MS013488.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS013488.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	scaffold402: 1919573 .. 1920771 (-)
Sequence length	795
RNA-Seq Expression	MS013488.1
Synteny	MS013488.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCTCAACAATGGCTCTCTCCTCCCCCTCACTCGCCGGAAAGGCAGTGAAGCTCACACCCTCCTCCCCCGAGCTTCTCGGCAATGGGAGAGTTAGCATGAGGAAATCTGTCTCCAAGTCCGTTTCTTCCGGAAGTCCATGGTACGGACCCGACCGTGTTAAGTATTTGGGCCCATTCTCCGGCGAGCCTCCCTCCTACCTGACTGGAGAGTTTCCCGGCGACTATGGCTGGGACACTGCCGGACTTTCTGCAGACCCCGAGACCTTTGCCAAGAACCGTGAGCTCGAAGTCATCCACTCAAGGTTAGAAGCAAGCTAGAAAATTTCTAACTTTTCATATACACAATCTTAAAATTCTATAGTTTTATAATTTTACTTTAAGAAGAAAACAAATTTGGTCATTTATGACATTTGAAGTTGTTTTGGACCCTAATTTTAAATTGTCTAATAAATCTCCGAACTATTAATTTTGTCTAGTAAGCTCTTGAACCATTAAGTGTCTTTTGAACTAGAGACTTGTTAGACACAAGAATGGTAAGTTCTAGGACTTGATACAAAACTAAAAGTGGAAGAATCTGTTTAAGGCTTCTATAAAATTTATAAAGTTTACGACCATCTTGTAACTTAGCCTATATATAATCTCAAATTGGGGATAAACTAGAGGAAAAAGTAAAGATCTTCCCTTCTTGGCTTTGCCCTTGTTGTAGGTGGGCCATGCTTGGGGCGTTGGGCTGCGTCTTCCCTGAGCTTTTGTCCCGAAACGGCGTGAAGTTTGGAGAAGCGGTGTGGTTCAAGGCGGGATCTCAGATCTTCAGTGAGGGCGGGCTCGACTACTTGGGAAACCCGAGCTTGATCCACGCACAGAGCATTCTAGCCATTTGGGCGACACAGGTGGTTCTCATGGGGGCTGTCGAGGGATACCGTATTGCCGGTGGCCCACTCGGCGAGGTTACTGACCCGATTTACCCGGGTGGGAGCTTTGACCCATTGGGGCTTGCAGATGACCCGGAAGCTTTTGCAGAGCTAAAGGTGAAGGAGTTGAAGAATGGGAGATTGGCCATGTTCTCCATGTTTGGATTCTTCGTTCAGGCCATTGTCACTGGAAAGGGTCCGTTGGAGAATCTTGCTGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCTTATGCCACCAACTTTGTTCCTGGGAAA

mRNA sequence

ATGGCGGCCTCAACAATGGCTCTCTCCTCCCCCTCACTCGCCGGAAAGGCAGTGAAGCTCACACCCTCCTCCCCCGAGCTTCTCGGCAATGGGAGAGTTAGCATGAGGAAATCTGTCTCCAAGTCCGTTTCTTCCGGAAGTCCATGGTACGGACCCGACCGTGTTAAGTATTTGGGCCCATTCTCCGGCGAGCCTCCCTCCTACCTGACTGGAGAGTTTCCCGGCGACTATGGCTGGGACACTGCCGGACTTTCTGCAGACCCCGAGACCTTTGCCAAGAACCGTGAGCTCGAAGTCATCCACTCAAGGTGGGCCATGCTTGGGGCGTTGGGCTGCGTCTTCCCTGAGCTTTTGTCCCGAAACGGCGTGAAGTTTGGAGAAGCGGTGTGGTTCAAGGCGGGATCTCAGATCTTCAGTGAGGGCGGGCTCGACTACTTGGGAAACCCGAGCTTGATCCACGCACAGAGCATTCTAGCCATTTGGGCGACACAGGTGGTTCTCATGGGGGCTGTCGAGGGATACCGTATTGCCGGTGGCCCACTCGGCGAGGTTACTGACCCGATTTACCCGGGTGGGAGCTTTGACCCATTGGGGCTTGCAGATGACCCGGAAGCTTTTGCAGAGCTAAAGGTGAAGGAGTTGAAGAATGGGAGATTGGCCATGTTCTCCATGTTTGGATTCTTCGTTCAGGCCATTGTCACTGGAAAGGGTCCGTTGGAGAATCTTGCTGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCTTATGCCACCAACTTTGTTCCTGGGAAA

