MS013494.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS013494.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	agamous-like MADS-box protein AGL29
Location	scaffold402: 1951452 .. 1951952 (+)
Sequence length	501
RNA-Seq Expression	MS013494.1
Synteny	MS013494.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGATGGTGAAGGATAGGAGCTCTAGGCAAGTTACCTTTTCGAAACGCCGGAACGGTCTGTTTAAGAAAGCGAACGATCTCGCTACTCTGTGCGGCTTAGAGATCGCGATTGTCGTCTTCTCGCCCGGCGGTAAGGCGTTCTCATTCGGCCATCCGAACGTCGAGGACGTGATCGATCGATACCTAAACCACGAATCGGAGCCGATTCCGCCGGCGAGGGAGGCCGGAATGATCGAGAAGGAGAATGAGGAACTTCTGGATCTGATCAAGCAGTTGCAATTGGAGAAGAGGAGGGGAGAGATTCTGGAGAAGGAGATGAAATCGAAAGAGGAATCGATCAAAATCGAGGATCTGAATTTCGATGAGCTTTTGAAATTGAAGGAATCGTTGGAAAAGCTGCGAGAAAATGTGAAAATCAAAGCGAGTGAACTGGAGGCGTCGTCTTCGTTGCTACTCCTGGCGAATGAACCAGTTATGGAGGCTGATCGCTCTGATACA

mRNA sequence

ATGAAGATGGTGAAGGATAGGAGCTCTAGGCAAGTTACCTTTTCGAAACGCCGGAACGGTCTGTTTAAGAAAGCGAACGATCTCGCTACTCTGTGCGGCTTAGAGATCGCGATTGTCGTCTTCTCGCCCGGCGGTAAGGCGTTCTCATTCGGCCATCCGAACGTCGAGGACGTGATCGATCGATACCTAAACCACGAATCGGAGCCGATTCCGCCGGCGAGGGAGGCCGGAATGATCGAGAAGGAGAATGAGGAACTTCTGGATCTGATCAAGCAGTTGCAATTGGAGAAGAGGAGGGGAGAGATTCTGGAGAAGGAGATGAAATCGAAAGAGGAATCGATCAAAATCGAGGATCTGAATTTCGATGAGCTTTTGAAATTGAAGGAATCGTTGGAAAAGCTGCGAGAAAATGTGAAAATCAAAGCGAGTGAACTGGAGGCGTCGTCTTCGTTGCTACTCCTGGCGAATGAACCAGTTATGGAGGCTGATCGCTCTGATACA

Coding sequence (CDS)

ATGAAGATGGTGAAGGATAGGAGCTCTAGGCAAGTTACCTTTTCGAAACGCCGGAACGGTCTGTTTAAGAAAGCGAACGATCTCGCTACTCTGTGCGGCTTAGAGATCGCGATTGTCGTCTTCTCGCCCGGCGGTAAGGCGTTCTCATTCGGCCATCCGAACGTCGAGGACGTGATCGATCGATACCTAAACCACGAATCGGAGCCGATTCCGCCGGCGAGGGAGGCCGGAATGATCGAGAAGGAGAATGAGGAACTTCTGGATCTGATCAAGCAGTTGCAATTGGAGAAGAGGAGGGGAGAGATTCTGGAGAAGGAGATGAAATCGAAAGAGGAATCGATCAAAATCGAGGATCTGAATTTCGATGAGCTTTTGAAATTGAAGGAATCGTTGGAAAAGCTGCGAGAAAATGTGAAAATCAAAGCGAGTGAACTGGAGGCGTCGTCTTCGTTGCTACTCCTGGCGAATGAACCAGTTATGGAGGCTGATCGCTCTGATACA

Protein sequence

MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVIDRYLNHESEPIPPAREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSKEESIKIEDLNFDELLKLKESLEKLRENVKIKASELEASSSLLLLANEPVMEADRSDT

Homology

[Close]

BLAST of MS013494.1 vs. NCBI nr
Match: XP_022140129.1 (agamous-like MADS-box protein AGL29 [Momordica charantia])

HSP 1 Score: 310.1 bits (793), Expect = 1.2e-80
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 60
           MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID
Sbjct: 8   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 67

Query: 61  RYLNHESEPIPPAREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSKEESIKIEDLN 120
           RYLNHESEPIPPAREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSKEESIKIEDLN
Sbjct: 68  RYLNHESEPIPPAREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSKEESIKIEDLN 127

