MS012610.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS012610.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	classical arabinogalactan protein 9-like
Location	scaffold63: 2028894 .. 2029235 (-)
Sequence length	342
RNA-Seq Expression	MS012610.1
Synteny	MS012610.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCACCACCTGCCACTCCACCACCGGCGGCGACCCCACCGGCCACCCCACCACCGGCGGCGACCCCACCTCCATCATCACCGCCGAGCCAACCTCCGTCACCGCCGCCGTCTGCACCCAACTCCTCTCCCACTCCGCCACCAAAGGAGGGTCCCGCCGTATCTCCGACTCCATCCTCCGCCTCACCACCGGCACCGCCCCCGGGCCCCACTTCCGGCCCGGCCGCCGGCCCGTCACCTAACATGCCACCACCCCCACCGGAAGGAAATGGTGCGGCCACCATTAGCCGGGCAGTCATGGCCGGCGGTGCGGTGGCCGGAGCTTTCTTGGCGGTGGTGTTCGCT

mRNA sequence

CCACCACCTGCCACTCCACCACCGGCGGCGACCCCACCGGCCACCCCACCACCGGCGGCGACCCCACCTCCATCATCACCGCCGAGCCAACCTCCGTCACCGCCGCCGTCTGCACCCAACTCCTCTCCCACTCCGCCACCAAAGGAGGGTCCCGCCGTATCTCCGACTCCATCCTCCGCCTCACCACCGGCACCGCCCCCGGGCCCCACTTCCGGCCCGGCCGCCGGCCCGTCACCTAACATGCCACCACCCCCACCGGAAGGAAATGGTGCGGCCACCATTAGCCGGGCAGTCATGGCCGGCGGTGCGGTGGCCGGAGCTTTCTTGGCGGTGGTGTTCGCT

Coding sequence (CDS)

CCACCACCTGCCACTCCACCACCGGCGGCGACCCCACCGGCCACCCCACCACCGGCGGCGACCCCACCTCCATCATCACCGCCGAGCCAACCTCCGTCACCGCCGCCGTCTGCACCCAACTCCTCTCCCACTCCGCCACCAAAGGAGGGTCCCGCCGTATCTCCGACTCCATCCTCCGCCTCACCACCGGCACCGCCCCCGGGCCCCACTTCCGGCCCGGCCGCCGGCCCGTCACCTAACATGCCACCACCCCCACCGGAAGGAAATGGTGCGGCCACCATTAGCCGGGCAGTCATGGCCGGCGGTGCGGTGGCCGGAGCTTTCTTGGCGGTGGTGTTCGCT

Protein sequence

PPPATPPPAATPPATPPPAATPPPSSPPSQPPSPPPSAPNSSPTPPPKEGPAVSPTPSSASPPAPPPGPTSGPAAGPSPNMPPPPPEGNGAATISRAVMAGGAVAGAFLAVVFA

Homology

[Close]

BLAST of MS012610.1 vs. NCBI nr
Match: XP_022929543.1 (classical arabinogalactan protein 9-like [Cucurbita moschata] >KAG6577317.1 hypothetical protein SDJN03_24891, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.8 bits (268), Expect = 6.1e-20
Identity = 85/113 (75.22%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 3   PATPPPAAT-PPATPPPAATPPPSSPPSQPPSPPPSAPNSSPTPPPKEGPAVSPTPSSAS 62
           PATPPPAAT PPATPPPA TPPPS PPS PP+ PP++P +SPTPPPKEGPA SPTPSSAS
Sbjct: 48  PATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSAS 107

Query: 63  PPAPPPGPTSGPAAGPSPNMPPPPPEGNGAATISRAVMAGGAVAGAFLAVVFA 115
           PP+ PP    GP+A P PN PPPPP  NGAAT+SR VM GGAVAGA LA+VFA
Sbjct: 108 PPS-PPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159

[Close]

BLAST of MS012610.1 vs. NCBI nr
Match: XP_022984561.1 (classical arabinogalactan protein 4-like [Cucurbita maxima])

HSP 1 Score: 104.4 bits (259), Expect = 6.7e-19
Identity = 84/113 (74.34%), Postives = 92/113 (81.42%), Query Frame = 0


Query: 3   PATPPPAAT-PPATPPPAATPPPSSPPSQPPSPPPSAPNSSPTPPPKEGPAVSPTPSSAS 62
           PATPPPAAT PPATPPPA TPPPS PPS PP+ PP++P +SPTPPPKEGPA SPTPSSAS
Sbjct: 48  PATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSAS 107

Query: 63  PPAPPPGPTSGPAAGPSPNMPPPPPEGNGAATISRAVMAGGAVAGAFLAVVFA 115
           PP+ PP     P+A P PN PPPPP  NGAAT+SR VM GGAVAGA LA+VFA
Sbjct: 108 PPS-PPSEGMVPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159

[Close]

BLAST of MS012610.1 vs. NCBI nr
Match: XP_023552891.1 (classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.0 bits (258), Expect = 8.8e-19
Identity = 81/112 (72.32%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 3   PATPPPAATPPATPPPAATPPPSSPPSQPPSPPPSAPNSSPTPPPKEGPAVSPTPSSASP 62
           PATPPPAATPP   PPA TPPP+ PPS PP+ PP++P +SPTPPPKEGPA SPTPSSASP
Sbjct: 40  PATPPPAATPPPATPPAMTPPPTQPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSASP 99

Query: 63  PAPPPGPTSGPAAGPSPNMPPPPPEGNGAATISRAVMAGGAVAGAFLAVVFA 115
           P+ PP    GP+A P PN PPPPP  NGAAT+SR VM GGAVAGA LA+VFA
Sbjct: 100 PS-PPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 150

[Close]

BLAST of MS012610.1 vs. NCBI nr
Match: TYK14854.1 (vegetative cell wall protein gp1 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 7.7e-15
Identity = 85/122 (69.67%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 1   PPPATPPPAATPPATPPPAATPPPSSPPSQPP-----SPPPSAPNSSPTPPPKEGPAVSP 60
           PPPATPPPA  PPATPPPA+T PPSSPPSQPP     SPPPS+P+S PT PPKEGP   P
Sbjct: 53  PPPATPPPATPPPATPPPAST-PPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPP 112

Query: 61  TPSSASPPAPPPG---PTSGPAAGPSPNMPPPPPEGNGAATISRAVMAGGAVAGAFLAVV 115
           T   +SPP+PPP    PTS P  GPSP  PPPPPEGNGAA++SR +M GGAVAGAFLA++
Sbjct: 113 T---SSPPSPPPEGNVPTSSP--GPSP--PPPPPEGNGAASVSRGMMVGGAVAGAFLAMI 166

[Close]

BLAST of MS012610.1 vs. NCBI nr
Match: XP_008455676.1 (PREDICTED: vegetative cell wall protein gp1 [Cucumis melo])

HSP 1 Score: 90.9 bits (224), Expect = 7.7e-15
Identity = 85/122 (69.67%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 1   PPPATPPPAATPPATPPPAATPPPSSPPSQPP-----SPPPSAPNSSPTPPPKEGPAVSP 60
           PPPATPPPA  PPATPPPA+T PPSSPPSQPP     SPPPS+P+S PT PPKEGP   P
Sbjct: 51  PPPATPPPATPPPATPPPAST-PPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPP 110

Query: 61  TPSSASPPAPPPG---PTSGPAAGPSPNMPPPPPEGNGAATISRAVMAGGAVAGAFLAVV 115
           T   +SPP+PPP    PTS P  GPSP  PPPPPEGNGAA++SR +M GGAVAGAFLA++
Sbjct: 111 T---SSPPSPPPEGNVPTSSP--GPSP--PPPPPEGNGAASVSRGMMVGGAVAGAFLAMI 164

[Close]

BLAST of MS012610.1 vs. ExPASy TrEMBL
Match: A0A6J1ESF0 (classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111436080 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.0e-20
Identity = 85/113 (75.22%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 3   PATPPPAAT-PPATPPPAATPPPSSPPSQPPSPPPSAPNSSPTPPPKEGPAVSPTPSSAS 62
           PATPPPAAT PPATPPPA TPPPS PPS PP+ PP++P +SPTPPPKEGPA SPTPSSAS
Sbjct: 48  PATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSAS 107

Query: 63  PPAPPPGPTSGPAAGPSPNMPPPPPEGNGAATISRAVMAGGAVAGAFLAVVFA 115
           PP+ PP    GP+A P PN PPPPP  NGAAT+SR VM GGAVAGA LA+VFA
Sbjct: 108 PPS-PPSEGMGPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159

[Close]

BLAST of MS012610.1 vs. ExPASy TrEMBL
Match: A0A6J1J5L5 (classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111482820 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 3.3e-19
Identity = 84/113 (74.34%), Postives = 92/113 (81.42%), Query Frame = 0


Query: 3   PATPPPAAT-PPATPPPAATPPPSSPPSQPPSPPPSAPNSSPTPPPKEGPAVSPTPSSAS 62
           PATPPPAAT PPATPPPA TPPPS PPS PP+ PP++P +SPTPPPKEGPA SPTPSSAS
Sbjct: 48  PATPPPAATPPPATPPPAVTPPPSQPPSSPPTQPPASPPTSPTPPPKEGPASSPTPSSAS 107

Query: 63  PPAPPPGPTSGPAAGPSPNMPPPPPEGNGAATISRAVMAGGAVAGAFLAVVFA 115
           PP+ PP     P+A P PN PPPPP  NGAAT+SR VM GGAVAGA LA+VFA
Sbjct: 108 PPS-PPSEGMVPSASPGPNSPPPPPGDNGAATVSRGVMVGGAVAGALLAMVFA 159

[Close]

BLAST of MS012610.1 vs. ExPASy TrEMBL
Match: A0A5D3CV77 (Vegetative cell wall protein gp1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold461G00250 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.7e-15
Identity = 85/122 (69.67%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 1   PPPATPPPAATPPATPPPAATPPPSSPPSQPP-----SPPPSAPNSSPTPPPKEGPAVSP 60
           PPPATPPPA  PPATPPPA+T PPSSPPSQPP     SPPPS+P+S PT PPKEGP   P
Sbjct: 53  PPPATPPPATPPPATPPPAST-PPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPP 112

Query: 61  TPSSASPPAPPPG---PTSGPAAGPSPNMPPPPPEGNGAATISRAVMAGGAVAGAFLAVV 115
           T   +SPP+PPP    PTS P  GPSP  PPPPPEGNGAA++SR +M GGAVAGAFLA++
Sbjct: 113 T---SSPPSPPPEGNVPTSSP--GPSP--PPPPPEGNGAASVSRGMMVGGAVAGAFLAMI 166

[Close]

BLAST of MS012610.1 vs. ExPASy TrEMBL
Match: A0A1S3C1K1 (vegetative cell wall protein gp1 OS=Cucumis melo OX=3656 GN=LOC103495791 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.7e-15
Identity = 85/122 (69.67%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 1   PPPATPPPAATPPATPPPAATPPPSSPPSQPP-----SPPPSAPNSSPTPPPKEGPAVSP 60
           PPPATPPPA  PPATPPPA+T PPSSPPSQPP     SPPPS+P+S PT PPKEGP   P
Sbjct: 51  PPPATPPPATPPPATPPPAST-PPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPP 110

Query: 61  TPSSASPPAPPPG---PTSGPAAGPSPNMPPPPPEGNGAATISRAVMAGGAVAGAFLAVV 115
           T   +SPP+PPP    PTS P  GPSP  PPPPPEGNGAA++SR +M GGAVAGAFLA++
Sbjct: 111 T---SSPPSPPPEGNVPTSSP--GPSP--PPPPPEGNGAASVSRGMMVGGAVAGAFLAMI 164

[Close]

BLAST of MS012610.1 vs. ExPASy TrEMBL
Match: A0A0A0L0L1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G098710 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 6.4e-15
Identity = 85/122 (69.67%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 1   PPPATPPPAATPPATPPPAATPPPSSPPSQPP-----SPPPSAPNSSPTPPPKEGPAVSP 60
           PPPATPPPA  PPATPPPA+T PPSSPPSQPP     SPPPS+P+S PT PPKEGP   P
Sbjct: 53  PPPATPPPATPPPATPPPAST-PPSSPPSQPPASPPTSPPPSSPSSPPTAPPKEGPISPP 112

Query: 61  TPSSASPPAPPPG---PTSGPAAGPSPNMPPPPPEGNGAATISRAVMAGGAVAGAFLAVV 115
           T   +SPP+PPP    PT+ P  GPSP  PPPPPEGNGAA++SR +M GGAVAGAFLA+V
Sbjct: 113 T---SSPPSPPPEGNVPTNSP--GPSP--PPPPPEGNGAASVSRGMMVGGAVAGAFLAMV 166

The following BLAST results are available for this feature:

BLAST of MS012610.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929543.1	6.1e-20	75.22	classical arabinogalactan protein 9-like [Cucurbita moschata] >KAG6577317.1 hypo...	[more]
XP_022984561.1	6.7e-19	74.34	classical arabinogalactan protein 4-like [Cucurbita maxima]	[more]
XP_023552891.1	8.8e-19	72.32	classical arabinogalactan protein 9-like [Cucurbita pepo subsp. pepo]	[more]
TYK14854.1	7.7e-15	69.67	vegetative cell wall protein gp1 [Cucumis melo var. makuwa]	[more]
XP_008455676.1	7.7e-15	69.67	PREDICTED: vegetative cell wall protein gp1 [Cucumis melo]	[more]

BLAST of MS012610.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS012610.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ESF0	3.0e-20	75.22	classical arabinogalactan protein 9-like OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1J5L5	3.3e-19	74.34	classical arabinogalactan protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A5D3CV77	3.7e-15	69.67	Vegetative cell wall protein gp1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3C1K1	3.7e-15	69.67	vegetative cell wall protein gp1 OS=Cucumis melo OX=3656 GN=LOC103495791 PE=4 SV...	[more]
A0A0A0L0L1	6.4e-15	69.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G098710 PE=4 SV=1	[more]

BLAST of MS012610.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..89

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS012610	MS012610	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS012610.1-cds	MS012610.1-cds-scaffold63:2028894..2029235	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS012610.1	MS012610.1-protein	polypeptide