Coding sequence (CDS)

ATGGCGGCCTCAACAATGGCTCTCTCCTCCCCCTCACTCGCCGGAAAGGCAGTGAAGCTCACACCCTCCTCCCCCGAGCTTCTCGGCAATGGGAGAGTTAGCATGAGGAAATCTGTCTCCAAGTCCGTTTCTTCCGGAAGTCCATGGTACGGACCCGACCGTGTTAAGTATTTGGGCCCATTCTCCGGCGAGCCTCCCTCCTACCTGACTGGAGAGTTTCCCGGCGACTATGGCTGGGACACTGCCGGACTTTCTGCAGACCCCGAGACCTTTGCCAAGAACCGTGAGCTCGAAGTCATCCACTCAAGGTGGGCCATGCTTGGGGCGTTGGGCTGCGTCTTCCCTGAGCTTTTGTCCCGAAACGGCGTGAAGTTTGGAGAAGCGGTGTGGTTCAAGGCGGGATCTCAGATCTTCAGTGAGGGCGGGCTCGACTACTTGGGAAACCCGAGCTTGATCCACGCACAGAGCATTCTAGCCATTTGGGCGACACAGGTGGTTCTCATGGGGGCTGTCGAGGGATACCGTATTGCCGGTGGCCCACTCGGCGAGGTTACTGACCCGATTTACCCGGGTGGGAGCTTTGACCCATTGGGGCTTGCAGATGACCCGGAAGCTTTTGCAGAGCTAAAGGTGAAGGAGTTGAAGAATGGGAGATTGGCCATGTTCTCCATGTTTGGATTCTTCGTTCAGGCCATTGTCACTGGAAAGGGTCCGTTGGAGAATCTTGCTGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCTTATGCCACCAACTTTGTTCCTGGGAAA

Protein sequence

MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK

Homology

[Close]

BLAST of MS013488.1 vs. NCBI nr
Match: XP_022142169.1 (chlorophyll a-b binding protein of LHCII type 1-like [Momordica charantia])

HSP 1 Score: 536.2 bits (1380), Expect = 1.6e-148
Identity = 262/265 (98.87%), Postives = 264/265 (99.62%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRK VSKSVSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKFVSKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIF+EGGLDYLGNPSLIHAQSILAIWA+QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MS013488.1 vs. NCBI nr
Match: XP_022139935.1 (chlorophyll a-b binding protein 3, chloroplastic-like [Momordica charantia])

HSP 1 Score: 534.3 bits (1375), Expect = 6.1e-148
Identity = 261/264 (98.86%), Postives = 263/264 (99.62%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRK VSKSVSSGSPWYGPDRVKYLGP
Sbjct: 26  MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKFVSKSVSSGSPWYGPDRVKYLGP 85

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 86  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 145

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIF+EGGLDYLGNPSLIHAQSILAIWA+QVVLMGAVEGYRIAGGP
Sbjct: 146 NGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 205

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 206 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 265

Query: 241 NLADHLADPVNNNAWAYATNFVPG 265
           NLADHLADPVNNNAWAYATNFVPG
Sbjct: 266 NLADHLADPVNNNAWAYATNFVPG 289

[Close]

BLAST of MS013488.1 vs. NCBI nr
Match: XP_038877609.1 (chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida])

HSP 1 Score: 533.1 bits (1372), Expect = 1.4e-147
Identity = 262/266 (98.50%), Postives = 264/266 (99.25%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGN-GRVSMRKSVSKSVSSGSPWYGPDRVKYLG 60
           MAASTMALSSPSLAGKAVKLTPSSPELLGN GRVSMRKS SKS+SSGSPWYGPDRVKYLG
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGGRVSMRKSASKSISSGSPWYGPDRVKYLG 60

Query: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS
Sbjct: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGG 180
           RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA+QVVLMGAVEGYRIAGG
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGG 180

Query: 181 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240
           PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 241 ENLADHLADPVNNNAWAYATNFVPGK 266
           ENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 ENLADHLADPVNNNAWAYATNFVPGK 266

[Close]

