MS010096.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS010096.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	glycine-rich RNA-binding protein RZ1C-like
Location	scaffold779: 615791 .. 617106 (+)
Sequence length	690
RNA-Seq Expression	MS010096.1
Synteny	MS010096.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCGGAAGGAAGAGTTCGAAGTATACGTTGGAGGATTGTCGTGGTGCATATCGGAGCGAGAGCTCCAAGATGCCTTCAGCCGTTTCGGAAGAATTATCGATACTCGGGTAACATTTCGTATTTTTGTCATTTTTCCGTGCATTTATCTCTGTTTTGGCATTTCCACGTCCTACTAAGTTCCTGCGTTTTGGCTCTGTGCTTATCATGCACTTGAGTGATTTTTAGGGTTGCATTTCCTGGTCCAATGCCTGCATGTTTATTGTTTGGGATTAATTGTATTTTACAGGAGAAGAGTTGAGATATCGTAATTTTCGCTTTCCACATCCTCAATGCAAGGCAACGACATTTATTTACTTTGGTTTATGCTGGAGGTTTCAGGTGTCATACTGAAGGATTTCTGCTTGTTCGAGATTTTACTAAGTGGGTTTCATTTTCATTAGGCCAAGCTGCAGCTATATTCCTGCAAGATTTCTGTAGGTCTAATTCTTGTTTTGATCGATTATTATAGTCGTGAAAATTTATCTTTTACTAAGTGAGTTTCATCACGCCAAGCTGCAGCTATATTTCTATAGGATTTTTGTAGGTCCAAATATTGTTTTGACTGATTATTACCGTCATGCTTAATTTTGTTAATCTCCAGGATCATATGAAGAATTAACTTATTTCTGTTGAGTTTCCATCCTTAAATAATTTTTGTTTGTTTGCATGAGTCGAATTGGTGGTGCCTCTGCAGGTCATTATAGACAGATTTCATCGTTGTCGTGGATATGGATTTATTACCTTTGCAAATCATCGAGGGATGGATAATGCAATCAGGGAAATGAATGGGCAGGAATTTGACCAGGGGATTATCACAGTGTCTAAGGCTAAACAACCCGAAATAAGGGGAGAATATGTAGAACCATGCTTTAGCAGAGGCTACTTATCTGGTGGTCGGGATAGCTTGAGGAGAGCTAGTTCTGGGCTAAAAATGGAGGGAGAAGATATAGGGCCAGAGATTGAGAGAGGTTACTCATCTGGTGGTCGGGATAGCTTTAGGAGAGGAGGTAGATCTGCGGTGCATGATGTATGCTATAATTGTGGATGCTTGGGGCATTGGGCACGTGATTGTCCTTTAGCTGGAAGGCGTAGACCCTCATTTTCATCTCGTTCTTGGTTTGAAAGGGATGACAGTGAGAATTCTTTTGGGGAAGACCGTGATCGATATGTGGACGAGCAATATGATGGAGGACGAGATAGAGTTAGGGATCATCGTCTAGATAATAAACAGGACAAGTATGGATGCTACAACTACCATCATAGCGACAGGTAT

mRNA sequence

ATGGCTCGGAAGGAAGAGTTCGAAGTATACGTTGGAGGATTGTCGTGGTGCATATCGGAGCGAGAGCTCCAAGATGCCTTCAGCCGTTTCGGAAGAATTATCGATACTCGGGTCATTATAGACAGATTTCATCGTTGTCGTGGATATGGATTTATTACCTTTGCAAATCATCGAGGGATGGATAATGCAATCAGGGAAATGAATGGGCAGGAATTTGACCAGGGGATTATCACAGTGTCTAAGGCTAAACAACCCGAAATAAGGGGAGAATATGTAGAACCATGCTTTAGCAGAGGCTACTTATCTGGTGGTCGGGATAGCTTGAGGAGAGCTAGTTCTGGGCTAAAAATGGAGGGAGAAGATATAGGGCCAGAGATTGAGAGAGGTTACTCATCTGGTGGTCGGGATAGCTTTAGGAGAGGAGGTAGATCTGCGGTGCATGATGTATGCTATAATTGTGGATGCTTGGGGCATTGGGCACGTGATTGTCCTTTAGCTGGAAGGCGTAGACCCTCATTTTCATCTCGTTCTTGGTTTGAAAGGGATGACAGTGAGAATTCTTTTGGGGAAGACCGTGATCGATATGTGGACGAGCAATATGATGGAGGACGAGATAGAGTTAGGGATCATCGTCTAGATAATAAACAGGACAAGTATGGATGCTACAACTACCATCATAGCGACAGGTAT

