MS013461.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS013461.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	signal recognition particle 14 kDa protein
Location	scaffold402: 1704021 .. 1705179 (-)
Sequence length	351
RNA-Seq Expression	MS013461.1
Synteny	MS013461.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCTATTGCAGCTAGACCCTTTTCTCAATGAACTTACCAGCATGTTTGAGCGTAGCACCGAGAAGGGCTCTGTGTGGGTTACTCTGAAACGATGTATGTGTATATCAGCATTGTTAATTAGTTTCTTGAATCTTTTGTGGTATTCTTTAACTATATTGCATCTCATATTATTGTAGCATCACTGAAGTCTAAGGTGCAGAGAAATAAAATGACCACTGCCGGGCAACCTATTGAGTACAGGTGCCTCATCCGTGCAACTGATGGGAAGAAGACAATTTCTACTTCAGTGAGTATTGGCTCATCATTTAGTTCTTTTCTGGATTAAAAACTTTGCCCGAGCATTCAAGTTTTTCTAGTAAATTCTAAATTTACTCAGCTAAAGTTTCTTACCCATCCAAGTGGAGGATGCTGCGTTTAGACATCTTTTTATTTTATTTTATTTATGCTTTACACAAAGTTCATATTACAACTCAATGCATCCTGGGAGTGGGGTGATTATTAAAGAACTTCTGCTAGATTTTAGGAAATTAAGGACGGGCACAGTTCACTTTTCATTAATAAATTATCATTTAGTGTATGCCATCTTTTTTATGTGATGGCACTTGTATATTGTAGACATGATCAGTAATGAAGAAATAGAATTAGAACTCAAATTGAAATCTAGGCATTTAAGATTGACGTTTATTATACCATCTTGCTGCTCAATACTGAAGAAGTAATGTAGATTCCACTCCCTTCATCCCCCTCTCATTTCTTATTTTTCTTTTCTAGTCTCTGGAGCTTCGAATTATCTTTTATCCCATTCATTTCATTCTTCTTGGTAAACAGAAACCAAACCGCCGCATGTAGTCATTTCACATTCTTCAGATCTTATTATCTATGCTATCGTTTAAACTGCATTTAACCTAATCTTGATTCCCTTACATATTTACTCTTGGTCTGATTTTACCACCCTTGTGGAGGTTTCTAACTTTCTTGAATCTGAAGCATTTGTAACATTTGCTCTTAAAGGTTGGGGCAAAAGATCACCTGAAATTTCAAGCTTCCTATTCAACCATTCTTAAAGCCCACATGACTGCTCTTAAAAAGAGGGAGAGGAAGGAGAAGAAGAAGGCACCAGCGGCAGAGAAGGATCCCAAGAAAAAACCCAAGAAAGTA

mRNA sequence

GTTCTATTGCAGCTAGACCCTTTTCTCAATGAACTTACCAGCATGTTTGAGCGTAGCACCGAGAAGGGCTCTGTGTGGGTTACTCTGAAACGATCATCACTGAAGTCTAAGGTGCAGAGAAATAAAATGACCACTGCCGGGCAACCTATTGAGTACAGGTGCCTCATCCGTGCAACTGATGGGAAGAAGACAATTTCTACTTCAGTTGGGGCAAAAGATCACCTGAAATTTCAAGCTTCCTATTCAACCATTCTTAAAGCCCACATGACTGCTCTTAAAAAGAGGGAGAGGAAGGAGAAGAAGAAGGCACCAGCGGCAGAGAAGGATCCCAAGAAAAAACCCAAGAAAGTA

Coding sequence (CDS)

GTTCTATTGCAGCTAGACCCTTTTCTCAATGAACTTACCAGCATGTTTGAGCGTAGCACCGAGAAGGGCTCTGTGTGGGTTACTCTGAAACGATCATCACTGAAGTCTAAGGTGCAGAGAAATAAAATGACCACTGCCGGGCAACCTATTGAGTACAGGTGCCTCATCCGTGCAACTGATGGGAAGAAGACAATTTCTACTTCAGTTGGGGCAAAAGATCACCTGAAATTTCAAGCTTCCTATTCAACCATTCTTAAAGCCCACATGACTGCTCTTAAAAAGAGGGAGAGGAAGGAGAAGAAGAAGGCACCAGCGGCAGAGAAGGATCCCAAGAAAAAACCCAAGAAAGTA

