MS009975.1 (mRNA) Bitter gourd (TR) v1

Overview
NameMS009975.1
TypemRNA
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionCCHC-type domain-containing protein
Locationscaffold223: 1754 .. 1924 (-)
Sequence length171
RNA-Seq ExpressionMS009975.1
SyntenyMS009975.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGGGAAGTTTGAAAAGGTGGATTCAGATGAGGAAGGAAAGTGTTGGGGACAATCTTTAAGAGTTAGAATTCAGATTGACGTCACTAAGCCTTTACGAAGAGGAGTTCTGATTAAGATCGGAACTATGGCTGACGAACGATGGATCCCCATAACCTACGAGAAGCTAACA

mRNA sequence

GTTGGGAAGTTTGAAAAGGTGGATTCAGATGAGGAAGGAAAGTGTTGGGGACAATCTTTAAGAGTTAGAATTCAGATTGACGTCACTAAGCCTTTACGAAGAGGAGTTCTGATTAAGATCGGAACTATGGCTGACGAACGATGGATCCCCATAACCTACGAGAAGCTAACA

Coding sequence (CDS)

GTTGGGAAGTTTGAAAAGGTGGATTCAGATGAGGAAGGAAAGTGTTGGGGACAATCTTTAAGAGTTAGAATTCAGATTGACGTCACTAAGCCTTTACGAAGAGGAGTTCTGATTAAGATCGGAACTATGGCTGACGAACGATGGATCCCCATAACCTACGAGAAGCTAACA

Protein sequence

VGKFEKVDSDEEGKCWGQSLRVRIQIDVTKPLRRGVLIKIGTMADERWIPITYEKLT
Homology
BLAST of MS009975.1 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 4.6e-08
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 1   VGKFEKVDSDEEGKCWGQSLRVRIQIDVTKPLRRGVLIKIGTMADERWIPITYEKL 57
           +G F  VD +E+G  WG SLR+R+ ID+TKPLRRG+ I I       WIPI YE+L
Sbjct: 152 IGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERL 207

BLAST of MS009975.1 vs. NCBI nr
Match: XP_039795238.1 (uncharacterized protein LOC120660688 [Panicum virgatum])

HSP 1 Score: 66.6 bits (161), Expect = 7.8e-08
Identity = 28/56 (50.00%), Postives = 37/56 (66.07%), Query Frame = 0

Query: 1  VGKFEKVDSDEEGKCWGQSLRVRIQIDVTKPLRRGVLIKIGTMADERWIPITYEKL 57
          +GK EKVD+D  G+ WG  LR +++ID+TKPLRRGV I       + W  + YEKL
Sbjct: 27 IGKVEKVDADSNGRAWGPYLRAKVRIDITKPLRRGVSIFFVKRQKKEWYEVQYEKL 82

BLAST of MS009975.1 vs. NCBI nr
Match: XP_024924622.1 (uncharacterized protein LOC112489822 [Ziziphus jujuba])

HSP 1 Score: 63.2 bits (152), Expect = 8.6e-07
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 0

Query: 1   VGKFEKVDSDEEGKCWGQSLRVRIQ--IDVTKPLRRGVLIKIGTMADERWIPITYEKL 57
           +G    VDSDEEG CWG+ +RVR++  ID+ KPLRRG+LI+    AD  W+   YE+L
Sbjct: 95  LGDLLSVDSDEEGHCWGKYMRVRVRVNIDIQKPLRRGMLIRFDG-ADSFWVEFQYERL 151

BLAST of MS009975.1 vs. NCBI nr
Match: XP_039815364.1 (uncharacterized protein LOC120678302 [Panicum virgatum])

HSP 1 Score: 63.2 bits (152), Expect = 8.6e-07
Identity = 27/56 (48.21%), Postives = 41/56 (73.21%), Query Frame = 0

Query: 1   VGKFEKVDSDEEGKCWGQSLRVRIQIDVTKPLRRGVLIKIGTMADERWIPITYEKL 57
           +G+F +VD + +    G+ LRV+++I++ KPLRRG++I +G  A ERW PITYE L
Sbjct: 85  LGEFMEVDLENDEFAAGRFLRVKVRIEIEKPLRRGIMIDVGEGAQERWCPITYEFL 140

BLAST of MS009975.1 vs. NCBI nr
Match: XP_039827601.1 (uncharacterized protein LOC120689378 [Panicum virgatum])

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-06
Identity = 27/56 (48.21%), Postives = 41/56 (73.21%), Query Frame = 0

Query: 1   VGKFEKVDSDEEGKCWGQSLRVRIQIDVTKPLRRGVLIKIGTMADERWIPITYEKL 57
           +G+F +VD + +    G+ LRV+++I++ KPLRRG++I +G  A ERW PITYE L
Sbjct: 148 LGEFMEVDLENDVFAAGRFLRVKVRIEIEKPLRRGIMIDVGEGAQERWCPITYEFL 203

BLAST of MS009975.1 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.2e-08
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 1   VGKFEKVDSDEEGKCWGQSLRVRIQIDVTKPLRRGVLIKIGTMADERWIPITYEKL 57
           +G F  VD +E+G  WG SLR+R+ ID+TKPLRRG+ I I       WIPI YE+L
Sbjct: 152 IGNFVDVDCNEKGFSWGASLRIRVLIDITKPLRRGIKINIDGPMGGCWIPIQYERL 207

BLAST of MS009975.1 vs. ExPASy TrEMBL
Match: A0A803P119 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.4e-07
Identity = 28/56 (50.00%), Postives = 39/56 (69.64%), Query Frame = 0

Query: 1   VGKFEKVDSDEEGKCWGQSLRVRIQIDVTKPLRRGVLIKIGTMADERWIPITYEKL 57
           VG+F KVD D   + WG  +R+RI +DVT+PL RG L+KI  + D+ W+ + YEKL
Sbjct: 479 VGEFLKVDDDSLEEGWGPFMRIRISLDVTQPLLRGTLLKITGLVDDLWVILKYEKL 534

BLAST of MS009975.1 vs. ExPASy TrEMBL
Match: A0A6P6FRB5 (uncharacterized protein LOC112489822 OS=Ziziphus jujuba OX=326968 GN=LOC112489822 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.2e-07
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 0

Query: 1   VGKFEKVDSDEEGKCWGQSLRVRIQ--IDVTKPLRRGVLIKIGTMADERWIPITYEKL 57
           +G    VDSDEEG CWG+ +RVR++  ID+ KPLRRG+LI+    AD  W+   YE+L
Sbjct: 95  LGDLLSVDSDEEGHCWGKYMRVRVRVNIDIQKPLRRGMLIRFDG-ADSFWVEFQYERL 151

BLAST of MS009975.1 vs. ExPASy TrEMBL
Match: A0A803QQH9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.4e-07
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 0

Query: 1   VGKFEKVDSDEEGKCWGQSLRVRIQIDVTKPLRRGVLIKIGTMADERWIPITYEKL 57
           +GKFE V  D   + WG  LR+R+ +DVTKPL+RG +I +G + D+ W+   YE+L
Sbjct: 71  IGKFEDVFEDSLNEGWGPFLRIRVLMDVTKPLKRGRMISLGHVKDKFWVDFRYERL 126

BLAST of MS009975.1 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.3e-07
Identity = 25/56 (44.64%), Postives = 37/56 (66.07%), Query Frame = 0

Query: 1   VGKFEKVDSDEEGKCWGQSLRVRIQIDVTKPLRRGVLIKIGTMADERWIPITYEKL 57
           +G FE+ D D+    WG +LRVR+ +D++KPLRRG+ + +       WIPI YE+L
Sbjct: 153 LGGFEEADCDDLNPDWGSNLRVRVMLDISKPLRRGIKLNLDGPIGGAWIPIQYERL 208

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156185.14.6e-0853.57uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_039795238.17.8e-0850.00uncharacterized protein LOC120660688 [Panicum virgatum][more]
XP_024924622.18.6e-0751.72uncharacterized protein LOC112489822 [Ziziphus jujuba][more]
XP_039815364.18.6e-0748.21uncharacterized protein LOC120678302 [Panicum virgatum][more]
XP_039827601.11.1e-0648.21uncharacterized protein LOC120689378 [Panicum virgatum][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DU552.2e-0853.57uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A803P1191.4e-0750.00Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A6P6FRB54.2e-0751.72uncharacterized protein LOC112489822 OS=Ziziphus jujuba OX=326968 GN=LOC11248982... [more]
A0A803QQH95.4e-0746.43Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A6J1DX309.3e-0744.64uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MS009975MS009975gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MS009975.1-cdsMS009975.1-cds-scaffold223:1754..1924CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MS009975.1MS009975.1-proteinpolypeptide