BLAST of MS013488.1 vs. NCBI nr
Match: XP_008444193.1 (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo] >KAA0053968.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo var. makuwa] >TYK20653.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 531.9 bits (1369), Expect = 3.0e-147
Identity = 259/265 (97.74%), Postives = 262/265 (98.87%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPSSPEL GN RV+MRKS +KSVSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELFGNSRVNMRKSAAKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA+QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MS013488.1 vs. NCBI nr
Match: XP_021904725.1 (chlorophyll a-b binding protein of LHCII type 1 [Carica papaya] >QJF74546.1 light-harvesting chlorophyll a/b-binding protein [Carica papaya])

HSP 1 Score: 531.6 bits (1368), Expect = 4.0e-147
Identity = 256/265 (96.60%), Postives = 263/265 (99.25%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKL+PS+PEL+GNGRVSMRK+ SKSVSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPSAPELMGNGRVSMRKTASKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQV+LMGAVEGYR+AGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRVAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MS013488.1 vs. ExPASy Swiss-Prot
Match: P09756 (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max OX=3847 GN=CAB3 PE=3 SV=1)

HSP 1 Score: 514.2 bits (1323), Expect = 8.6e-145
Identity = 252/264 (95.45%), Postives = 258/264 (97.73%), Query Frame = 0


Query: 2   AASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVSSGSPWYGPDRVKYLGPF 61
           AAS+MALSSPSLAGKAVKL PS+PE+   GRVSMRK+V+K VSSGSPWYGPDRVKYLGPF
Sbjct: 3   AASSMALSSPSLAGKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPF 62

Query: 62  SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 121
           SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN
Sbjct: 63  SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRN 122

Query: 122 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPL 181
           GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQV+LMGAVEGYRIAGGPL
Sbjct: 123 GVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGPL 182

Query: 182 GEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 241
           GEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN
Sbjct: 183 GEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLEN 242

Query: 242 LADHLADPVNNNAWAYATNFVPGK 266
           LADHLA PVNNNAWAYATNFVPGK
Sbjct: 243 LADHLAGPVNNNAWAYATNFVPGK 263

[Close]

BLAST of MS013488.1 vs. ExPASy Swiss-Prot
Match: P27493 (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB21 PE=2 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 2.8e-143
Identity = 242/265 (91.32%), Postives = 257/265 (96.98%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVSSGSPWYGPDRVKYLGP 60
           MAA+TMALSSPS AG+AVKL+PS+PE+ GNGRVSMRK+V+K V+S SPWYGPDRVKYLGP
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEV DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MS013488.1 vs. ExPASy Swiss-Prot
Match: P27495 (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB40 PE=2 SV=1)

HSP 1 Score: 506.9 bits (1304), Expect = 1.4e-142
Identity = 245/267 (91.76%), Postives = 257/267 (96.25%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVS--KSVSSGSPWYGPDRVKYL 60
           MAASTMALSSPS AGKAVKL+PSS E+ GNG+V+MRK+ S  K+VSSGSPWYGPDRVKYL
Sbjct: 1   MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELL 120
           GPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELL 120

Query: 121 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG 180
           +RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYR+AG
Sbjct: 121 ARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG 180

Query: 181 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGEV DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 266
           LENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of MS013488.1 vs. ExPASy Swiss-Prot
Match: P08221 (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 505.4 bits (1300), Expect = 4.0e-142
Identity = 240/255 (94.12%), Postives = 250/255 (98.04%), Query Frame = 0


Query: 11  PSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLT 70
           P+LAG+AVKL+P++PE+ GN + +MRK+ SKSVSSGSPWYGPDRVKYLGPFSGEPPSYLT
Sbjct: 1   PTLAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLT 60

Query: 71  GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVW 130
           GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVW
Sbjct: 61  GEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVW 120

Query: 131 FKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGPLGEVTDPIYP 190
           FKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYRIAGGPLGEVTDPIYP
Sbjct: 121 FKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPIYP 180

Query: 191 GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 250
           GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV
Sbjct: 181 GGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPV 240

Query: 251 NNNAWAYATNFVPGK 266
           NNNAWAYATNFVPGK
Sbjct: 241 NNNAWAYATNFVPGK 255

[Close]

BLAST of MS013488.1 vs. ExPASy Swiss-Prot
Match: P07370 (Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB1B PE=3 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 2.0e-141
Identity = 240/265 (90.57%), Postives = 255/265 (96.23%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVSSGSPWYGPDRVKYLGP 60
           MAA+TMALSSPS AG+AVKL+PS+ E+ GNGR++MRK+V+KS  S SPWYGPDRVKYLGP
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+R
Sbjct: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL+HAQSILAIWA QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEV DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAFATNFVPGK 265

[Close]

BLAST of MS013488.1 vs. ExPASy TrEMBL
Match: A0A6J1CKT5 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012353 PE=3 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 7.8e-149
Identity = 262/265 (98.87%), Postives = 264/265 (99.62%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRK VSKSVSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKFVSKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIF+EGGLDYLGNPSLIHAQSILAIWA+QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MS013488.1 vs. ExPASy TrEMBL
Match: A0A6J1CDN4 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010725 PE=3 SV=1)

HSP 1 Score: 534.3 bits (1375), Expect = 3.0e-148
Identity = 261/264 (98.86%), Postives = 263/264 (99.62%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRK VSKSVSSGSPWYGPDRVKYLGP
Sbjct: 26  MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKFVSKSVSSGSPWYGPDRVKYLGP 85

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 86  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 145

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIF+EGGLDYLGNPSLIHAQSILAIWA+QVVLMGAVEGYRIAGGP
Sbjct: 146 NGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 205

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 206 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 265

Query: 241 NLADHLADPVNNNAWAYATNFVPG 265
           NLADHLADPVNNNAWAYATNFVPG
Sbjct: 266 NLADHLADPVNNNAWAYATNFVPG 289

[Close]

BLAST of MS013488.1 vs. ExPASy TrEMBL
Match: A0A5D3DAQ5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00370 PE=3 SV=1)

HSP 1 Score: 531.9 bits (1369), Expect = 1.5e-147
Identity = 259/265 (97.74%), Postives = 262/265 (98.87%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPSSPEL GN RV+MRKS +KSVSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELFGNSRVNMRKSAAKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA+QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MS013488.1 vs. ExPASy TrEMBL
Match: A0A1S3BAK6 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487605 PE=3 SV=1)

HSP 1 Score: 531.9 bits (1369), Expect = 1.5e-147
Identity = 259/265 (97.74%), Postives = 262/265 (98.87%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPSSPEL GN RV+MRKS +KSVSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELFGNSRVNMRKSAAKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWA+QVVLMGAVEGYRIAGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MS013488.1 vs. ExPASy TrEMBL
Match: A0A6M3WGX2 (Chlorophyll a-b binding protein, chloroplastic OS=Carica papaya OX=3649 GN=Lhcb1.1 PE=3 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 1.9e-147
Identity = 256/265 (96.60%), Postives = 263/265 (99.25%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKL+PS+PEL+GNGRVSMRK+ SKSVSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLSPSAPELMGNGRVSMRKTASKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLSR
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAGGP 180
           NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQV+LMGAVEGYR+AGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRVAGGP 180

Query: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLE 240
           LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLE
Sbjct: 181 LGEVTDPIYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE 240

Query: 241 NLADHLADPVNNNAWAYATNFVPGK 266
           NLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 NLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of MS013488.1 vs. TAIR 10
Match: AT2G34430.1 (light-harvesting chlorophyll-protein complex II subunit B1 )

HSP 1 Score: 486.9 bits (1252), Expect = 1.0e-137
Identity = 234/266 (87.97%), Postives = 251/266 (94.36%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSP+L GKAVKL+P++ E+ G GR++MRK+   +  SGSPWYG DRVKYLGP
Sbjct: 1   MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRKASKPTGPSGSPWYGSDRVKYLGP 60

Query: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120
           FSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+R
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLAR 120

Query: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG-G 180
           NGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWATQV+LMGAVEGYR+AG G
Sbjct: 121 NGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDG 180

Query: 181 PLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240
           PLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL
Sbjct: 181 PLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 240

Query: 241 ENLADHLADPVNNNAWAYATNFVPGK 266
           ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 ENLADHLADPVNNNAWAFATNFVPGK 266

[Close]

BLAST of MS013488.1 vs. TAIR 10
Match: AT1G29930.1 (chlorophyll A/B binding protein 1 )

HSP 1 Score: 485.7 bits (1249), Expect = 2.3e-137
Identity = 236/267 (88.39%), Postives = 254/267 (95.13%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVS-SGSPWYGPDRVKYLG 60
           MAASTMALSSP+ AGKAVKL+P++ E+LG+GRV+MRK+V+K    SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWATQV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query: 181 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 266
           +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of MS013488.1 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 483.8 bits (1244), Expect = 8.8e-137
Identity = 235/267 (88.01%), Postives = 253/267 (94.76%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVS-SGSPWYGPDRVKYLG 60
           MAASTMALSSP+ AGKAV L+P++ E+LG+GRV+MRK+V+K    SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWATQV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query: 181 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 266
           +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of MS013488.1 vs. TAIR 10
Match: AT1G29920.1 (chlorophyll A/B-binding protein 2 )