Protein sequence

VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATDGKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEKDPKKKPKKV

Homology

[Close]

BLAST of MS013461.1 vs. NCBI nr
Match: XP_022140158.1 (signal recognition particle 14 kDa protein [Momordica charantia])

HSP 1 Score: 217.2 bits (552), Expect = 7.3e-53
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 60
           VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD
Sbjct: 2   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 61

Query: 61  GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEKDPKKKPKKV 118
           GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEKDPKKKPKKV
Sbjct: 62  GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEKDPKKKPKKV 118

[Close]

BLAST of MS013461.1 vs. NCBI nr
Match: XP_022954536.1 (signal recognition particle 14 kDa protein-like isoform X1 [Cucurbita moschata] >XP_022954537.1 signal recognition particle 14 kDa protein-like isoform X1 [Cucurbita moschata] >XP_022994924.1 signal recognition particle 14 kDa protein-like isoform X1 [Cucurbita maxima] >XP_022994925.1 signal recognition particle 14 kDa protein-like isoform X1 [Cucurbita maxima] >XP_023541199.1 signal recognition particle 14 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023541200.1 signal recognition particle 14 kDa protein-like [Cucurbita pepo subsp. pepo] >KAG6573374.1 Signal recognition particle 14 kDa protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012543.1 Signal recognition particle 14 kDa protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 207.6 bits (527), Expect = 5.8e-50
Identity = 111/117 (94.87%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 60
           VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD
Sbjct: 2   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 61

Query: 61  GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEKDPKKKPKKV 118
           GKKTISTSVGAKDHL+FQASYSTILKAHMTALKKRERK++KKAP AEKD KKKP+KV
Sbjct: 62  GKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRKV 118

[Close]

BLAST of MS013461.1 vs. NCBI nr
Match: XP_038893990.1 (signal recognition particle 14 kDa protein isoform X2 [Benincasa hispida])

HSP 1 Score: 205.3 bits (521), Expect = 2.9e-49
Identity = 111/117 (94.87%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 60
           VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD
Sbjct: 2   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 61

Query: 61  GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEKDPKKKPKKV 118
           GKKTISTSVGAKDHL+FQASYSTILKAHMTALKKRERK+KKKAP AEK  KKKP+KV
Sbjct: 62  GKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAPEAEKGLKKKPRKV 118

[Close]

BLAST of MS013461.1 vs. NCBI nr
Match: XP_038893989.1 (signal recognition particle 14 kDa protein isoform X1 [Benincasa hispida])

HSP 1 Score: 205.3 bits (521), Expect = 2.9e-49
Identity = 111/117 (94.87%), Postives = 114/117 (97.44%), Query Frame = 0


Query: 1   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 60
           VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD
Sbjct: 9   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 68

Query: 61  GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEKDPKKKPKKV 118
           GKKTISTSVGAKDHL+FQASYSTILKAHMTALKKRERK+KKKAP AEK  KKKP+KV
Sbjct: 69  GKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAPEAEKGLKKKPRKV 125

[Close]

BLAST of MS013461.1 vs. NCBI nr
Match: KGN66307.2 (hypothetical protein Csa_023187 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 2.4e-48
Identity = 110/117 (94.02%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 60
           VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD
Sbjct: 85  VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 144

Query: 61  GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEKDPKKKPKKV 118
           GKKTISTSVGAKDHL+FQASYSTILKAHMTALKKRERK+KKKA  AEK  KKKP+KV
Sbjct: 145 GKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 201

[Close]

BLAST of MS013461.1 vs. ExPASy Swiss-Prot
Match: O04421 (Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP14 PE=2 SV=2)

HSP 1 Score: 173.3 bits (438), Expect = 1.6e-42
Identity = 89/108 (82.41%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 60
           VLLQLDPFLNELTSMFE+S EKGSVWVTLKRSSLKSKVQ+ K+++ G+ IEYRCLIRATD
Sbjct: 2   VLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRATD 61