Query: 121 FDELLKLKESLEKLRENVKIKASELEASSSLLLLANEPVMEADRSDT 168
           FDELLKLKESLEKLRENVKIKASELEASSSLLLLANEPVMEADRSDT
Sbjct: 128 FDELLKLKESLEKLRENVKIKASELEASSSLLLLANEPVMEADRSDT 174

[Close]

BLAST of MS013494.1 vs. NCBI nr
Match: KAG6583909.1 (Agamous-like MADS-box protein AGL29, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 263.1 bits (671), Expect = 1.7e-66
Identity = 140/165 (84.85%), Postives = 156/165 (94.55%), Query Frame = 0


Query: 1   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 60
           MKMVKDR SRQVTFSKRRNGLFKKANDLATLCGLEIAI+VFSPGGKAFSFG+PNVEDV+D
Sbjct: 8   MKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSFGNPNVEDVVD 67

Query: 61  RYLNHESEPIPPAREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSKEESIKIEDLN 120
           RYLN +SEPIPPA E GM EKENEEL+DL+KQLQLEK++GE+LEKEMKS+ ESIKIEDL+
Sbjct: 68  RYLNRKSEPIPPASE-GMFEKENEELIDLVKQLQLEKKKGEMLEKEMKSRGESIKIEDLD 127

Query: 121 FDELLKLKESLEKLRENVKIKASELEASSSLLLLANEPVMEADRS 166
            DELLKLKESLE+LR+NV++K SELEASSSLLLLANEPV+EAD S
Sbjct: 128 LDELLKLKESLERLRQNVRMKESELEASSSLLLLANEPVVEADAS 171

[Close]

BLAST of MS013494.1 vs. NCBI nr
Match: XP_022927257.1 (agamous-like MADS-box protein AGL29 [Cucurbita moschata])

HSP 1 Score: 262.3 bits (669), Expect = 2.8e-66
Identity = 140/165 (84.85%), Postives = 155/165 (93.94%), Query Frame = 0


Query: 1   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 60
           MKMVKDR SRQVTFSKRRNGLFKKANDLATLCGLEIAI+VFSPGGKAFSFG+PNVEDV+D
Sbjct: 8   MKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSFGNPNVEDVVD 67

Query: 61  RYLNHESEPIPPAREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSKEESIKIEDLN 120
           RYLN +SEPIPPA E GM EKENEEL+DL+KQLQLEK++GE+LEKEMKS+ ESIKIEDL+
Sbjct: 68  RYLNRKSEPIPPASE-GMFEKENEELIDLVKQLQLEKKKGEMLEKEMKSRGESIKIEDLD 127

Query: 121 FDELLKLKESLEKLRENVKIKASELEASSSLLLLANEPVMEADRS 166
            DELLKLKESLE+LR+NV +K SELEASSSLLLLANEPV+EAD S
Sbjct: 128 LDELLKLKESLERLRQNVSMKESELEASSSLLLLANEPVVEADAS 171

[Close]

BLAST of MS013494.1 vs. NCBI nr
Match: XP_023519112.1 (agamous-like MADS-box protein AGL29 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.3 bits (669), Expect = 2.8e-66
Identity = 140/165 (84.85%), Postives = 155/165 (93.94%), Query Frame = 0


Query: 1   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 60
           MKMVKDR SRQVTFSKRRNGLFKKANDLATLCGLEIAI+VFSPGGKAFSFG+PNVEDV+D
Sbjct: 8   MKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSFGNPNVEDVVD 67

Query: 61  RYLNHESEPIPPAREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSKEESIKIEDLN 120
           RYLN +SEPIPPA E GM EKENEEL+DL+KQLQLEK++GE+LEKEMKS+ ESIKIEDL+
Sbjct: 68  RYLNRKSEPIPPASE-GMFEKENEELIDLVKQLQLEKKKGEMLEKEMKSRGESIKIEDLD 127

Query: 121 FDELLKLKESLEKLRENVKIKASELEASSSLLLLANEPVMEADRS 166
            DELLKLKESLE LR+NV++K SELEASSSLLLLANEPV+EAD S
Sbjct: 128 LDELLKLKESLESLRQNVRMKESELEASSSLLLLANEPVVEADAS 171

[Close]