Coding sequence (CDS)

ATGGCTCGGAAGGAAGAGTTCGAAGTATACGTTGGAGGATTGTCGTGGTGCATATCGGAGCGAGAGCTCCAAGATGCCTTCAGCCGTTTCGGAAGAATTATCGATACTCGGGTCATTATAGACAGATTTCATCGTTGTCGTGGATATGGATTTATTACCTTTGCAAATCATCGAGGGATGGATAATGCAATCAGGGAAATGAATGGGCAGGAATTTGACCAGGGGATTATCACAGTGTCTAAGGCTAAACAACCCGAAATAAGGGGAGAATATGTAGAACCATGCTTTAGCAGAGGCTACTTATCTGGTGGTCGGGATAGCTTGAGGAGAGCTAGTTCTGGGCTAAAAATGGAGGGAGAAGATATAGGGCCAGAGATTGAGAGAGGTTACTCATCTGGTGGTCGGGATAGCTTTAGGAGAGGAGGTAGATCTGCGGTGCATGATGTATGCTATAATTGTGGATGCTTGGGGCATTGGGCACGTGATTGTCCTTTAGCTGGAAGGCGTAGACCCTCATTTTCATCTCGTTCTTGGTTTGAAAGGGATGACAGTGAGAATTCTTTTGGGGAAGACCGTGATCGATATGTGGACGAGCAATATGATGGAGGACGAGATAGAGTTAGGGATCATCGTCTAGATAATAAACAGGACAAGTATGGATGCTACAACTACCATCATAGCGACAGGTAT

Protein sequence

MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDRFHRCRGYGFITFANHRGMDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY

Homology

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BLAST of MS010096.1 vs. NCBI nr
Match: XP_022133674.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Momordica charantia])

HSP 1 Score: 238.0 bits (606), Expect = 7.9e-59
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 117 MEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSR 176
           MEGEDIGPEIERGY SGGRDSF RGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSR
Sbjct: 1   MEGEDIGPEIERGYLSGGRDSFGRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSR 60

Query: 177 SWFERDDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDR 230
           SWFERDDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDR
Sbjct: 61  SWFERDDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDR 113

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BLAST of MS010096.1 vs. NCBI nr
Match: XP_038885252.1 (glycine-rich RNA-binding protein RZ1C isoform X1 [Benincasa hispida] >XP_038885253.1 glycine-rich RNA-binding protein RZ1C isoform X1 [Benincasa hispida] >XP_038885254.1 glycine-rich RNA-binding protein RZ1C isoform X1 [Benincasa hispida] >XP_038885255.1 glycine-rich RNA-binding protein RZ1C isoform X1 [Benincasa hispida])

HSP 1 Score: 205.3 bits (521), Expect = 5.7e-49
Identity = 116/235 (49.36%), Postives = 152/235 (64.68%), Query Frame = 0


Query: 1   MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRG 60
           MA K+E+ ++VGGLSW ISER+L++AF+RFG+I++T+++++R   R RG+GFITFA+ RG
Sbjct: 1   MAAKDEYRIFVGGLSWNISERQLENAFNRFGKILETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRRASSGLKMEG 120
           MD+AIREM+GQEF + II+V+KA +P++ G+  EP F  G                    
Sbjct: 61  MDDAIREMHGQEFGERIISVNKA-EPKMEGDDAEPGFRGG-------------------- 120

Query: 121 EDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFSS 180
                    GYSSGGR SF RG RS   D C+ CG  GHWARDCP      GR R SFSS
Sbjct: 121 ---------GYSSGGRASFGRGDRSVGQDECFKCGRPGHWARDCPSVSGGRGRGRSSFSS 180

Query: 181 RSWFERDDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY 231
           RS F+ D   + FG DRDRYVD++Y+GGR   RD R D + DKYG  + +  DRY
Sbjct: 181 RSRFDSDGRGDRFGGDRDRYVDDRYNGGRYGDRD-RFDRRDDKYGSRDRYFDDRY 204

[Close]

BLAST of MS010096.1 vs. NCBI nr
Match: XP_022990423.1 (glycine-rich RNA-binding protein RZ1C [Cucurbita maxima] >XP_022990424.1 glycine-rich RNA-binding protein RZ1C [Cucurbita maxima])