Query: 61  GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEK 109
           GKKT+STSVGAKDH +FQASY+TILKAHMTALKKRERK++KK+  AEK
Sbjct: 62  GKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEK 109

[Close]

BLAST of MS013461.1 vs. ExPASy Swiss-Prot
Match: O04433 (Signal recognition particle 14 kDa protein OS=Oryza sativa subsp. japonica OX=39947 GN=SRP14 PE=2 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.2e-36
Identity = 80/116 (68.97%), Postives = 98/116 (84.48%), Query Frame = 0


Query: 1   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 60
           V+LQ DPFL+ELTSM+ERSTEKGSVWVT+KRSS+K + +  KM   G+ +EYRCL+RATD
Sbjct: 2   VVLQPDPFLSELTSMYERSTEKGSVWVTMKRSSMKCQARLKKMAAKGEAVEYRCLVRATD 61

Query: 61  GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEKDPKKKPKK 117
           GKK I T++ AK++LKFQASY+T+LKAHM ALKKRERK+KKKA   EK P+K PKK
Sbjct: 62  GKKNICTALSAKEYLKFQASYATVLKAHMHALKKRERKDKKKAAEVEKIPEKAPKK 117

[Close]

BLAST of MS013461.1 vs. ExPASy Swiss-Prot
Match: P37108 (Signal recognition particle 14 kDa protein OS=Homo sapiens OX=9606 GN=SRP14 PE=1 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 8.8e-17
Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAG-QPIEYRCLIRAT 60
           VLL+ + FL ELT +F++    GSV++TLK+   ++K    K T  G +P + +CL+RAT
Sbjct: 2   VLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRAT 61

Query: 61  DGKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAA 107
           DGKK IST V +K+  KFQ +YS +L+A+M  LKKR++K K K   A
Sbjct: 62  DGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKA 108

[Close]

BLAST of MS013461.1 vs. ExPASy Swiss-Prot
Match: Q4R5C7 (Signal recognition particle 14 kDa protein OS=Macaca fascicularis OX=9541 GN=SRP14 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.8e-17
Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAG-QPIEYRCLIRAT 60
           VLL+ + FL ELT +F++    GSV++TLK+   ++K    K T  G +P + +CL+RAT
Sbjct: 2   VLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRAT 61

Query: 61  DGKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAA 107
           DGKK IST V +K+  KFQ +YS +L+A+M  LKKR++K K K   A
Sbjct: 62  DGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKA 108

[Close]

BLAST of MS013461.1 vs. ExPASy Swiss-Prot
Match: Q5RBX7 (Signal recognition particle 14 kDa protein OS=Pongo abelii OX=9601 GN=SRP14 PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 8.8e-17
Identity = 50/107 (46.73%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 1   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAG-QPIEYRCLIRAT 60
           VLL+ + FL ELT +F++    GSV++TLK+   ++K    K T  G +P + +CL+RAT
Sbjct: 2   VLLESEQFLTELTRLFQKCRTSGSVYITLKKYDGRTKPIPKKGTVEGFEPADNKCLLRAT 61

Query: 61  DGKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAA 107
           DGKK IST V +K+  KFQ +YS +L+A+M  LKKR++K K K   A
Sbjct: 62  DGKKKISTVVSSKEVNKFQMAYSNLLRANMDGLKKRDKKNKTKKTKA 108

[Close]

BLAST of MS013461.1 vs. ExPASy TrEMBL
Match: A0A6J1CHD5 (signal recognition particle 14 kDa protein OS=Momordica charantia OX=3673 GN=LOC111010890 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.5e-53
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 60
           VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD
Sbjct: 2   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 61

Query: 61  GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEKDPKKKPKKV 118
           GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEKDPKKKPKKV
Sbjct: 62  GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEKDPKKKPKKV 118

[Close]

BLAST of MS013461.1 vs. ExPASy TrEMBL
Match: A0A6J1K2P1 (signal recognition particle 14 kDa protein-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490504 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.8e-50
Identity = 111/117 (94.87%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 60
           VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD
Sbjct: 2   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 61

