MS010484.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS010484.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein TAPETUM DETERMINANT 1-like
Location	scaffold35: 9496 .. 9828 (+)
Sequence length	333
RNA-Seq Expression	MS010484.1
Synteny	MS010484.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTATCATTTTTATTTTCCATCAGGGAATTGCCAGTGTTATTTGAACAACCTAACAATCAGCCAAAAGGAAACTGGATTTCAGATCCATGGAATGACAGAATGGAGAGTCACAATAAGCAACAATTGCCATTGTTCTCAATCGGACGTGAAATTGGACTGCACTGGATTTCAAACTACATTAAGCATTGATCCCACCATCCTAGCCATTTCTGACTCTGAGTGTTTGGTCAACAATGGGCAGCCAATTTTCAGTTCCAAACCCATCACTTTCACTTATGCATCGAACCCATCATTCCCTTTCAAGCCCATCTCTTCGCAAATTGCTTGTTCT

mRNA sequence

TATTATCATTTTTATTTTCCATCAGGGAATTGCCAGTGTTATTTGAACAACCTAACAATCAGCCAAAAGGAAACTGGATTTCAGATCCATGGAATGACAGAATGGAGAGTCACAATAAGCAACAATTGCCATTGTTCTCAATCGGACGTGAAATTGGACTGCACTGGATTTCAAACTACATTAAGCATTGATCCCACCATCCTAGCCATTTCTGACTCTGAGTGTTTGGTCAACAATGGGCAGCCAATTTTCAGTTCCAAACCCATCACTTTCACTTATGCATCGAACCCATCATTCCCTTTCAAGCCCATCTCTTCGCAAATTGCTTGTTCT

Coding sequence (CDS)

TATTATCATTTTTATTTTCCATCAGGGAATTGCCAGTGTTATTTGAACAACCTAACAATCAGCCAAAAGGAAACTGGATTTCAGATCCATGGAATGACAGAATGGAGAGTCACAATAAGCAACAATTGCCATTGTTCTCAATCGGACGTGAAATTGGACTGCACTGGATTTCAAACTACATTAAGCATTGATCCCACCATCCTAGCCATTTCTGACTCTGAGTGTTTGGTCAACAATGGGCAGCCAATTTTCAGTTCCAAACCCATCACTTTCACTTATGCATCGAACCCATCATTCCCTTTCAAGCCCATCTCTTCGCAAATTGCTTGTTCT

Protein sequence

YYHFYFPSGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQIACS

Homology

[Close]

BLAST of MS010484.1 vs. NCBI nr
Match: XP_031742370.1 (uncharacterized protein At1g05835-like [Cucumis sativus] >KGN48771.1 hypothetical protein Csa_003478 [Cucumis sativus])

HSP 1 Score: 181.8 bits (460), Expect = 3.2e-42
Identity = 82/104 (78.85%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 8   SGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTI 67
           +GNCQC+LNN+ ISQ  TGFQIHGMTEW+VTI+NNC CSQSD+KLDC GF TTLSIDP+I
Sbjct: 19  TGNCQCFLNNIKISQSMTGFQIHGMTEWKVTITNNCICSQSDLKLDCKGFATTLSIDPSI 78

Query: 68  LAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQIACS 112
           LAISDSECLVNNGQPIF+S+PITF YA +P F FKP+SSQI+CS
Sbjct: 79  LAISDSECLVNNGQPIFNSRPITFKYAQSPKFNFKPLSSQISCS 122

[Close]

BLAST of MS010484.1 vs. NCBI nr
Match: XP_008440637.1 (PREDICTED: protein TAPETUM DETERMINANT 1-like [Cucumis melo] >KAA0036281.1 protein TAPETUM DETERMINANT 1-like [Cucumis melo var. makuwa] >TYK12675.1 protein TAPETUM DETERMINANT 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 181.4 bits (459), Expect = 4.2e-42
Identity = 83/107 (77.57%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 5   YFPSGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSID 64
           +  +GNCQC LNN+TISQK TGFQIHGMTEW VTI+NNC CSQSD+KLDC GF TTLSID
Sbjct: 16  FISTGNCQCVLNNITISQKMTGFQIHGMTEWDVTITNNCICSQSDLKLDCKGFATTLSID 75

