS013500.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29990.1	4.6e-29	53.52	prefoldin 6	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 4..27
None	No IPR available	PANTHER	PTHR21431	PREFOLDIN SUBUNIT 6	coord: 4..144
None	No IPR available	CDD	cd00632	Prefoldin_beta	coord: 87..144 e-value: 9.13127E-18 score: 71.6493
None	No IPR available	SUPERFAMILY	46579	Prefoldin	coord: 79..144
IPR002777	Prefoldin beta-like	PFAM	PF01920	Prefoldin_2	coord: 80..144 e-value: 1.5E-15 score: 57.1
IPR009053	Prefoldin	GENE3D	1.10.287.370		coord: 77..148 e-value: 4.2E-23 score: 83.3

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS013500	MS013500	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS013500.1-cds	MS013500.1-cds-scaffold402:2007105..2007251	CDS
MS013500.1-cds	MS013500.1-cds-scaffold402:2007701..2007787	CDS
MS013500.1-cds	MS013500.1-cds-scaffold402:2007790..2007903	CDS
MS013500.1-cds	MS013500.1-cds-scaffold402:2007906..2008010	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS013500.1	MS013500.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
cellular_component	GO:0016272	prefoldin complex
molecular_function	GO:0051082	unfolded protein binding