HSP 1 Score: 483.8 bits (1244), Expect = 8.8e-137
Identity = 235/267 (88.01%), Postives = 253/267 (94.76%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVS-SGSPWYGPDRVKYLG 60
           MAASTMALSSP+ AGKAV L+P++ E+LG+GRV+MRK+V+K    SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWATQV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGN 180

Query: 181 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 266
           +ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 IENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of MS013488.1 vs. TAIR 10
Match: AT2G34420.1 (photosystem II light harvesting complex gene B1B2 )

HSP 1 Score: 480.3 bits (1235), Expect = 9.8e-136
Identity = 235/267 (88.01%), Postives = 253/267 (94.76%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVS-SGSPWYGPDRVKYLG 60
           MA+STMALSSP+ AGKAVK  P++ ++LG+GRV+MRK+V+K    SGSPWYG DRVKYLG
Sbjct: 1   MASSTMALSSPAFAGKAVK--PAASDVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPELL+
Sbjct: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLA 120

Query: 121 RNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIAG- 180
           RNGVKFGEAVWFKAGSQIFS+GGLDYLGNPSL+HAQSILAIWATQV+LMGAVEGYR+AG 
Sbjct: 121 RNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGD 180

Query: 181 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240
           GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 181 GPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 240

Query: 241 LENLADHLADPVNNNAWAYATNFVPGK 266
           LENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 LENLADHLADPVNNNAWAFATNFVPGK 265

The following BLAST results are available for this feature:

BLAST of MS013488.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142169.1	1.6e-148	98.87	chlorophyll a-b binding protein of LHCII type 1-like [Momordica charantia]	[more]
XP_022139935.1	6.1e-148	98.86	chlorophyll a-b binding protein 3, chloroplastic-like [Momordica charantia]	[more]
XP_038877609.1	1.4e-147	98.50	chlorophyll a-b binding protein of LHCII type 1-like [Benincasa hispida]	[more]
XP_008444193.1	3.0e-147	97.74	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo] >...	[more]
XP_021904725.1	4.0e-147	96.60	chlorophyll a-b binding protein of LHCII type 1 [Carica papaya] >QJF74546.1 ligh...	[more]

BLAST of MS013488.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P09756	8.6e-145	95.45	Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max OX=3847 GN=CAB3 ...	[more]
P27493	2.8e-143	91.32	Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]
P27495	1.4e-142	91.76	Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]
P08221	4.0e-142	94.12	Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cuc...	[more]
P07370	2.0e-141	90.57	Chlorophyll a-b binding protein 1B, chloroplastic OS=Solanum lycopersicum OX=408...	[more]

BLAST of MS013488.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CKT5	7.8e-149	98.87	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1CDN4	3.0e-148	98.86	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A5D3DAQ5	1.5e-147	97.74	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3BAK6	1.5e-147	97.74	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6M3WGX2	1.9e-147	96.60	Chlorophyll a-b binding protein, chloroplastic OS=Carica papaya OX=3649 GN=Lhcb1...	[more]

BLAST of MS013488.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34430.1	1.0e-137	87.97	light-harvesting chlorophyll-protein complex II subunit B1	[more]
AT1G29930.1	2.3e-137	88.39	chlorophyll A/B binding protein 1	[more]
AT1G29910.1	8.8e-137	88.01	chlorophyll A/B binding protein 3	[more]
AT1G29920.1	8.8e-137	88.01	chlorophyll A/B-binding protein 2	[more]
AT2G34420.1	9.8e-136	88.01	photosystem II light harvesting complex gene B1B2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 65..231 e-value: 1.5E-49 score: 168.7
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 56..258 e-value: 4.8E-91 score: 306.1
None	No IPR available	PANTHER	PTHR21649:SF88	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 1..265
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 48..262
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..265

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS013488	MS013488	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS013488.1-cds	MS013488.1-cds-scaffold402:1919573..1920059	CDS
MS013488.1-cds	MS013488.1-cds-scaffold402:1920464..1920771	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS013488.1	MS013488.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0016020	membrane