Query: 61  GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEKDPKKKPKKV 118
           GKKTISTSVGAKDHL+FQASYSTILKAHMTALKKRERK++KKAP AEKD KKKP+KV
Sbjct: 62  GKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRKV 118

[Close]

BLAST of MS013461.1 vs. ExPASy TrEMBL
Match: A0A6J1GR82 (signal recognition particle 14 kDa protein-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456777 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.8e-50
Identity = 111/117 (94.87%), Postives = 115/117 (98.29%), Query Frame = 0


Query: 1   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 60
           VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD
Sbjct: 2   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 61

Query: 61  GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEKDPKKKPKKV 118
           GKKTISTSVGAKDHL+FQASYSTILKAHMTALKKRERK++KKAP AEKD KKKP+KV
Sbjct: 62  GKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDRKKAPEAEKDSKKKPRKV 118

[Close]

BLAST of MS013461.1 vs. ExPASy TrEMBL
Match: A0A6J1KGP7 (signal recognition particle 14 kDa protein-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495612 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 110/117 (94.02%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 60
           VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD
Sbjct: 2   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 61

Query: 61  GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEKDPKKKPKKV 118
           GKKTISTSVGAKDHL+FQASYSTILKAHMTALKKRERK+KKKA  AEK  KKKP+KV
Sbjct: 62  GKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 118

[Close]

BLAST of MS013461.1 vs. ExPASy TrEMBL
Match: A0A5A7UG42 (Signal recognition particle 14 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00850 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 110/117 (94.02%), Postives = 113/117 (96.58%), Query Frame = 0


Query: 1   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 60
           VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD
Sbjct: 7   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 66

Query: 61  GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEKDPKKKPKKV 118
           GKKTISTSVGAKDHL+FQASYSTILKAHMTALKKRERK+KKKA  AEK  KKKP+KV
Sbjct: 67  GKKTISTSVGAKDHLRFQASYSTILKAHMTALKKRERKDKKKAAEAEKGLKKKPRKV 123

[Close]

BLAST of MS013461.1 vs. TAIR 10
Match: AT2G43640.1 (Signal recognition particle, SRP9/SRP14 subunit )

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-43
Identity = 89/108 (82.41%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 60
           VLLQLDPFLNELTSMFE+S EKGSVWVTLKRSSLKSKVQ+ K+++ G+ IEYRCLIRATD
Sbjct: 2   VLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRATD 61

Query: 61  GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEK 109
           GKKT+STSVGAKDH +FQASY+TILKAHMTALKKRERK++KK+  AEK
Sbjct: 62  GKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEK 109

[Close]

BLAST of MS013461.1 vs. TAIR 10
Match: AT2G43640.2 (Signal recognition particle, SRP9/SRP14 subunit )

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-43
Identity = 89/108 (82.41%), Postives = 101/108 (93.52%), Query Frame = 0


Query: 1   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 60
           VLLQLDPFLNELTSMFE+S EKGSVWVTLKRSSLKSKVQ+ K+++ G+ IEYRCLIRATD
Sbjct: 2   VLLQLDPFLNELTSMFEKSKEKGSVWVTLKRSSLKSKVQKRKLSSVGESIEYRCLIRATD 61

Query: 61  GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEK 109
           GKKT+STSVGAKDH +FQASY+TILKAHMTALKKRERK++KK+  AEK
Sbjct: 62  GKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEK 109

[Close]

BLAST of MS013461.1 vs. TAIR 10
Match: AT2G43640.3 (Signal recognition particle, SRP9/SRP14 subunit )

HSP 1 Score: 146.4 bits (368), Expect = 1.5e-35
Identity = 79/108 (73.15%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   VLLQLDPFLNELTSMFERSTEKGSVWVTLKRSSLKSKVQRNKMTTAGQPIEYRCLIRATD 60
           VLLQLDPFLNELTSMFE+S EK         +SLKSKVQ+ K+++ G+ IEYRCLIRATD
Sbjct: 2   VLLQLDPFLNELTSMFEKSKEK---------ASLKSKVQKRKLSSVGESIEYRCLIRATD 61

Query: 61  GKKTISTSVGAKDHLKFQASYSTILKAHMTALKKRERKEKKKAPAAEK 109
           GKKT+STSVGAKDH +FQASY+TILKAHMTALKKRERK++KK+  AEK
Sbjct: 62  GKKTVSTSVGAKDHQRFQASYATILKAHMTALKKRERKDRKKSTEAEK 100

The following BLAST results are available for this feature:

BLAST of MS013461.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140158.1	7.3e-53	100.00	signal recognition particle 14 kDa protein [Momordica charantia]	[more]
XP_022954536.1	5.8e-50	94.87	signal recognition particle 14 kDa protein-like isoform X1 [Cucurbita moschata] ...	[more]
XP_038893990.1	2.9e-49	94.87	signal recognition particle 14 kDa protein isoform X2 [Benincasa hispida]	[more]
XP_038893989.1	2.9e-49	94.87	signal recognition particle 14 kDa protein isoform X1 [Benincasa hispida]	[more]
KGN66307.2	2.4e-48	94.02	hypothetical protein Csa_023187 [Cucumis sativus]	[more]

BLAST of MS013461.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04421	1.6e-42	82.41	Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
O04433	2.2e-36	68.97	Signal recognition particle 14 kDa protein OS=Oryza sativa subsp. japonica OX=39...	[more]
P37108	8.8e-17	46.73	Signal recognition particle 14 kDa protein OS=Homo sapiens OX=9606 GN=SRP14 PE=1...	[more]
Q4R5C7	8.8e-17	46.73	Signal recognition particle 14 kDa protein OS=Macaca fascicularis OX=9541 GN=SRP...	[more]
Q5RBX7	8.8e-17	46.73	Signal recognition particle 14 kDa protein OS=Pongo abelii OX=9601 GN=SRP14 PE=2...	[more]

BLAST of MS013461.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHD5	3.5e-53	100.00	signal recognition particle 14 kDa protein OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1K2P1	2.8e-50	94.87	signal recognition particle 14 kDa protein-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1GR82	2.8e-50	94.87	signal recognition particle 14 kDa protein-like isoform X1 OS=Cucurbita moschata...	[more]
A0A6J1KGP7	1.2e-48	94.02	signal recognition particle 14 kDa protein-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A5A7UG42	1.2e-48	94.02	Signal recognition particle 14 kDa protein OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of MS013461.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G43640.1	1.1e-43	82.41	Signal recognition particle, SRP9/SRP14 subunit	[more]
AT2G43640.2	1.1e-43	82.41	Signal recognition particle, SRP9/SRP14 subunit	[more]
AT2G43640.3	1.5e-35	73.15	Signal recognition particle, SRP9/SRP14 subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003210	Signal recognition particle, SRP14 subunit	PFAM	PF02290	SRP14	coord: 3..92 e-value: 6.5E-23 score: 81.1
IPR003210	Signal recognition particle, SRP14 subunit	PANTHER	PTHR12013	SIGNAL RECOGNITION PARTICLE 14 KD PROTEIN	coord: 1..116
IPR009018	Signal recognition particle, SRP9/SRP14 subunit	GENE3D	3.30.720.10	Signal recognition particle alu RNA binding heterodimer, srp9/1	coord: 1..117 e-value: 2.0E-38 score: 133.9
IPR009018	Signal recognition particle, SRP9/SRP14 subunit	SUPERFAMILY	54762	Signal recognition particle alu RNA binding heterodimer, SRP9/14	coord: 1..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..117
None	No IPR available	PANTHER	PTHR12013:SF3	SUBFAMILY NOT NAMED	coord: 1..116

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS013461	MS013461	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS013461.1-cds	MS013461.1-cds-scaffold402:1704021..1704167	CDS
MS013461.1-cds	MS013461.1-cds-scaffold402:1704893..1705002	CDS
MS013461.1-cds	MS013461.1-cds-scaffold402:1705086..1705179	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS013461.1	MS013461.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
cellular_component	GO:0048500	signal recognition particle
cellular_component	GO:0005786	signal recognition particle, endoplasmic reticulum targeting
molecular_function	GO:0008312	7S RNA binding
molecular_function	GO:0030942	endoplasmic reticulum signal peptide binding