HSP 1 Score: 203.4 bits (516), Expect = 2.2e-48
Identity = 119/239 (49.79%), Postives = 153/239 (64.02%), Query Frame = 0


Query: 1   MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRG 60
           MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T+++++R   R RG+GFITFA+ RG
Sbjct: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRRASSGLKMEG 120
           MD+AIREM+G EF + II+V+KA +P++ G+  EP F  G                    
Sbjct: 61  MDDAIREMHGHEFGERIISVNKA-EPKMEGDDREPGFRGG-------------------- 120

Query: 121 EDIGPEIERGYSSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFS 180
                    GYSSGGR SF RGG RS   D C+ CG  GHWARDCP A    GR R SFS
Sbjct: 121 ---------GYSSGGRASFGRGGDRSVGQDECFKCGRPGHWARDCPSAGGGRGRGRGSFS 180

Query: 181 SRSWFERDDSENSFGEDRDRYVDEQYDGGRDRVR---DHRLDNKQDKYGCYNYHHSDRY 231
           SRS F+ D   + FG DRDRYVD++YDGGRD  R     R D + DKYG  + +  DRY
Sbjct: 181 SRSRFDGDSRGDRFGGDRDRYVDDRYDGGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRY 209

[Close]

BLAST of MS010096.1 vs. NCBI nr
Match: KAG6602289.1 (Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.4 bits (516), Expect = 2.2e-48
Identity = 119/239 (49.79%), Postives = 153/239 (64.02%), Query Frame = 0


Query: 1   MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRG 60
           MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T+++++R   R RG+GFITFA+ RG
Sbjct: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRRASSGLKMEG 120
           MD+AIREM+G EF + II+V+KA +P++ G+  EP F  G                    
Sbjct: 61  MDDAIREMHGHEFGERIISVNKA-EPKMEGDDREPGFRGG-------------------- 120

Query: 121 EDIGPEIERGYSSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFS 180
                    GYSSGGR SF RGG RS   D C+ CG  GHWARDCP A    GR R SFS
Sbjct: 121 ---------GYSSGGRASFGRGGDRSVGQDECFKCGRPGHWARDCPSAGGGRGRGRGSFS 180

Query: 181 SRSWFERDDSENSFGEDRDRYVDEQYDGGRDRVR---DHRLDNKQDKYGCYNYHHSDRY 231
           SRS F+ D   + FG DRDRYVD++YDGGRD  R     R D + DKYG  + +  DRY
Sbjct: 181 SRSRFDGDSRGDRFGGDRDRYVDDRYDGGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRY 209

[Close]

BLAST of MS010096.1 vs. NCBI nr
Match: XP_022961758.1 (glycine-rich RNA-binding protein RZ1C-like [Cucurbita moschata] >XP_022961766.1 glycine-rich RNA-binding protein RZ1C-like [Cucurbita moschata])

HSP 1 Score: 203.4 bits (516), Expect = 2.2e-48
Identity = 119/239 (49.79%), Postives = 153/239 (64.02%), Query Frame = 0


Query: 1   MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRG 60
           MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T+++++R   R RG+GFITFA+ RG
Sbjct: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRRASSGLKMEG 120
           MD+AIREM+G EF + II+V+KA +P++ G+  EP F  G                    
Sbjct: 61  MDDAIREMHGHEFGERIISVNKA-EPKMEGDDREPGFRGG-------------------- 120

Query: 121 EDIGPEIERGYSSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFS 180
                    GYSSGGR SF RGG RS   D C+ CG  GHWARDCP A    GR R SFS
Sbjct: 121 ---------GYSSGGRASFGRGGDRSVGQDECFKCGRPGHWARDCPSAGGGRGRGRGSFS 180

Query: 181 SRSWFERDDSENSFGEDRDRYVDEQYDGGRDRVR---DHRLDNKQDKYGCYNYHHSDRY 231
           SRS F+ D   + FG DRDRYVD++YDGGRD  R     R D + DKYG  + +  DRY
Sbjct: 181 SRSRFDGDSRGDRFGGDRDRYVDDRYDGGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRY 209

[Close]

BLAST of MS010096.1 vs. ExPASy Swiss-Prot
Match: Q8RWN5 (Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE=1 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 4.0e-29
Identity = 93/245 (37.96%), Postives = 137/245 (55.92%), Query Frame = 0