BLAST of MS013494.1 vs. NCBI nr
Match: KAG7019526.1 (Agamous-like MADS-box protein AGL29, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261.2 bits (666), Expect = 6.3e-66
Identity = 139/165 (84.24%), Postives = 156/165 (94.55%), Query Frame = 0


Query: 1   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 60
           MKMVKDR SRQVTFSKRRNGLFKKANDLATLCGLEIAI+VFSPGGKAFSFG+PNVEDV+D
Sbjct: 8   MKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSFGNPNVEDVVD 67

Query: 61  RYLNHESEPIPPAREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSKEESIKIEDLN 120
           RYLN +SEPIPPA E GM EKENEEL+DL+KQLQLEK++GE+LEKEMKS+ ESIKIEDL+
Sbjct: 68  RYLNRKSEPIPPASE-GMFEKENEELIDLVKQLQLEKKKGEMLEKEMKSRGESIKIEDLD 127

Query: 121 FDELLKLKESLEKLRENVKIKASELEASSSLLLLANEPVMEADRS 166
            +ELLKL+ESLE+LR+NV++K SELEASSSLLLLANEPVMEAD S
Sbjct: 128 LNELLKLRESLERLRKNVRMKESELEASSSLLLLANEPVMEADAS 171

[Close]

BLAST of MS013494.1 vs. ExPASy Swiss-Prot
Match: Q9FKK2 (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.8e-24
Identity = 68/159 (42.77%), Postives = 103/159 (64.78%), Query Frame = 0


Query: 1   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 60
           M  +K+ S+ QVTFSKRR+GLFKKA++L TLCG E+AIVVFSPG K FSFGHPNV+ VID
Sbjct: 13  MVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVID 72

Query: 61  RYLNHESEPIPP----------AREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSK 120
           R++N  + P+PP           R   +++  N  L  ++ QL+ EK++ + L K+++ K
Sbjct: 73  RFIN--NNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYDEL-KKIREK 132

Query: 121 EESI------KIEDLNFDELLKLKESLEKLRENVKIKAS 144
            +++       +E+L   +L   K +LE L++ V ++AS
Sbjct: 133 TKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEAS 168

[Close]

BLAST of MS013494.1 vs. ExPASy Swiss-Prot
Match: O64703 (Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 3.1e-23
Identity = 71/165 (43.03%), Postives = 109/165 (66.06%), Query Frame = 0


Query: 1   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 60
           M+MV+D ++RQVTFSKRR GLFKKA++LATLC  E+ IVVFSPGGK FS+G PN++ V +
Sbjct: 8   MEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPNLDSVAE 67

Query: 61  RYL-NHESEPIPPAREAGMIE---KENEELLDLIKQ-LQLEKRRGEILEKEMKSK-EESI 120
           R++  ++        ++G      K   E LDL+ Q ++ EK RGE  +++++S  +E  
Sbjct: 68  RFMREYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEKSQEKLESAGDERF 127

Query: 121 K--IEDLNFDELLKLKESLEKLRENVKIKASELEASSSLLLLANE 158
           K  IE L  DEL + K+ L+ +   ++ + + L+ASS L+LL+ +
Sbjct: 128 KESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQASSCLMLLSRK 172

[Close]

BLAST of MS013494.1 vs. ExPASy Swiss-Prot
Match: Q4PSU4 (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.9e-21
Identity = 62/153 (40.52%), Postives = 99/153 (64.71%), Query Frame = 0


Query: 1   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 60
           M  +K  S RQVTFSKRR GLFKKA++L TLCG EI I+VFSP  K FSFGHP+VE V+D
Sbjct: 69  MVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLD 128

Query: 61  RYLNHESEPIPPARE-----AGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSKEESIK 120
           RY++  +  +  +++     A   E  N +L  ++ +++ EK++G+ +E   + ++ES++
Sbjct: 129 RYVSRNNMSLAQSQQLQGSPAASCEL-NMQLTHILSEVEEEKKKGQAME---EMRKESVR 188

Query: 121 ----------IEDLNFDELLKLKESLEKLRENV 139
                     +E++N  +L ++K +LE+LR+ V
Sbjct: 189 RSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

[Close]

BLAST of MS013494.1 vs. ExPASy Swiss-Prot
Match: Q9LMM8 (Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 7.3e-17
Identity = 57/149 (38.26%), Postives = 89/149 (59.73%), Query Frame = 0


Query: 6   DRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID----R 65
           + S+ QVTFSKRR+GLFKK ++L TLC  EIAI+VFSP GKA+SFGHPNV  ++D    R
Sbjct: 18  NESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSFGHPNVNKLLDHSLGR 77

Query: 66  YLNHESEPIPPAREAGMIEKENEELLDLIKQLQLEKR-RGEILEKEMKSKEES----IKI 125
            + H +     +R    I+  NE L +++ + + E+  +  I++ E ++K+         
Sbjct: 78  VIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQNERENKDAEKWWRNSP 137

Query: 126 EDLNFDELLKLKESLEKLRENVKIKASEL 146
            +LN  +   +K  LE L++ V  K ++L
Sbjct: 138 TELNLAQSTSMKCDLEALKKEVDEKVAQL 166

[Close]

BLAST of MS013494.1 vs. ExPASy Swiss-Prot
Match: O64645 (MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.3e-16
Identity = 57/161 (35.40%), Postives = 95/161 (59.01%), Query Frame = 0


Query: 1   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 60
           MK +++ +SRQVTFSKRRNGL KKA +L+ LC  E+++++FSP GK + F   N++D ID
Sbjct: 8   MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTID 67

Query: 61  RYLNHESEPI--PPAREAGM--IEKENEELLDLIKQLQLEKRR------GEILEKEMKSK 120
           RYL H  + +   P  E  M  ++ E   ++  I+QL+  KR+      G    +E++  
Sbjct: 68  RYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQI 127

Query: 121 EESIK--IEDLNFDELLKLKESLEKLRENVKIKASELEASS 150
           E+ ++  ++ +   +    KE +E+L++  K  A+E E  S
Sbjct: 128 EQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLS 168

[Close]

BLAST of MS013494.1 vs. ExPASy TrEMBL
Match: A0A6J1CEW1 (agamous-like MADS-box protein AGL29 OS=Momordica charantia OX=3673 GN=LOC111010863 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 5.7e-81
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 1   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 60
           MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID
Sbjct: 8   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 67

Query: 61  RYLNHESEPIPPAREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSKEESIKIEDLN 120
           RYLNHESEPIPPAREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSKEESIKIEDLN
Sbjct: 68  RYLNHESEPIPPAREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSKEESIKIEDLN 127

Query: 121 FDELLKLKESLEKLRENVKIKASELEASSSLLLLANEPVMEADRSDT 168
           FDELLKLKESLEKLRENVKIKASELEASSSLLLLANEPVMEADRSDT
Sbjct: 128 FDELLKLKESLEKLRENVKIKASELEASSSLLLLANEPVMEADRSDT 174

[Close]

BLAST of MS013494.1 vs. ExPASy TrEMBL
Match: A0A6J1EGN3 (agamous-like MADS-box protein AGL29 OS=Cucurbita moschata OX=3662 GN=LOC111434156 PE=4 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.4e-66
Identity = 140/165 (84.85%), Postives = 155/165 (93.94%), Query Frame = 0


Query: 1   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 60
           MKMVKDR SRQVTFSKRRNGLFKKANDLATLCGLEIAI+VFSPGGKAFSFG+PNVEDV+D
Sbjct: 8   MKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSFGNPNVEDVVD 67

Query: 61  RYLNHESEPIPPAREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSKEESIKIEDLN 120
           RYLN +SEPIPPA E GM EKENEEL+DL+KQLQLEK++GE+LEKEMKS+ ESIKIEDL+
Sbjct: 68  RYLNRKSEPIPPASE-GMFEKENEELIDLVKQLQLEKKKGEMLEKEMKSRGESIKIEDLD 127

Query: 121 FDELLKLKESLEKLRENVKIKASELEASSSLLLLANEPVMEADRS 166
            DELLKLKESLE+LR+NV +K SELEASSSLLLLANEPV+EAD S
Sbjct: 128 LDELLKLKESLERLRQNVSMKESELEASSSLLLLANEPVVEADAS 171

[Close]

BLAST of MS013494.1 vs. ExPASy TrEMBL
Match: A0A6J1KIQ5 (agamous-like MADS-box protein AGL29 OS=Cucurbita maxima OX=3661 GN=LOC111495601 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.1e-66
Identity = 139/165 (84.24%), Postives = 156/165 (94.55%), Query Frame = 0


Query: 1   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 60
           MKMVKDR SRQVTFSKRRNGLFKKANDLATLCGLEIAI+VFSPGGKAFSFG+PNVE+V+D
Sbjct: 8   MKMVKDRGSRQVTFSKRRNGLFKKANDLATLCGLEIAIIVFSPGGKAFSFGNPNVEEVVD 67

Query: 61  RYLNHESEPIPPAREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSKEESIKIEDLN 120
           RYLN +SEPIPPA E GM EKENEEL+DL+KQLQLEK++GE+LEKEMKS+ ESIKIEDL+
Sbjct: 68  RYLNRKSEPIPPASE-GMFEKENEELIDLVKQLQLEKKKGEMLEKEMKSRGESIKIEDLD 127

Query: 121 FDELLKLKESLEKLRENVKIKASELEASSSLLLLANEPVMEADRS 166
            DELLKLKESLE+LR+NV++K SELEASSSLLLLANEPV+EAD S
Sbjct: 128 LDELLKLKESLERLRKNVRMKESELEASSSLLLLANEPVVEADAS 171

[Close]

BLAST of MS013494.1 vs. ExPASy TrEMBL
Match: A0A5A7UFJ7 (Agamous-like MADS-box protein AGL29 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00320 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 8.3e-56
Identity = 125/165 (75.76%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 1   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 60
           MKMVKDR SRQVTFSKRRNGLFKKA DLATLCGLEIAIVVFSPGGKAFSFG+PNVE+V+D
Sbjct: 8   MKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNPNVEEVVD 67

Query: 61  RYLNHE--SEPIPPAREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSKEESIKIED 120
           RYL+ E         RE GM+EKENEELLDL+KQLQ+EK++GE++EKEMKS+ E +KIED
Sbjct: 68  RYLSCEWKVNRNTAVRERGMLEKENEELLDLVKQLQMEKKKGEVMEKEMKSRGELMKIED 127

Query: 121 LNFDELLKLKESLEKLRENVKIKASELEASSSLLLLANEPVMEAD 164
           L+ +ELLKLKESLEKLR+NVKI+ SELEAS SLLLLANE  +  D
Sbjct: 128 LDLNELLKLKESLEKLRKNVKIEESELEASFSLLLLANEKPVRGD 172

[Close]

BLAST of MS013494.1 vs. ExPASy TrEMBL
Match: A0A1S3B9N7 (agamous-like MADS-box protein AGL29 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487550 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 8.3e-56
Identity = 125/165 (75.76%), Postives = 143/165 (86.67%), Query Frame = 0


Query: 1   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 60
           MKMVKDR SRQVTFSKRRNGLFKKA DLATLCGLEIAIVVFSPGGKAFSFG+PNVE+V+D
Sbjct: 8   MKMVKDRGSRQVTFSKRRNGLFKKATDLATLCGLEIAIVVFSPGGKAFSFGNPNVEEVVD 67

Query: 61  RYLNHE--SEPIPPAREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSKEESIKIED 120
           RYL+ E         RE GM+EKENEELLDL+KQLQ+EK++GE++EKEMKS+ E +KIED
Sbjct: 68  RYLSCEWKVNRNTAVRERGMLEKENEELLDLVKQLQMEKKKGEVMEKEMKSRGELMKIED 127

Query: 121 LNFDELLKLKESLEKLRENVKIKASELEASSSLLLLANEPVMEAD 164
           L+ +ELLKLKESLEKLR+NVKI+ SELEAS SLLLLANE  +  D
Sbjct: 128 LDLNELLKLKESLEKLRKNVKIEESELEASFSLLLLANEKPVRGD 172

[Close]

BLAST of MS013494.1 vs. TAIR 10
Match: AT5G60440.1 (AGAMOUS-like 62 )

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-25
Identity = 68/159 (42.77%), Postives = 103/159 (64.78%), Query Frame = 0


Query: 1   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 60
           M  +K+ S+ QVTFSKRR+GLFKKA++L TLCG E+AIVVFSPG K FSFGHPNV+ VID
Sbjct: 13  MVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVID 72

Query: 61  RYLNHESEPIPP----------AREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSK 120
           R++N  + P+PP           R   +++  N  L  ++ QL+ EK++ + L K+++ K
Sbjct: 73  RFIN--NNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYDEL-KKIREK 132

Query: 121 EESI------KIEDLNFDELLKLKESLEKLRENVKIKAS 144
            +++       +E+L   +L   K +LE L++ V ++AS
Sbjct: 133 TKALGNWWEDPVEELALSQLEGFKGNLENLKKVVTVEAS 168

[Close]

BLAST of MS013494.1 vs. TAIR 10
Match: AT2G34440.1 (AGAMOUS-like 29 )

HSP 1 Score: 109.8 bits (273), Expect = 2.2e-24
Identity = 71/165 (43.03%), Postives = 109/165 (66.06%), Query Frame = 0


Query: 1   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 60
           M+MV+D ++RQVTFSKRR GLFKKA++LATLC  E+ IVVFSPGGK FS+G PN++ V +
Sbjct: 8   MEMVQDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPNLDSVAE 67

Query: 61  RYL-NHESEPIPPAREAGMIE---KENEELLDLIKQ-LQLEKRRGEILEKEMKSK-EESI 120
           R++  ++        ++G      K   E LDL+ Q ++ EK RGE  +++++S  +E  
Sbjct: 68  RFMREYDDSDSGDEEKSGNYRPKLKRLSERLDLLNQEVEAEKERGEKSQEKLESAGDERF 127

Query: 121 K--IEDLNFDELLKLKESLEKLRENVKIKASELEASSSLLLLANE 158
           K  IE L  DEL + K+ L+ +   ++ + + L+ASS L+LL+ +
Sbjct: 128 KESIETLTLDELNEYKDRLQTVHGRIEGQVNHLQASSCLMLLSRK 172

[Close]

BLAST of MS013494.1 vs. TAIR 10
Match: AT2G24840.1 (AGAMOUS-like 61 )

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-22
Identity = 62/153 (40.52%), Postives = 99/153 (64.71%), Query Frame = 0


Query: 1   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 60
           M  +K  S RQVTFSKRR GLFKKA++L TLCG EI I+VFSP  K FSFGHP+VE V+D
Sbjct: 69  MVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLD 128

Query: 61  RYLNHESEPIPPARE-----AGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSKEESIK 120
           RY++  +  +  +++     A   E  N +L  ++ +++ EK++G+ +E   + ++ES++
Sbjct: 129 RYVSRNNMSLAQSQQLQGSPAASCEL-NMQLTHILSEVEEEKKKGQAME---EMRKESVR 188

Query: 121 ----------IEDLNFDELLKLKESLEKLRENV 139
                     +E++N  +L ++K +LE+LR+ V
Sbjct: 189 RSMINWWEKPVEEMNMVQLQEMKYALEELRKTV 217

[Close]

BLAST of MS013494.1 vs. TAIR 10
Match: AT3G66656.1 (AGAMOUS-like 91 )

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-22
Identity = 64/170 (37.65%), Postives = 103/170 (60.59%), Query Frame = 0


Query: 1   MKMVKDRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID 60
           M+ V+D +++QVTFSKRR GLFKKA++LATLC  E+ IVVFSPG K +SFG PN + + +
Sbjct: 8   MEKVQDTNTKQVTFSKRRLGLFKKASELATLCNAEVGIVVFSPGNKPYSFGKPNFDVIAE 67

Query: 61  RYLNH----------ESEPIPPAREAGMIEKENEELLDLIKQLQLEKRRGEILEKEMKSK 120
           R+ N           E+        A   +K  + L  + ++ + EK+ GE L K ++S 
Sbjct: 68  RFKNEFEEEEEGDSCETSGYSRGNRARQEKKICKRLNSITEEAEAEKKHGEDLHKWLESA 127

Query: 121 EE---SIKIEDLNFDELLKLKESLEKLRENVKIKASELEASSSLLLLANE 158
           E+   +  IE+L  +EL + +  ++K+   ++   S ++ASSSL+ L+N+
Sbjct: 128 EQDKFNKPIEELTLEELKEFEAKIKKISCGIQSNISHMQASSSLMFLSND 177

[Close]

BLAST of MS013494.1 vs. TAIR 10
Match: AT1G01530.1 (AGAMOUS-like 28 )

HSP 1 Score: 88.6 bits (218), Expect = 5.2e-18
Identity = 57/149 (38.26%), Postives = 89/149 (59.73%), Query Frame = 0


Query: 6   DRSSRQVTFSKRRNGLFKKANDLATLCGLEIAIVVFSPGGKAFSFGHPNVEDVID----R 65
           + S+ QVTFSKRR+GLFKK ++L TLC  EIAI+VFSP GKA+SFGHPNV  ++D    R
Sbjct: 18  NESNLQVTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSFGHPNVNKLLDHSLGR 77

Query: 66  YLNHESEPIPPAREAGMIEKENEELLDLIKQLQLEKR-RGEILEKEMKSKEES----IKI 125
            + H +     +R    I+  NE L +++ + + E+  +  I++ E ++K+         
Sbjct: 78  VIRHNNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQNERENKDAEKWWRNSP 137

Query: 126 EDLNFDELLKLKESLEKLRENVKIKASEL 146
            +LN  +   +K  LE L++ V  K ++L
Sbjct: 138 TELNLAQSTSMKCDLEALKKEVDEKVAQL 166

The following BLAST results are available for this feature:

BLAST of MS013494.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140129.1	1.2e-80	100.00	agamous-like MADS-box protein AGL29 [Momordica charantia]	[more]
KAG6583909.1	1.7e-66	84.85	Agamous-like MADS-box protein AGL29, partial [Cucurbita argyrosperma subsp. soro...	[more]
XP_022927257.1	2.8e-66	84.85	agamous-like MADS-box protein AGL29 [Cucurbita moschata]	[more]
XP_023519112.1	2.8e-66	84.85	agamous-like MADS-box protein AGL29 [Cucurbita pepo subsp. pepo]	[more]
KAG7019526.1	6.3e-66	84.24	Agamous-like MADS-box protein AGL29, partial [Cucurbita argyrosperma subsp. argy...	[more]

BLAST of MS013494.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKK2	4.8e-24	42.77	Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana OX=3702 GN=AGL62 PE=...	[more]
O64703	3.1e-23	43.03	Agamous-like MADS-box protein AGL29 OS=Arabidopsis thaliana OX=3702 GN=AGL29 PE=...	[more]
Q4PSU4	2.9e-21	40.52	Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana OX=3702 GN=AGL61 PE=...	[more]
Q9LMM8	7.3e-17	38.26	Agamous-like MADS-box protein AGL28 OS=Arabidopsis thaliana OX=3702 GN=AGL28 PE=...	[more]
O64645	1.3e-16	35.40	MADS-box protein SOC1 OS=Arabidopsis thaliana OX=3702 GN=SOC1 PE=1 SV=1	[more]

BLAST of MS013494.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CEW1	5.7e-81	100.00	agamous-like MADS-box protein AGL29 OS=Momordica charantia OX=3673 GN=LOC1110108...	[more]
A0A6J1EGN3	1.4e-66	84.85	agamous-like MADS-box protein AGL29 OS=Cucurbita moschata OX=3662 GN=LOC11143415...	[more]
A0A6J1KIQ5	3.1e-66	84.24	agamous-like MADS-box protein AGL29 OS=Cucurbita maxima OX=3661 GN=LOC111495601 ...	[more]
A0A5A7UFJ7	8.3e-56	75.76	Agamous-like MADS-box protein AGL29 isoform X1 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3B9N7	8.3e-56	75.76	agamous-like MADS-box protein AGL29 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of MS013494.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G60440.1	3.4e-25	42.77	AGAMOUS-like 62	[more]
AT2G34440.1	2.2e-24	43.03	AGAMOUS-like 29	[more]
AT2G24840.1	2.0e-22	40.52	AGAMOUS-like 61	[more]
AT3G66656.1	3.5e-22	37.65	AGAMOUS-like 91	[more]
AT1G01530.1	5.2e-18	38.26	AGAMOUS-like 28	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 76..113
None	No IPR available	COILS	Coil	Coil	coord: 121..148
None	No IPR available	PANTHER	PTHR11945:SF229	AGAMOUS-LIKE MADS-BOX PROTEIN AGL29	coord: 3..164
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 3..164
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 31..52 score: 38.1 coord: 16..31 score: 64.15
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 1..53 e-value: 8.9E-23 score: 91.7
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 5..50 e-value: 1.2E-23 score: 82.4
IPR002100	Transcription factor, MADS-box	PROSITE	PS50066	MADS_BOX_2	coord: 1..54 score: 22.244915
IPR036879	Transcription factor, MADS-box superfamily	GENE3D	3.40.1810.10		coord: 6..69 e-value: 2.8E-27 score: 96.3
IPR036879	Transcription factor, MADS-box superfamily	SUPERFAMILY	55455	SRF-like	coord: 1..67

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS013494	MS013494	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS013494.1-cds	MS013494.1-cds-scaffold402:1951452..1951952	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS013494.1	MS013494.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity