MS012198.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS012198.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	zinc finger protein 4-like
Location	scaffold797: 371256 .. 371876 (-)
Sequence length	621
RNA-Seq Expression	MS012198.1
Synteny	MS012198.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGAGGGGGGAGAAGAAACAGCTGAATTAACAGCTACCCAGAAGCCAGGTGAATCAAATTCCACCAAAAACAACAGAAATGAATCAATGGAGTGTGAAAGTCCAGCAGAAGGGTGGCTGGATCTGAGCTTGGGTGGGAATTTGCAGGCCCCAAATGGGGCAGATTCTGAGCCACAGCCATTGATGAACAAGCCAAGTAATTTAGCTCCAAAGGTCTTCTCCTGTAACTTCTGTATGAGGAAATTCTACAGCTCTCAGGCATTGGGTGGCCACCAAAATGCCCACAAAAGGGAGAGAGGAGCAGTTAGAAGATACAAATTTCAGAGAATAATGGCGATGATGGGTCTGCCATTGCCATTAATGAATAATGCTGCTAATTTAATGGTTCGGTCGCTGAGTGTAAGGCCCCACTCACTCGGCCATAGCCATGGAGGATCTTCTGCTGCCGCCACCACTGCCGCAAGGTTCGACGGCGACGGCGGCGGCGGTGAGAGGTTAAAGATGGCCGCCGCCGCCATATTGGGAGAAGAGCTGATGGACATGGGATGGCCAGGGAGCTTCCGATTCAACAGCCAACAGGAAACAGAGCCACTGAAGCTGGACTTGAATCTTAGGCTT

mRNA sequence

ATGACAGAGGGGGGAGAAGAAACAGCTGAATTAACAGCTACCCAGAAGCCAGGTGAATCAAATTCCACCAAAAACAACAGAAATGAATCAATGGAGTGTGAAAGTCCAGCAGAAGGGTGGCTGGATCTGAGCTTGGGTGGGAATTTGCAGGCCCCAAATGGGGCAGATTCTGAGCCACAGCCATTGATGAACAAGCCAAGTAATTTAGCTCCAAAGGTCTTCTCCTGTAACTTCTGTATGAGGAAATTCTACAGCTCTCAGGCATTGGGTGGCCACCAAAATGCCCACAAAAGGGAGAGAGGAGCAGTTAGAAGATACAAATTTCAGAGAATAATGGCGATGATGGGTCTGCCATTGCCATTAATGAATAATGCTGCTAATTTAATGGTTCGGTCGCTGAGTGTAAGGCCCCACTCACTCGGCCATAGCCATGGAGGATCTTCTGCTGCCGCCACCACTGCCGCAAGGTTCGACGGCGACGGCGGCGGCGGTGAGAGGTTAAAGATGGCCGCCGCCGCCATATTGGGAGAAGAGCTGATGGACATGGGATGGCCAGGGAGCTTCCGATTCAACAGCCAACAGGAAACAGAGCCACTGAAGCTGGACTTGAATCTTAGGCTT

Coding sequence (CDS)

ATGACAGAGGGGGGAGAAGAAACAGCTGAATTAACAGCTACCCAGAAGCCAGGTGAATCAAATTCCACCAAAAACAACAGAAATGAATCAATGGAGTGTGAAAGTCCAGCAGAAGGGTGGCTGGATCTGAGCTTGGGTGGGAATTTGCAGGCCCCAAATGGGGCAGATTCTGAGCCACAGCCATTGATGAACAAGCCAAGTAATTTAGCTCCAAAGGTCTTCTCCTGTAACTTCTGTATGAGGAAATTCTACAGCTCTCAGGCATTGGGTGGCCACCAAAATGCCCACAAAAGGGAGAGAGGAGCAGTTAGAAGATACAAATTTCAGAGAATAATGGCGATGATGGGTCTGCCATTGCCATTAATGAATAATGCTGCTAATTTAATGGTTCGGTCGCTGAGTGTAAGGCCCCACTCACTCGGCCATAGCCATGGAGGATCTTCTGCTGCCGCCACCACTGCCGCAAGGTTCGACGGCGACGGCGGCGGCGGTGAGAGGTTAAAGATGGCCGCCGCCGCCATATTGGGAGAAGAGCTGATGGACATGGGATGGCCAGGGAGCTTCCGATTCAACAGCCAACAGGAAACAGAGCCACTGAAGCTGGACTTGAATCTTAGGCTT

Protein sequence

MTEGGEETAELTATQKPGESNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGADSEPQPLMNKPSNLAPKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMGLPLPLMNNAANLMVRSLSVRPHSLGHSHGGSSAAATTAARFDGDGGGGERLKMAAAAILGEELMDMGWPGSFRFNSQQETEPLKLDLNLRL

Homology

[Close]

BLAST of MS012198.1 vs. NCBI nr
Match: XP_022148804.1 (zinc finger protein 4-like [Momordica charantia] >XP_022148805.1 zinc finger protein 4-like [Momordica charantia])

HSP 1 Score: 409.1 bits (1050), Expect = 2.3e-110
Identity = 206/207 (99.52%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MTEGGEETAELTATQKPGESNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGADSEPQ 60
           MTEGGEETAELTATQKPGESNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGADSEPQ
Sbjct: 1   MTEGGEETAELTATQKPGESNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGADSEPQ 60

Query: 61  PLMNKPSNLAPKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMGLPLP 120
           PLMNKPSNLAPKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMGLPLP
Sbjct: 61  PLMNKPSNLAPKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMGLPLP 120

Query: 121 LMNNAANLMVRSLSVRPHSLGHSHGGSSAAATTAARFDGDGGGGERLKMAAAAILGEELM 180
           LMNNAANLMVRSLSVRPHSLGHSHGGSSAAATTAARFDGDGGGG+RLKMAAAAILGEELM
Sbjct: 121 LMNNAANLMVRSLSVRPHSLGHSHGGSSAAATTAARFDGDGGGGKRLKMAAAAILGEELM 180

Query: 181 DMGWPGSFRFNSQQETEPLKLDLNLRL 208
           DMGWPGSFRFNSQQETEPLKLDLNLRL
Sbjct: 181 DMGWPGSFRFNSQQETEPLKLDLNLRL 207

[Close]

BLAST of MS012198.1 vs. NCBI nr
Match: KAG6571937.1 (Zinc finger protein 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 241.5 bits (615), Expect = 6.4e-60
Identity = 145/224 (64.73%), Postives = 161/224 (71.88%), Query Frame = 0


Query: 3   EGGEETAELTA-TQKPGESNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGA-DSEPQ 62
           E  EE AELTA TQKPGES+ T+ NRNES   E+PA GWL+LSLGGNLQ  NG  DS+ Q
Sbjct: 2   EDREEAAELTATTQKPGESSPTRINRNESTANENPARGWLNLSLGGNLQPSNGTDDSDSQ 61

Query: 63  PLMNKPSN----LAPKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMG 122
           PLMNKPS+       K+FSCN+CMRKFYSSQALGGHQNAHKRERGA RRY+FQ+IMAMMG
Sbjct: 62  PLMNKPSSSSAAATAKMFSCNYCMRKFYSSQALGGHQNAHKRERGAARRYQFQKIMAMMG 121

Query: 123 LPLPLMNNAANLMVRSLSVRPHSL--------GHSHGGSSAAATTAARFDGDGGGGERLK 182
           LP PLMNNAAN MVRSL VRPHSL           HGGSSA   T ARF      G    
Sbjct: 122 LP-PLMNNAANFMVRSLGVRPHSLLLQRPNREPLGHGGSSA---TVARF-----YGAATS 181

Query: 183 MAAAAILGEELMDMGWPGSFRFNSQQET-----EPLKLDLNLRL 208
            AAA  L ++ MD+ WPGSFR N+QQ+T     EPLKLDLNL+L
Sbjct: 182 AAAACTLEDDFMDITWPGSFRLNTQQQTEPPMSEPLKLDLNLKL 216

[Close]

BLAST of MS012198.1 vs. NCBI nr
Match: KAG7011625.1 (Zinc finger protein 7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 241.1 bits (614), Expect = 8.4e-60
Identity = 144/221 (65.16%), Postives = 160/221 (72.40%), Query Frame = 0


Query: 6   EETAELTA-TQKPGESNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGA-DSEPQPLM 65
           EE AELTA TQKPGES+ T+ NRNES   E+PA GWL+LSLGGNLQ  NG  DS+ QPLM
Sbjct: 112 EEAAELTATTQKPGESSPTRINRNESTANENPARGWLNLSLGGNLQPSNGTDDSDSQPLM 171

Query: 66  NKPSN----LAPKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMGLPL 125
           NKPS+       K+FSCN+CMRKFYSSQALGGHQNAHKRERGA RRY+FQ+IMAMMGLP 
Sbjct: 172 NKPSSSSAAATAKMFSCNYCMRKFYSSQALGGHQNAHKRERGAARRYQFQKIMAMMGLP- 231

Query: 126 PLMNNAANLMVRSLSVRPHSL--------GHSHGGSSAAATTAARFDGDGGGGERLKMAA 185
           PLMNNAAN MVRSL VRPHSL           HGGSSA   T ARF      G     AA
Sbjct: 232 PLMNNAANFMVRSLGVRPHSLLLQRPNREPLGHGGSSA---TVARF-----YGAATSAAA 291

Query: 186 AAILGEELMDMGWPGSFRFNSQQET-----EPLKLDLNLRL 208
           A  L ++ MD+ WPGSFR N+QQ+T     EPLKLDLNL+L
Sbjct: 292 ACTLEDDFMDITWPGSFRLNTQQQTEPPMSEPLKLDLNLKL 323

[Close]

BLAST of MS012198.1 vs. NCBI nr
Match: XP_022952416.1 (zinc finger protein 4-like [Cucurbita moschata] >XP_022952417.1 zinc finger protein 4-like [Cucurbita moschata] >XP_022952418.1 zinc finger protein 4-like [Cucurbita moschata])

HSP 1 Score: 239.6 bits (610), Expect = 2.4e-59
Identity = 145/224 (64.73%), Postives = 161/224 (71.88%), Query Frame = 0


Query: 3   EGGEETAELTA-TQKPGESNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGA-DSEPQ 62
           E  EE AELTA TQKPGES+ T+ NRNES   E+PA GWL+LSLGGNLQ  NG  DS+ Q
Sbjct: 2   EDREEAAELTATTQKPGESSPTRINRNESTANENPARGWLNLSLGGNLQPCNGTDDSDSQ 61

Query: 63  PLMNKPSN----LAPKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMG 122
           PLMNKPS+       K+FSCN+CMRKFYSSQALGGHQNAHKRERGA RRY+FQ+IMAMMG
Sbjct: 62  PLMNKPSSSSAAATAKMFSCNYCMRKFYSSQALGGHQNAHKRERGAARRYQFQKIMAMMG 121

Query: 123 LPLPLMNNAANLMVRSLSVRPHSL--------GHSHGGSSAAATTAARFDGDGGGGERLK 182
           LP PLMNNAAN MVRSL VRPHSL           HGGSSA   T ARF G         
Sbjct: 122 LP-PLMNNAANFMVRSLGVRPHSLLLQRPNREPLGHGGSSA---TVARFYG-AATSASAS 181

Query: 183 MAAAAILGEELMDMGWPGSFRFNSQQET-----EPLKLDLNLRL 208
            AAA  L ++ MD+ WPGSFR N+QQ+T     EPLKLDLNL+L
Sbjct: 182 AAAACTLEDDFMDITWPGSFRLNTQQQTEPPMSEPLKLDLNLKL 220

[Close]

BLAST of MS012198.1 vs. NCBI nr
Match: XP_022972416.1 (zinc finger protein 4-like [Cucurbita maxima] >XP_022972417.1 zinc finger protein 4-like [Cucurbita maxima] >XP_022972418.1 zinc finger protein 4-like [Cucurbita maxima] >XP_022972419.1 zinc finger protein 4-like [Cucurbita maxima] >XP_022972420.1 zinc finger protein 4-like [Cucurbita maxima])

HSP 1 Score: 238.0 bits (606), Expect = 7.1e-59
Identity = 144/224 (64.29%), Postives = 160/224 (71.43%), Query Frame = 0


Query: 3   EGGEETAELTA-TQKPGESNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGA-DSEPQ 62
           E  EE AELTA TQKP ES+ T+ NRNES   E+PA GWL+LSLGGNLQ  NG  DS+ Q
Sbjct: 2   EDREEAAELTATTQKPSESSPTRINRNESTANENPARGWLNLSLGGNLQPSNGTNDSDSQ 61

Query: 63  PLMNKPSN----LAPKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMG 122
           PLMNKPS+       K+FSCN+CMRKFYSSQALGGHQNAHKRERGA RRY+FQ+IMAMMG
Sbjct: 62  PLMNKPSSSSAAATAKMFSCNYCMRKFYSSQALGGHQNAHKRERGAARRYQFQKIMAMMG 121

Query: 123 LPLPLMNNAANLMVRSLSVRPHSL--------GHSHGGSSAAATTAARFDGDGGGGERLK 182
           LP PLMNNAAN MVRSL VRPHSL           HGGSSA   T ARF G         
Sbjct: 122 LP-PLMNNAANFMVRSLGVRPHSLLLQRPNREPLGHGGSSA---TVARFYG-AATSAATS 181

Query: 183 MAAAAILGEELMDMGWPGSFRFNSQQET-----EPLKLDLNLRL 208
            AAA  L ++ MD+ WPGSFR N+QQ+T     EPLKLDLNL+L
Sbjct: 182 AAAACTLEDDFMDITWPGSFRLNTQQQTDPPMSEPLKLDLNLKL 220

[Close]

BLAST of MS012198.1 vs. ExPASy Swiss-Prot
Match: Q39263 (Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 8.8e-12
Identity = 62/193 (32.12%), Postives = 86/193 (44.56%), Query Frame = 0


Query: 20  SNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGADSEPQPLMNKPSNLAPKVFSCNFC 79
           S S  NN N +++ ES +   L L L    ++ N     P+    +  +++ +VFSCN+C
Sbjct: 39  SLSFNNNNNNNLDLESSS---LTLPLSSTSESSN-----PEQQQQQQPSVSKRVFSCNYC 98

Query: 80  MRKFYSSQALGGHQNAHKRERGAVRRYKFQRI-------------------MAMMGLPLP 139
            RKFYSSQALGGHQNAHKRER   +R     +                    A+  LPL 
Sbjct: 99  QRKFYSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRGSSSNYAAAATAAALSCLPLH 158

Query: 140 LMNNAANLMVRSLSVRPHSLGHSHGGSSAAATT----AARFDGDGGGGERLKMAAAAILG 190
              N      R+L +R HS  H    +     T     ARF+    G           + 
Sbjct: 159 GSGNGNMTSFRTLGIRAHSSAHDVSMTRQTPETLIRNIARFNQGYFGN-----CIPFYVE 218

[Close]

BLAST of MS012198.1 vs. ExPASy Swiss-Prot
Match: Q42485 (Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.7e-10
Identity = 57/172 (33.14%), Postives = 77/172 (44.77%), Query Frame = 0


Query: 71  PKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRR---YKF-----------------QR 130
           P+VFSCN+C RKFYSSQALGGHQNAHKRER   +R   YK                   R
Sbjct: 65  PRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQYYKMTLSSLPSSAFAFGHGSVSR 124

Query: 131 IMAMMGLPL-PLMNNAANLMVRSLSV--RPHSLGHS------------HGGSSAAATTAA 190
             +M  LPL   +NN + L +++ S   +P  LG              H   +       
Sbjct: 125 FASMASLPLHGSVNNRSTLGIQAHSTIHKPSFLGRQTTSLSHVFKQSIHQKPTIGKMLPE 184

Query: 191 RFDGDGGGGERLKMAAAAILGEELMDMGWPGSFRFNSQQETEPLKLDLNLRL 208
           +F  +  G     M AA +  E +      G F+ N +   +  K+DL L+L
Sbjct: 185 KFHLEVAGNNNSNMVAAKL--ERI------GHFKSNQEDHNQFKKIDLTLKL 228

[Close]

BLAST of MS012198.1 vs. ExPASy Swiss-Prot
Match: Q39262 (Zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZFP3 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.3e-10
Identity = 39/79 (49.37%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 72  KVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMGL--------PLPLMN 131
           K+FSCN+C R FYSSQALGGHQNAHKRER   +R   QR+ A            PLP   
Sbjct: 59  KLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKR--GQRMAASASAFGHPYGFSPLPFHG 118

Query: 132 NAANLMVRSLSVRPHSLGH 143
              N   RSL ++ HS+ H
Sbjct: 119 QYNN--HRSLGIQAHSISH 133

[Close]

BLAST of MS012198.1 vs. ExPASy Swiss-Prot
Match: Q39266 (Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.4e-09
Identity = 63/199 (31.66%), Postives = 85/199 (42.71%), Query Frame = 0


Query: 1   MTEGGEETAELTATQKPGESNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGADSEPQ 60
           MTE  + + E T   + GE++S       + +   P    + L L  N       D+   
Sbjct: 1   MTESDDASRE-TPASRGGEASS-------NQDLSKPESNHVSLDLKLN-------DTFND 60

Query: 61  PLMNKPSNLAPKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMGLPLP 120
              +      P+VFSCN+C RKFYSSQALGGHQNAHKRER   +R         MG    
Sbjct: 61  DTKSTKCEANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKR------AMHMGRMFG 120

Query: 121 LMNNAANLMVRSLSVRPHSLGHSHGGSSAAATTAARFDGDGGGGERLKMAAAAILGEELM 180
             +        SL ++ HS G  H   S      +RF   G  G  + +      G    
Sbjct: 121 HHHRPYTYTSSSLGMQAHS-GLLHHTLSQPQPLVSRFHHQGYFGNTVPLFFDYDDGGS-- 175

Query: 181 DMGWPGSFRFNSQQETEPL 200
           D  WPGSFR   ++   P+
Sbjct: 181 DFFWPGSFRQVVEEAEAPV 175

[Close]

BLAST of MS012198.1 vs. ExPASy Swiss-Prot
Match: Q39261 (Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.0e-09
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 0


Query: 52  PNGADSEPQPLMNKPSNL-APKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRR 106
           P+   S      N  S L  P+VFSCN+C RKFYSSQALGGHQNAHK ER   ++
Sbjct: 29  PSSMSSSSSSSTNSSSCLEQPRVFSCNYCQRKFYSSQALGGHQNAHKLERTLAKK 83

[Close]

BLAST of MS012198.1 vs. ExPASy TrEMBL
Match: A0A6J1D3Z2 (zinc finger protein 4-like OS=Momordica charantia OX=3673 GN=LOC111017369 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 1.1e-110
Identity = 206/207 (99.52%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MTEGGEETAELTATQKPGESNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGADSEPQ 60
           MTEGGEETAELTATQKPGESNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGADSEPQ
Sbjct: 1   MTEGGEETAELTATQKPGESNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGADSEPQ 60

Query: 61  PLMNKPSNLAPKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMGLPLP 120
           PLMNKPSNLAPKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMGLPLP
Sbjct: 61  PLMNKPSNLAPKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMGLPLP 120

Query: 121 LMNNAANLMVRSLSVRPHSLGHSHGGSSAAATTAARFDGDGGGGERLKMAAAAILGEELM 180
           LMNNAANLMVRSLSVRPHSLGHSHGGSSAAATTAARFDGDGGGG+RLKMAAAAILGEELM
Sbjct: 121 LMNNAANLMVRSLSVRPHSLGHSHGGSSAAATTAARFDGDGGGGKRLKMAAAAILGEELM 180

Query: 181 DMGWPGSFRFNSQQETEPLKLDLNLRL 208
           DMGWPGSFRFNSQQETEPLKLDLNLRL
Sbjct: 181 DMGWPGSFRFNSQQETEPLKLDLNLRL 207

[Close]

BLAST of MS012198.1 vs. ExPASy TrEMBL
Match: A0A6J1GK61 (zinc finger protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111455111 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.2e-59
Identity = 145/224 (64.73%), Postives = 161/224 (71.88%), Query Frame = 0


Query: 3   EGGEETAELTA-TQKPGESNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGA-DSEPQ 62
           E  EE AELTA TQKPGES+ T+ NRNES   E+PA GWL+LSLGGNLQ  NG  DS+ Q
Sbjct: 2   EDREEAAELTATTQKPGESSPTRINRNESTANENPARGWLNLSLGGNLQPCNGTDDSDSQ 61

Query: 63  PLMNKPSN----LAPKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMG 122
           PLMNKPS+       K+FSCN+CMRKFYSSQALGGHQNAHKRERGA RRY+FQ+IMAMMG
Sbjct: 62  PLMNKPSSSSAAATAKMFSCNYCMRKFYSSQALGGHQNAHKRERGAARRYQFQKIMAMMG 121

Query: 123 LPLPLMNNAANLMVRSLSVRPHSL--------GHSHGGSSAAATTAARFDGDGGGGERLK 182
           LP PLMNNAAN MVRSL VRPHSL           HGGSSA   T ARF G         
Sbjct: 122 LP-PLMNNAANFMVRSLGVRPHSLLLQRPNREPLGHGGSSA---TVARFYG-AATSASAS 181

Query: 183 MAAAAILGEELMDMGWPGSFRFNSQQET-----EPLKLDLNLRL 208
            AAA  L ++ MD+ WPGSFR N+QQ+T     EPLKLDLNL+L
Sbjct: 182 AAAACTLEDDFMDITWPGSFRLNTQQQTEPPMSEPLKLDLNLKL 220

[Close]

BLAST of MS012198.1 vs. ExPASy TrEMBL
Match: A0A6J1I5X1 (zinc finger protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111470983 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 3.4e-59
Identity = 144/224 (64.29%), Postives = 160/224 (71.43%), Query Frame = 0


Query: 3   EGGEETAELTA-TQKPGESNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGA-DSEPQ 62
           E  EE AELTA TQKP ES+ T+ NRNES   E+PA GWL+LSLGGNLQ  NG  DS+ Q
Sbjct: 2   EDREEAAELTATTQKPSESSPTRINRNESTANENPARGWLNLSLGGNLQPSNGTNDSDSQ 61

Query: 63  PLMNKPSN----LAPKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMG 122
           PLMNKPS+       K+FSCN+CMRKFYSSQALGGHQNAHKRERGA RRY+FQ+IMAMMG
Sbjct: 62  PLMNKPSSSSAAATAKMFSCNYCMRKFYSSQALGGHQNAHKRERGAARRYQFQKIMAMMG 121

Query: 123 LPLPLMNNAANLMVRSLSVRPHSL--------GHSHGGSSAAATTAARFDGDGGGGERLK 182
           LP PLMNNAAN MVRSL VRPHSL           HGGSSA   T ARF G         
Sbjct: 122 LP-PLMNNAANFMVRSLGVRPHSLLLQRPNREPLGHGGSSA---TVARFYG-AATSAATS 181

Query: 183 MAAAAILGEELMDMGWPGSFRFNSQQET-----EPLKLDLNLRL 208
            AAA  L ++ MD+ WPGSFR N+QQ+T     EPLKLDLNL+L
Sbjct: 182 AAAACTLEDDFMDITWPGSFRLNTQQQTDPPMSEPLKLDLNLKL 220

[Close]

BLAST of MS012198.1 vs. ExPASy TrEMBL
Match: A0A0A0K2Z6 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G071620 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 4.8e-53
Identity = 127/212 (59.91%), Postives = 156/212 (73.58%), Query Frame = 0


Query: 1   MTEGGEETAELTATQKPGESNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGAD-SEP 60
           M E  EET +L   QK  ESNSTK NRN+++  E+ A+GWL+LSLGGN Q  N  D S+ 
Sbjct: 1   MMEDREETTKLRDIQKADESNSTKINRNDTIANENLAKGWLNLSLGGNFQTLNDIDCSDS 60

Query: 61  QPLMNKPSNLAP-KVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMGLP 120
           QPLMNK +N +P K+FSC+FCMRKFYSSQALGGHQNAHKRERGA RRY+FQR+M MMGLP
Sbjct: 61  QPLMNKANNSSPTKMFSCHFCMRKFYSSQALGGHQNAHKRERGAARRYQFQRLMTMMGLP 120

Query: 121 LPLMNNAAN-LMVRSLSVRPHSLG-HSHGGSSAAATTAARFDGDGGGGERLKMAAAAILG 180
             L+NNAAN  M++SL V+PHS   HSHGGS+A   T ARF+       R   ++ ++  
Sbjct: 121 PLLVNNAANSTMLKSLGVKPHSFRLHSHGGSAA---TVARFENGTASIGRGTASSCSLED 180

Query: 181 EELMDMGWPGSFRFNSQQETE-PLKLDLNLRL 208
           E LM + WPGSFR N+QQ+TE  +KLDLNL+L
Sbjct: 181 ESLMHITWPGSFRLNTQQKTESSIKLDLNLKL 209

[Close]

BLAST of MS012198.1 vs. ExPASy TrEMBL
Match: A0A5A7SMP7 (Zinc finger protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001010 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 4.1e-52
Identity = 130/210 (61.90%), Postives = 153/210 (72.86%), Query Frame = 0


Query: 3   EGGEETAELTATQKPGESNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGAD-SEPQP 62
           E  EET +L   QK  ESNST+ NRN+S+  E+ A+GWL+LSLGGN Q  N  D S+ QP
Sbjct: 2   EDREETTKLRDIQKADESNSTRINRNDSIANENLAKGWLNLSLGGNFQTSNDKDYSDSQP 61

Query: 63  LMNKPSN-LAPKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMGLPLP 122
           LMNK +N  A K+FSC+FCMRKFYSSQALGGHQNAHKRERGA RRY+FQRIM MMGLP P
Sbjct: 62  LMNKANNSSATKMFSCHFCMRKFYSSQALGGHQNAHKRERGAARRYQFQRIMTMMGLP-P 121

Query: 123 LMNNAAN-LMVRSLSVRPHSLG-HSHGGSSAAATTAARFDGDGGGGERLKMAAAAILGEE 182
            MNNAAN +M+RSL VRPHSL  HSHG S+A   T ARF+       R   A  ++  E 
Sbjct: 122 SMNNAANSIMLRSLGVRPHSLRLHSHGESAA---TVARFENATATIGRGTTAFCSLEDES 181

Query: 183 LMDMGWPGSFRFNSQQETEP-LKLDLNLRL 208
           LM + WPGSFR N+Q++TEP   LDLNL+L
Sbjct: 182 LMHITWPGSFRLNTQRKTEPSTTLDLNLKL 207

[Close]

BLAST of MS012198.1 vs. TAIR 10
Match: AT1G66140.1 (zinc finger protein 4 )

HSP 1 Score: 72.0 bits (175), Expect = 6.3e-13
Identity = 62/193 (32.12%), Postives = 86/193 (44.56%), Query Frame = 0


Query: 20  SNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGADSEPQPLMNKPSNLAPKVFSCNFC 79
           S S  NN N +++ ES +   L L L    ++ N     P+    +  +++ +VFSCN+C
Sbjct: 39  SLSFNNNNNNNLDLESSS---LTLPLSSTSESSN-----PEQQQQQQPSVSKRVFSCNYC 98

Query: 80  MRKFYSSQALGGHQNAHKRERGAVRRYKFQRI-------------------MAMMGLPLP 139
            RKFYSSQALGGHQNAHKRER   +R     +                    A+  LPL 
Sbjct: 99  QRKFYSSQALGGHQNAHKRERTLAKRAMRMGLAGVFPGRGSSSNYAAAATAAALSCLPLH 158

Query: 140 LMNNAANLMVRSLSVRPHSLGHSHGGSSAAATT----AARFDGDGGGGERLKMAAAAILG 190
              N      R+L +R HS  H    +     T     ARF+    G           + 
Sbjct: 159 GSGNGNMTSFRTLGIRAHSSAHDVSMTRQTPETLIRNIARFNQGYFGN-----CIPFYVE 218

[Close]

BLAST of MS012198.1 vs. TAIR 10
Match: AT5G10970.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-12
Identity = 38/87 (43.68%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 61  PLMNKPSNLAPKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMG---- 120
           P  N  ++   K+FSCN+C R FYSSQALGGHQNAHKRER   +R +     A  G    
Sbjct: 91  PSFNGSTSTEQKLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKRGQRMASAAAFGHPYG 150

Query: 121 -LPLPLMNNAANLMVRSLSVRPHSLGH 143
             P+P     +N   R+L ++ HS+ H
Sbjct: 151 FAPVPFHGQYSN---RTLGIQAHSMSH 174

[Close]

BLAST of MS012198.1 vs. TAIR 10
Match: AT1G80730.1 (zinc-finger protein 1 )

HSP 1 Score: 66.6 bits (161), Expect = 2.6e-11
Identity = 57/172 (33.14%), Postives = 77/172 (44.77%), Query Frame = 0


Query: 71  PKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRR---YKF-----------------QR 130
           P+VFSCN+C RKFYSSQALGGHQNAHKRER   +R   YK                   R
Sbjct: 65  PRVFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGQYYKMTLSSLPSSAFAFGHGSVSR 124

Query: 131 IMAMMGLPL-PLMNNAANLMVRSLSV--RPHSLGHS------------HGGSSAAATTAA 190
             +M  LPL   +NN + L +++ S   +P  LG              H   +       
Sbjct: 125 FASMASLPLHGSVNNRSTLGIQAHSTIHKPSFLGRQTTSLSHVFKQSIHQKPTIGKMLPE 184

Query: 191 RFDGDGGGGERLKMAAAAILGEELMDMGWPGSFRFNSQQETEPLKLDLNLRL 208
           +F  +  G     M AA +  E +      G F+ N +   +  K+DL L+L
Sbjct: 185 KFHLEVAGNNNSNMVAAKL--ERI------GHFKSNQEDHNQFKKIDLTLKL 228

[Close]

BLAST of MS012198.1 vs. TAIR 10
Match: AT5G25160.1 (zinc finger protein 3 )

HSP 1 Score: 65.9 bits (159), Expect = 4.5e-11
Identity = 39/79 (49.37%), Postives = 46/79 (58.23%), Query Frame = 0


Query: 72  KVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMGL--------PLPLMN 131
           K+FSCN+C R FYSSQALGGHQNAHKRER   +R   QR+ A            PLP   
Sbjct: 59  KLFSCNYCQRTFYSSQALGGHQNAHKRERTLAKR--GQRMAASASAFGHPYGFSPLPFHG 118

Query: 132 NAANLMVRSLSVRPHSLGH 143
              N   RSL ++ HS+ H
Sbjct: 119 QYNN--HRSLGIQAHSISH 133

[Close]

BLAST of MS012198.1 vs. TAIR 10
Match: AT1G24625.1 (zinc finger protein 7 )

HSP 1 Score: 62.8 bits (151), Expect = 3.8e-10
Identity = 63/199 (31.66%), Postives = 85/199 (42.71%), Query Frame = 0


Query: 1   MTEGGEETAELTATQKPGESNSTKNNRNESMECESPAEGWLDLSLGGNLQAPNGADSEPQ 60
           MTE  + + E T   + GE++S       + +   P    + L L  N       D+   
Sbjct: 1   MTESDDASRE-TPASRGGEASS-------NQDLSKPESNHVSLDLKLN-------DTFND 60

Query: 61  PLMNKPSNLAPKVFSCNFCMRKFYSSQALGGHQNAHKRERGAVRRYKFQRIMAMMGLPLP 120
              +      P+VFSCN+C RKFYSSQALGGHQNAHKRER   +R         MG    
Sbjct: 61  DTKSTKCEANPRVFSCNYCRRKFYSSQALGGHQNAHKRERTMAKR------AMHMGRMFG 120

Query: 121 LMNNAANLMVRSLSVRPHSLGHSHGGSSAAATTAARFDGDGGGGERLKMAAAAILGEELM 180
             +        SL ++ HS G  H   S      +RF   G  G  + +      G    
Sbjct: 121 HHHRPYTYTSSSLGMQAHS-GLLHHTLSQPQPLVSRFHHQGYFGNTVPLFFDYDDGGS-- 175

Query: 181 DMGWPGSFRFNSQQETEPL 200
           D  WPGSFR   ++   P+
Sbjct: 181 DFFWPGSFRQVVEEAEAPV 175

The following BLAST results are available for this feature:

BLAST of MS012198.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148804.1	2.3e-110	99.52	zinc finger protein 4-like [Momordica charantia] >XP_022148805.1 zinc finger pro...	[more]
KAG6571937.1	6.4e-60	64.73	Zinc finger protein 7, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7011625.1	8.4e-60	65.16	Zinc finger protein 7 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022952416.1	2.4e-59	64.73	zinc finger protein 4-like [Cucurbita moschata] >XP_022952417.1 zinc finger prot...	[more]
XP_022972416.1	7.1e-59	64.29	zinc finger protein 4-like [Cucurbita maxima] >XP_022972417.1 zinc finger protei...	[more]

BLAST of MS012198.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39263	8.8e-12	32.12	Zinc finger protein 4 OS=Arabidopsis thaliana OX=3702 GN=ZFP4 PE=2 SV=2	[more]
Q42485	3.7e-10	33.14	Zinc finger protein 1 OS=Arabidopsis thaliana OX=3702 GN=ZFP1 PE=2 SV=1	[more]
Q39262	6.3e-10	49.37	Zinc finger protein 3 OS=Arabidopsis thaliana OX=3702 GN=ZFP3 PE=1 SV=1	[more]
Q39266	5.4e-09	31.66	Zinc finger protein 7 OS=Arabidopsis thaliana OX=3702 GN=ZFP7 PE=1 SV=1	[more]
Q39261	7.0e-09	56.36	Zinc finger protein 2 OS=Arabidopsis thaliana OX=3702 GN=ZFP2 PE=1 SV=1	[more]

BLAST of MS012198.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D3Z2	1.1e-110	99.52	zinc finger protein 4-like OS=Momordica charantia OX=3673 GN=LOC111017369 PE=4 S...	[more]
A0A6J1GK61	1.2e-59	64.73	zinc finger protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111455111 PE=4 SV...	[more]
A0A6J1I5X1	3.4e-59	64.29	zinc finger protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111470983 PE=4 SV=1	[more]
A0A0A0K2Z6	4.8e-53	59.91	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G071620 P...	[more]
A0A5A7SMP7	4.1e-52	61.90	Zinc finger protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of MS012198.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G66140.1	6.3e-13	32.12	zinc finger protein 4	[more]
AT5G10970.1	1.8e-12	43.68	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT1G80730.1	2.6e-11	33.14	zinc-finger protein 1	[more]
AT5G25160.1	4.5e-11	49.37	zinc finger protein 3	[more]
AT1G24625.1	3.8e-10	31.66	zinc finger protein 7	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 60..114 e-value: 1.5E-5 score: 26.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..32
None	No IPR available	PANTHER	PTHR47593:SF8	ZINC FINGER PROTEIN 4-LIKE	coord: 6..207
None	No IPR available	PANTHER	PTHR47593	ZINC FINGER PROTEIN 4-LIKE	coord: 6..207
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 76..96
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 74..101 score: 10.844938
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 71..100

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS012198	MS012198	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS012198.1-cds	MS012198.1-cds-scaffold797:371256..371876	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS012198.1	MS012198.1-protein	polypeptide