Query: 1   MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRG 60
           MA KE   ++VGGLS  +++R+L+ AFSRFG I+D +++++R   R RG+GFITFA+ R 
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRRASSGLKMEG 120
           MD +IREM+G++F   +I+V++A +P++  +  E   SR    GGRDS            
Sbjct: 61  MDESIREMHGRDFGDRVISVNRA-EPKLGRDDGESHGSR----GGRDS------------ 120

Query: 121 EDIGPEIERGYSSGGRDSFRRGGRS---AVHDVCYNCGCLGHWARDCPLAGRRR----PS 180
                    GYS  G+ SF  GG        D C+ CG +GHWARDCP AG  R      
Sbjct: 121 ---------GYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGG 180

Query: 181 FSSR--SWFERDDSENSFGE-----DRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYH 231
           FSSR  ++   D   + + +     DR+RY+D++YDG        R D++ + Y   + +
Sbjct: 181 FSSRASAYGGSDGRVDRYADRDRYVDRERYIDDRYDGAARYGARDRFDSR-EAYIPRDRY 218

[Close]

BLAST of MS010096.1 vs. ExPASy Swiss-Prot
Match: O22703 (Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.1e-22
Identity = 76/228 (33.33%), Postives = 113/228 (49.56%), Query Frame = 0


Query: 6   EFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAI 65
           E  ++VGGLSW ++ER+L+  F R+G+I + ++++ R   R RG+GFITF + RG D+AI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  REMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRRASSGLKMEGEDIGP 125
           + M+G+E    +I+V+KA +P++ GE V             D L++              
Sbjct: 71  KHMHGRELGNKVISVNKA-EPKVGGEDV-------------DQLKKGG------------ 130

Query: 126 EIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDS 185
               GYSS G+            D C+ C   GHWARDCP  G  R  F  R        
Sbjct: 131 ----GYSSRGK---------GTEDECFKCRRPGHWARDCPSTGDDRERF--RVPLAMRSR 190

Query: 186 ENSFGEDRDRYVDEQYDGGRDRVR--DHRLDNKQDKYGCYNYHHSDRY 231
                  RDRY D   +  R+R R  D  +D ++D+ G   Y + DR+
Sbjct: 191 IGDIDGHRDRYGDRDLEREREREREFDRYMDGRRDRDG-GRYSYRDRF 196

[Close]

BLAST of MS010096.1 vs. ExPASy Swiss-Prot
Match: Q9LIN3 (Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 4.7e-22
Identity = 79/232 (34.05%), Postives = 113/232 (48.71%), Query Frame = 0


Query: 1   MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDRFH-RCRGYGFITFANHRG 60
           M+   E+  ++GGL+W  S+R L+DAF ++G +++ +V++D+F  R RG+GFITF   + 
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRRASSGLKMEG 120
           MD AI  MNG + D   ITV KA QP   G              GRD     + G +  G
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKA-QPHQGG-------------AGRD-----NDGDR--G 120

Query: 121 EDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWF 180
            D G + +R   SGG     RGG       C+ CG  GH+AR+CP    R         F
Sbjct: 121 RDRGYDRDRSRPSGG-----RGGGD-----CFKCGKPGHFARECPSESSR----DGGGRF 180

Query: 181 ERDDSENSFGEDRDRYVDEQYDGGRDR--VRDHRLDNKQDKYGCYNYHHSDR 230
              D   S  +DR    D++Y    DR   +D R  +K D+Y   +  +  R
Sbjct: 181 SSKDDRYSSKDDRYGAKDDRYGAKEDRYGAKDDRYSSKDDRYSSKDDRYGSR 197

[Close]

BLAST of MS010096.1 vs. ExPASy Swiss-Prot
Match: P49310 (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.3e-16
Identity = 52/138 (37.68%), Postives = 73/138 (52.90%), Query Frame = 0


Query: 6   EFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAI 65
           E+  +VGGL+W   +R L+ AFS++G ++D+++I DR   R RG+GF+TF + + M +AI
Sbjct: 7   EYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66

Query: 66  REMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRRASSGLKMEGEDIGP 125
             MNGQ+ D   ITV++A+     G         GY SGG         G    G     
Sbjct: 67  EGMNGQDLDGRSITVNEAQSRGSGGGGGGRGGGGGYRSGGGGGYGGGGGGYGGGGR---- 126

Query: 126 EIERGYSSGGRDSFRRGG 143
             E GYS GG     RGG
Sbjct: 127 --EGGYSGGGGGYSSRGG 138

[Close]

BLAST of MS010096.1 vs. ExPASy Swiss-Prot
Match: Q03251 (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana OX=3702 GN=RBG8 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.1e-15
Identity = 56/155 (36.13%), Postives = 77/155 (49.68%), Query Frame = 0


Query: 6   EFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAI 65
           E+  +VGGL+W  ++ +LQ  FS+FG +ID+++I DR   R RG+GF+TF + + M +AI
Sbjct: 5   EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64

Query: 66  REMNGQEFDQGIITVSKAKQ-----------------PEIRGEYVEPCFSRGYLSGGRDS 125
            EMNG+E D  +ITV++A+                      G         GY  GG   
Sbjct: 65  EEMNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGGYRSGGGGGYSGGGGGGYSGGGGGG 124

Query: 126 LRRASSGLKMEGEDIGPEIERGYSSGGRDSFRRGG 143
             R S G    G   G    RGY  GGR   R GG
Sbjct: 125 YERRSGGYGSGGGGGG----RGYGGGGR---REGG 152

[Close]

BLAST of MS010096.1 vs. ExPASy TrEMBL
Match: A0A6J1BWP1 (zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Momordica charantia OX=3673 GN=LOC111006199 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 3.8e-59
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 117 MEGEDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSR 176
           MEGEDIGPEIERGY SGGRDSF RGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSR
Sbjct: 1   MEGEDIGPEIERGYLSGGRDSFGRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSR 60

Query: 177 SWFERDDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDR 230
           SWFERDDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDR
Sbjct: 61  SWFERDDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDR 113

[Close]

BLAST of MS010096.1 vs. ExPASy TrEMBL
Match: A0A6J1JS04 (glycine-rich RNA-binding protein RZ1C OS=Cucurbita maxima OX=3661 GN=LOC111487287 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.0e-48
Identity = 119/239 (49.79%), Postives = 153/239 (64.02%), Query Frame = 0


Query: 1   MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRG 60
           MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T+++++R   R RG+GFITFA+ RG
Sbjct: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRRASSGLKMEG 120
           MD+AIREM+G EF + II+V+KA +P++ G+  EP F  G                    
Sbjct: 61  MDDAIREMHGHEFGERIISVNKA-EPKMEGDDREPGFRGG-------------------- 120

Query: 121 EDIGPEIERGYSSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFS 180
                    GYSSGGR SF RGG RS   D C+ CG  GHWARDCP A    GR R SFS
Sbjct: 121 ---------GYSSGGRASFGRGGDRSVGQDECFKCGRPGHWARDCPSAGGGRGRGRGSFS 180

Query: 181 SRSWFERDDSENSFGEDRDRYVDEQYDGGRDRVR---DHRLDNKQDKYGCYNYHHSDRY 231
           SRS F+ D   + FG DRDRYVD++YDGGRD  R     R D + DKYG  + +  DRY
Sbjct: 181 SRSRFDGDSRGDRFGGDRDRYVDDRYDGGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRY 209

[Close]

BLAST of MS010096.1 vs. ExPASy TrEMBL
Match: A0A6J1HB93 (glycine-rich RNA-binding protein RZ1C-like OS=Cucurbita moschata OX=3662 GN=LOC111462429 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.0e-48
Identity = 119/239 (49.79%), Postives = 153/239 (64.02%), Query Frame = 0


Query: 1   MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRG 60
           MA K+E+ ++VGGLSW +SEREL++AFSR+G+II+T+++++R   R RG+GFITFA+ RG
Sbjct: 1   MAAKDEYRIFVGGLSWNVSERELENAFSRYGKIIETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRRASSGLKMEG 120
           MD+AIREM+G EF + II+V+KA +P++ G+  EP F  G                    
Sbjct: 61  MDDAIREMHGHEFGERIISVNKA-EPKMEGDDREPGFRGG-------------------- 120

Query: 121 EDIGPEIERGYSSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFS 180
                    GYSSGGR SF RGG RS   D C+ CG  GHWARDCP A    GR R SFS
Sbjct: 121 ---------GYSSGGRASFGRGGDRSVGQDECFKCGRPGHWARDCPSAGGGRGRGRGSFS 180

Query: 181 SRSWFERDDSENSFGEDRDRYVDEQYDGGRDRVR---DHRLDNKQDKYGCYNYHHSDRY 231
           SRS F+ D   + FG DRDRYVD++YDGGRD  R     R D + DKYG  + +  DRY
Sbjct: 181 SRSRFDGDSRGDRFGGDRDRYVDDRYDGGRDGGRYGDRDRFDRRDDKYGSRDRYFDDRY 209

[Close]

BLAST of MS010096.1 vs. ExPASy TrEMBL
Match: A0A6J1BW89 (glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111006270 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 2.0e-47
Identity = 115/236 (48.73%), Postives = 151/236 (63.98%), Query Frame = 0


Query: 1   MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRG 60
           MA K+E+ ++VGGLSW ISER+L++AFSR+G+I++T+++++R   R RG+GFITFA+ RG
Sbjct: 1   MAGKDEYRIFVGGLSWNISERQLENAFSRYGKILETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRRASSGLKMEG 120
           MD+AIREM+G+E  +  I+V+KA +P++ G+  EP F  G                    
Sbjct: 61  MDDAIREMHGRELGERTISVNKA-EPKMEGDDGEPGFRGG-------------------- 120

Query: 121 EDIGPEIERGYSSGGRDSFRRGG-RSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFS 180
                    GYSSGGR SF RGG RS   D C+ CG  GHWARDCP      GR R SFS
Sbjct: 121 ---------GYSSGGRPSFGRGGDRSVGQDECFKCGRPGHWARDCPSVGGGRGRGRGSFS 180

Query: 181 SRSWFERDDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY 231
           SRS F+ D   + FG DRDRYVD++YDGGR   RDH  D + DKYG  + +  DRY
Sbjct: 181 SRSRFDSDSRGDRFGGDRDRYVDDRYDGGRYGDRDH-FDRRDDKYGSRDRYFDDRY 205

[Close]

BLAST of MS010096.1 vs. ExPASy TrEMBL
Match: A0A0A0LQB5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G324460 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 5.3e-45
Identity = 113/236 (47.88%), Postives = 148/236 (62.71%), Query Frame = 0


Query: 1   MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRG 60
           MA K+E+ ++VGGLSW ISER+L++AF RFG++++T+++++R   R RG+GFITFA+ RG
Sbjct: 1   MASKDEYRIFVGGLSWNISERQLENAFIRFGKMLETQIMLERDTGRPRGFGFITFADRRG 60

Query: 61  MDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRRASSGLKMEG 120
           MD+AIREM+GQE  + II+V+KA +P++ G+  E  F  G                    
Sbjct: 61  MDDAIREMHGQELGERIISVNKA-EPKMEGDDTEQGFRGG-------------------- 120

Query: 121 EDIGPEIERGYSSGGRDSFRRG-GRSAVHDVCYNCGCLGHWARDCPLA----GRRRPSFS 180
                    GYSSGGR SF RG  RS   D C+ CG  GHWARDCP      G  R SFS
Sbjct: 121 ---------GYSSGGRASFGRGKDRSVGQDECFKCGRPGHWARDCPSVGGGRGGGRGSFS 180

Query: 181 SRSWFERDDSENSFGEDRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYHHSDRY 231
           SRS F+ D   + FG DRDRYVDE+Y+GGR   RD R D + DKYG  + +  DRY
Sbjct: 181 SRSRFDSDGRGDRFGGDRDRYVDERYNGGRYGDRD-RFDRRDDKYGSRDRYFDDRY 205

[Close]

BLAST of MS010096.1 vs. TAIR 10
Match: AT5G04280.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 129.8 bits (325), Expect = 2.8e-30
Identity = 93/245 (37.96%), Postives = 137/245 (55.92%), Query Frame = 0


Query: 1   MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRG 60
           MA KE   ++VGGLS  +++R+L+ AFSRFG I+D +++++R   R RG+GFITFA+ R 
Sbjct: 1   MAAKEGSRIFVGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFITFADRRA 60

Query: 61  MDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRRASSGLKMEG 120
           MD +IREM+G++F   +I+V++A +P++  +  E   SR    GGRDS            
Sbjct: 61  MDESIREMHGRDFGDRVISVNRA-EPKLGRDDGESHGSR----GGRDS------------ 120

Query: 121 EDIGPEIERGYSSGGRDSFRRGGRS---AVHDVCYNCGCLGHWARDCPLAGRRR----PS 180
                    GYS  G+ SF  GG        D C+ CG +GHWARDCP AG  R      
Sbjct: 121 ---------GYSIAGKGSFGGGGGGGGRVGEDECFKCGRVGHWARDCPSAGGGRGGPVGG 180