Query: 65  PTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQIACS 112
           P+IL+ISD+ECLVNNG+PIF+SKPITF YA  P F FKPISSQI+CS
Sbjct: 76  PSILSISDNECLVNNGKPIFNSKPITFKYAQTPKFNFKPISSQISCS 122

[Close]

BLAST of MS010484.1 vs. NCBI nr
Match: XP_038881121.1 (uncharacterized protein At1g05835-like [Benincasa hispida])

HSP 1 Score: 177.6 bits (449), Expect = 6.1e-41
Identity = 80/104 (76.92%), Postives = 93/104 (89.42%), Query Frame = 0


Query: 8   SGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTI 67
           +GNCQC LNN+TISQ+ TGFQIHGMTEW+VTISNNC CSQS+VK+DC GFQTT SIDP+I
Sbjct: 19  TGNCQCILNNITISQRMTGFQIHGMTEWKVTISNNCPCSQSEVKIDCKGFQTTESIDPSI 78

Query: 68  LAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQIACS 112
           LA+ D+ECLVNNG PIF+S PITF+YA +P F FKPISSQI+CS
Sbjct: 79  LAVFDTECLVNNGLPIFNSNPITFSYAQDPQFNFKPISSQISCS 122

[Close]

BLAST of MS010484.1 vs. NCBI nr
Match: KAG7026827.1 (hypothetical protein SDJN02_10834, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173.7 bits (439), Expect = 8.8e-40
Identity = 80/107 (74.77%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 5   YFPSGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSID 64
           + P GN QC+L+N+TI+Q  TGFQIHGMTEW  T+SN C CSQS+VKLDC GFQTT SID
Sbjct: 16  FLPKGNFQCFLSNITITQSMTGFQIHGMTEWNTTVSNICLCSQSEVKLDCRGFQTTESID 75

Query: 65  PTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQIACS 112
           P ILAI+D+ECLVNNG PIF+S PITFTYA NP F FKPISSQIACS
Sbjct: 76  PLILAITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIACS 122

[Close]

BLAST of MS010484.1 vs. NCBI nr
Match: XP_022962948.1 (uncharacterized protein At1g05835-like [Cucurbita moschata])

HSP 1 Score: 171.0 bits (432), Expect = 5.7e-39
Identity = 79/102 (77.45%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 10  NCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILA 69
           N QC+L+N+TI Q  TGFQIHGMTEW  T+SNNC CSQS+VKLDC GFQTT SIDP ILA
Sbjct: 21  NSQCFLSNITIRQSMTGFQIHGMTEWNTTVSNNCLCSQSEVKLDCRGFQTTKSIDPLILA 80

Query: 70  ISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQIACS 112
           I+D+ECLVNNG PIF+S PITFTYA NP F FKPISSQIACS
Sbjct: 81  ITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIACS 122

[Close]

BLAST of MS010484.1 vs. ExPASy Swiss-Prot
Match: Q1G3T1 (TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-05
Identity = 26/96 (27.08%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 13  CYLNNLTISQKETGFQIHGMTEWRVTISNNC--HCSQSDVKLDCTGFQTTLSIDPTILAI 72
           C  +++ + Q  T     G+  + V I N+C   C+ +++ + C  F +   ++P +   
Sbjct: 80  CSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRR 139

Query: 73  SD-SECLVNNGQPIFSSKPITFTYASNPSFPFKPIS 106
            D  +CLVN+GQP+   + ++F YA++ S+P    S
Sbjct: 140 LDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVAS 175

[Close]

BLAST of MS010484.1 vs. ExPASy TrEMBL
Match: A0A0A0KLZ6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500630 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.6e-42
Identity = 82/104 (78.85%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 8   SGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTI 67
           +GNCQC+LNN+ ISQ  TGFQIHGMTEW+VTI+NNC CSQSD+KLDC GF TTLSIDP+I
Sbjct: 19  TGNCQCFLNNIKISQSMTGFQIHGMTEWKVTITNNCICSQSDLKLDCKGFATTLSIDPSI 78

Query: 68  LAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQIACS 112
           LAISDSECLVNNGQPIF+S+PITF YA +P F FKP+SSQI+CS
Sbjct: 79  LAISDSECLVNNGQPIFNSRPITFKYAQSPKFNFKPLSSQISCS 122

[Close]

BLAST of MS010484.1 vs. ExPASy TrEMBL
Match: A0A5D3CMA8 (Protein TAPETUM DETERMINANT 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G002630 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.0e-42
Identity = 83/107 (77.57%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 5   YFPSGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSID 64
           +  +GNCQC LNN+TISQK TGFQIHGMTEW VTI+NNC CSQSD+KLDC GF TTLSID
Sbjct: 16  FISTGNCQCVLNNITISQKMTGFQIHGMTEWDVTITNNCICSQSDLKLDCKGFATTLSID 75

Query: 65  PTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQIACS 112
           P+IL+ISD+ECLVNNG+PIF+SKPITF YA  P F FKPISSQI+CS
Sbjct: 76  PSILSISDNECLVNNGKPIFNSKPITFKYAQTPKFNFKPISSQISCS 122

[Close]

BLAST of MS010484.1 vs. ExPASy TrEMBL
Match: A0A1S3B1L8 (protein TAPETUM DETERMINANT 1-like OS=Cucumis melo OX=3656 GN=LOC103484995 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.0e-42
Identity = 83/107 (77.57%), Postives = 94/107 (87.85%), Query Frame = 0


Query: 5   YFPSGNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSID 64
           +  +GNCQC LNN+TISQK TGFQIHGMTEW VTI+NNC CSQSD+KLDC GF TTLSID
Sbjct: 16  FISTGNCQCVLNNITISQKMTGFQIHGMTEWDVTITNNCICSQSDLKLDCKGFATTLSID 75

Query: 65  PTILAISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQIACS 112
           P+IL+ISD+ECLVNNG+PIF+SKPITF YA  P F FKPISSQI+CS
Sbjct: 76  PSILSISDNECLVNNGKPIFNSKPITFKYAQTPKFNFKPISSQISCS 122

[Close]

BLAST of MS010484.1 vs. ExPASy TrEMBL
Match: A0A6J1HGA0 (uncharacterized protein At1g05835-like OS=Cucurbita moschata OX=3662 GN=LOC111463301 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.8e-39
Identity = 79/102 (77.45%), Postives = 87/102 (85.29%), Query Frame = 0


Query: 10  NCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTILA 69
           N QC+L+N+TI Q  TGFQIHGMTEW  T+SNNC CSQS+VKLDC GFQTT SIDP ILA
Sbjct: 21  NSQCFLSNITIRQSMTGFQIHGMTEWNTTVSNNCLCSQSEVKLDCRGFQTTKSIDPLILA 80

Query: 70  ISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQIACS 112
           I+D+ECLVNNG PIF+S PITFTYA NP F FKPISSQIACS
Sbjct: 81  ITDTECLVNNGLPIFNSTPITFTYAQNPQFNFKPISSQIACS 122

[Close]

BLAST of MS010484.1 vs. ExPASy TrEMBL
Match: A0A6J1KP98 (protein TAPETUM DETERMINANT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111497464 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.4e-35
Identity = 74/103 (71.84%), Postives = 83/103 (80.58%), Query Frame = 0


Query: 9   GNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTIL 68
           GNCQC  N++ I Q  +GFQIHGMTEW VTISN C CSQS+VKLDC GFQTT SIDP++L
Sbjct: 20  GNCQCVSNDIAIRQTMSGFQIHGMTEWNVTISNICLCSQSEVKLDCRGFQTTKSIDPSVL 79

Query: 69  AISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQIACS 112
           A++DSECLVNNG PIF S  ITFTYA +P F FK ISSQI CS
Sbjct: 80  AVTDSECLVNNGLPIFKSNSITFTYAHDPKFDFKLISSQINCS 122

[Close]

BLAST of MS010484.1 vs. TAIR 10
Match: AT4G32090.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 72.0 bits (175), Expect = 3.4e-13
Identity = 34/100 (34.00%), Postives = 50/100 (50.00%), Query Frame = 0


Query: 9   GNCQCYLNNLTISQKETGFQIHGMTEWRVTISNNCHCSQSDVKLDCTGFQTTLSIDPTIL 68
           G C C    + I    TG +I G  EW+VT+ N C+C Q  V L C GF     + P +L
Sbjct: 20  GLCLCTFGKIQIGAVRTGREIGGQPEWKVTVINTCNCFQKHVTLSCGGFAPAKPVKPLLL 79

Query: 69  AISDSECLVNNGQPIFSSKPITFTYASNPSFPFKPISSQI 109
               + CL+  G  + +     FTYA  P + F+P+ S++
Sbjct: 80  QPQGNTCLMIKGAALPAGATAQFTYAGQP-YIFRPVGSKV 118

[Close]

BLAST of MS010484.1 vs. TAIR 10
Match: AT1G32583.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: tapetum determinant 1 (TAIR:AT4G24972.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.8e-06
Identity = 26/96 (27.08%), Postives = 51/96 (53.12%), Query Frame = 0


Query: 13  CYLNNLTISQKETGFQIHGMTEWRVTISNNC--HCSQSDVKLDCTGFQTTLSIDPTILAI 72
           C  +++ + Q  T     G+  + V I N+C   C+ +++ + C  F +   ++P +   
Sbjct: 80  CSKDDIVLFQGSTNPLPSGVPSYTVEIFNSCVSDCNIAEIHVSCGWFSSVRLVNPRVFRR 139

Query: 73  SD-SECLVNNGQPIFSSKPITFTYASNPSFPFKPIS 106
            D  +CLVN+GQP+   + ++F YA++ S+P    S
Sbjct: 140 LDYDDCLVNDGQPLGPGQSLSFQYANSFSYPLSVAS 175

The following BLAST results are available for this feature:

BLAST of MS010484.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742370.1	3.2e-42	78.85	uncharacterized protein At1g05835-like [Cucumis sativus] >KGN48771.1 hypothetica...	[more]
XP_008440637.1	4.2e-42	77.57	PREDICTED: protein TAPETUM DETERMINANT 1-like [Cucumis melo] >KAA0036281.1 prote...	[more]
XP_038881121.1	6.1e-41	76.92	uncharacterized protein At1g05835-like [Benincasa hispida]	[more]
KAG7026827.1	8.8e-40	74.77	hypothetical protein SDJN02_10834, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022962948.1	5.7e-39	77.45	uncharacterized protein At1g05835-like [Cucurbita moschata]	[more]

BLAST of MS010484.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3T1	2.5e-05	27.08	TPD1 protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=TDL1 PE=2 SV=1	[more]

BLAST of MS010484.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLZ6	1.6e-42	78.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G500630 PE=4 SV=1	[more]
A0A5D3CMA8	2.0e-42	77.57	Protein TAPETUM DETERMINANT 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B1L8	2.0e-42	77.57	protein TAPETUM DETERMINANT 1-like OS=Cucumis melo OX=3656 GN=LOC103484995 PE=4 ...	[more]
A0A6J1HGA0	2.8e-39	77.45	uncharacterized protein At1g05835-like OS=Cucurbita moschata OX=3662 GN=LOC11146...	[more]
A0A6J1KP98	2.4e-35	71.84	protein TAPETUM DETERMINANT 1-like OS=Cucurbita maxima OX=3661 GN=LOC111497464 P...	[more]

BLAST of MS010484.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32090.1	3.4e-13	34.00	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]
AT1G32583.1	1.8e-06	27.08	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040361	Tapetum determinant 1	PANTHER	PTHR33184	PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED	coord: 8..111
None	No IPR available	PANTHER	PTHR33184:SF44	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN	coord: 8..111

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS010484	MS010484	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS010484.1-cds	MS010484.1-cds-scaffold35:9496..9828	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS010484.1	MS010484.1-protein	polypeptide