Query: 181 FSSR--SWFERDDSENSFGE-----DRDRYVDEQYDGGRDRVRDHRLDNKQDKYGCYNYH 231
           FSSR  ++   D   + + +     DR+RY+D++YDG        R D++ + Y   + +
Sbjct: 181 FSSRASAYGGSDGRVDRYADRDRYVDRERYIDDRYDGAARYGARDRFDSR-EAYIPRDRY 218

[Close]

BLAST of MS010096.1 vs. TAIR 10
Match: AT1G60650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-23
Identity = 76/228 (33.33%), Postives = 113/228 (49.56%), Query Frame = 0


Query: 6   EFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAI 65
           E  ++VGGLSW ++ER+L+  F R+G+I + ++++ R   R RG+GFITF + RG D+AI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  REMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRRASSGLKMEGEDIGP 125
           + M+G+E    +I+V+KA +P++ GE V             D L++              
Sbjct: 71  KHMHGRELGNKVISVNKA-EPKVGGEDV-------------DQLKKGG------------ 130

Query: 126 EIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDS 185
               GYSS G+            D C+ C   GHWARDCP  G  R  F  R        
Sbjct: 131 ----GYSSRGK---------GTEDECFKCRRPGHWARDCPSTGDDRERF--RVPLAMRSR 190

Query: 186 ENSFGEDRDRYVDEQYDGGRDRVR--DHRLDNKQDKYGCYNYHHSDRY 231
                  RDRY D   +  R+R R  D  +D ++D+ G   Y + DR+
Sbjct: 191 IGDIDGHRDRYGDRDLEREREREREFDRYMDGRRDRDG-GRYSYRDRF 196

[Close]

BLAST of MS010096.1 vs. TAIR 10
Match: AT1G60650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-23
Identity = 76/228 (33.33%), Postives = 113/228 (49.56%), Query Frame = 0


Query: 6   EFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAI 65
           E  ++VGGLSW ++ER+L+  F R+G+I + ++++ R   R RG+GFITF + RG D+AI
Sbjct: 11  ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70

Query: 66  REMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRRASSGLKMEGEDIGP 125
           + M+G+E    +I+V+KA +P++ GE V             D L++              
Sbjct: 71  KHMHGRELGNKVISVNKA-EPKVGGEDV-------------DQLKKGG------------ 130

Query: 126 EIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWFERDDS 185
               GYSS G+            D C+ C   GHWARDCP  G  R  F  R        
Sbjct: 131 ----GYSSRGK---------GTEDECFKCRRPGHWARDCPSTGDDRERF--RVPLAMRSR 190

Query: 186 ENSFGEDRDRYVDEQYDGGRDRVR--DHRLDNKQDKYGCYNYHHSDRY 231
                  RDRY D   +  R+R R  D  +D ++D+ G   Y + DR+
Sbjct: 191 IGDIDGHRDRYGDRDLEREREREREFDRYMDGRRDRDG-GRYSYRDRF 196

[Close]

BLAST of MS010096.1 vs. TAIR 10
Match: AT3G26420.1 (RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain )

HSP 1 Score: 106.3 bits (264), Expect = 3.3e-23
Identity = 79/232 (34.05%), Postives = 113/232 (48.71%), Query Frame = 0


Query: 1   MARKEEFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDRFH-RCRGYGFITFANHRG 60
           M+   E+  ++GGL+W  S+R L+DAF ++G +++ +V++D+F  R RG+GFITF   + 
Sbjct: 1   MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60

Query: 61  MDNAIREMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRRASSGLKMEG 120
           MD AI  MNG + D   ITV KA QP   G              GRD     + G +  G
Sbjct: 61  MDEAIAAMNGMDLDGRTITVDKA-QPHQGG-------------AGRD-----NDGDR--G 120

Query: 121 EDIGPEIERGYSSGGRDSFRRGGRSAVHDVCYNCGCLGHWARDCPLAGRRRPSFSSRSWF 180
            D G + +R   SGG     RGG       C+ CG  GH+AR+CP    R         F
Sbjct: 121 RDRGYDRDRSRPSGG-----RGGGD-----CFKCGKPGHFARECPSESSR----DGGGRF 180

Query: 181 ERDDSENSFGEDRDRYVDEQYDGGRDR--VRDHRLDNKQDKYGCYNYHHSDR 230
              D   S  +DR    D++Y    DR   +D R  +K D+Y   +  +  R
Sbjct: 181 SSKDDRYSSKDDRYGAKDDRYGAKEDRYGAKDDRYSSKDDRYSSKDDRYGSR 197

[Close]

BLAST of MS010096.1 vs. TAIR 10
Match: AT4G39260.2 (cold, circadian rhythm, and RNA binding 1 )

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-17
Identity = 54/138 (39.13%), Postives = 76/138 (55.07%), Query Frame = 0


Query: 6   EFEVYVGGLSWCISERELQDAFSRFGRIIDTRVIIDR-FHRCRGYGFITFANHRGMDNAI 65
           E+  +VGGL+W  ++ +LQ  FS+FG +ID+++I DR   R RG+GF+TF + + M +AI
Sbjct: 5   EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64

Query: 66  REMNGQEFDQGIITVSKAKQPEIRGEYVEPCFSRGYLSGGRDSLRRASSGLKMEGEDIGP 125
            EMNG+E D  +ITV++A+             SRG  SGG    R  S G    G     
Sbjct: 65  EEMNGKELDGRVITVNEAQ-------------SRG--SGGGGGGRGGSGGGYRSGGG--- 121

Query: 126 EIERGYSSGGRDSFRRGG 143
               GYS GG   +  GG
Sbjct: 125 ---GGYSGGGGGGYSGGG 121

The following BLAST results are available for this feature:

BLAST of MS010096.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133674.1	7.9e-59	98.23	zinc finger BED domain-containing protein RICESLEEPER 2-like [Momordica charanti...	[more]
XP_038885252.1	5.7e-49	49.36	glycine-rich RNA-binding protein RZ1C isoform X1 [Benincasa hispida] >XP_0388852...	[more]
XP_022990423.1	2.2e-48	49.79	glycine-rich RNA-binding protein RZ1C [Cucurbita maxima] >XP_022990424.1 glycine...	[more]
KAG6602289.1	2.2e-48	49.79	Glycine-rich RNA-binding protein RZ1C, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_022961758.1	2.2e-48	49.79	glycine-rich RNA-binding protein RZ1C-like [Cucurbita moschata] >XP_022961766.1 ...	[more]

BLAST of MS010096.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWN5	4.0e-29	37.96	Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana OX=3702 GN=RZ1C PE...	[more]
O22703	2.1e-22	33.33	Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana OX=3702 GN=RZ1B PE...	[more]
Q9LIN3	4.7e-22	34.05	Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana OX=3702 GN=RZ1A PE...	[more]
P49310	2.3e-16	37.68	Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba OX=3728 PE=2 SV=1	[more]
Q03251	1.1e-15	36.13	Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana OX=3702 GN=RBG8 PE=1 ...	[more]

BLAST of MS010096.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BWP1	3.8e-59	98.23	zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Momordica charan...	[more]
A0A6J1JS04	1.0e-48	49.79	glycine-rich RNA-binding protein RZ1C OS=Cucurbita maxima OX=3661 GN=LOC11148728...	[more]
A0A6J1HB93	1.0e-48	49.79	glycine-rich RNA-binding protein RZ1C-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1BW89	2.0e-47	48.73	glycine-rich RNA-binding protein RZ1C-like isoform X1 OS=Momordica charantia OX=...	[more]
A0A0A0LQB5	5.3e-45	47.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G324460 PE=4 SV=1	[more]

BLAST of MS010096.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04280.1	2.8e-30	37.96	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.1	1.5e-23	33.33	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT1G60650.2	1.5e-23	33.33	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT3G26420.1	3.3e-23	34.05	RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like...	[more]
AT4G39260.2	2.7e-17	39.13	cold, circadian rhythm, and RNA binding 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 149..165 e-value: 5.3E-4 score: 29.3
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 149..164 e-value: 2.5E-7 score: 30.5
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 150..164 score: 10.542789
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..80 e-value: 2.0E-21 score: 87.2
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..74 e-value: 6.7E-18 score: 64.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..84 score: 17.404068
None	No IPR available	GENE3D	4.10.60.10		coord: 147..193 e-value: 1.9E-7 score: 33.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..209
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..230
None	No IPR available	PANTHER	PTHR15241:SF294	GLYCINE-RICH RNA-BINDING PROTEIN RZ1B-LIKE	coord: 1..230
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..146 e-value: 1.2E-23 score: 85.7
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 131..171
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..111

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS010096	MS010096	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS010096.1-cds	MS010096.1-cds-scaffold779:615791..615901	CDS
MS010096.1-cds	MS010096.1-cds-scaffold779:616528..617106	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS010096.1	MS010096.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding