MS009805.1 (mRNA) Bitter gourd (TR) v1

Overview
NameMS009805.1
TypemRNA
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionMyb_DNA-bind_3 domain-containing protein
Locationscaffold173: 417725 .. 417850 (+)
Sequence length126
RNA-Seq ExpressionMS009805.1
SyntenyMS009805.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAGGAAGATGTAGTGTTGGTGAGCGCACTTCTAGAACTAAGTCATAATAGTTTATGGCGAGCAGAAAATGGATTCAATAATGGGTATTTGAATCAAATTGAACAATTCATGCGGGAAAAATTACCT

mRNA sequence

GAGGAAGATGTAGTGTTGGTGAGCGCACTTCTAGAACTAAGTCATAATAGTTTATGGCGAGCAGAAAATGGATTCAATAATGGGTATTTGAATCAAATTGAACAATTCATGCGGGAAAAATTACCT

Coding sequence (CDS)

GAGGAAGATGTAGTGTTGGTGAGCGCACTTCTAGAACTAAGTCATAATAGTTTATGGCGAGCAGAAAATGGATTCAATAATGGGTATTTGAATCAAATTGAACAATTCATGCGGGAAAAATTACCT

Protein sequence

EEDVVLVSALLELSHNSLWRAENGFNNGYLNQIEQFMREKLP
Homology
BLAST of MS009805.1 vs. NCBI nr
Match: XP_039141103.1 (uncharacterized protein LOC120278225 [Dioscorea cayenensis subsp. rotundata])

HSP 1 Score: 66.2 bits (160), Expect = 7.5e-08
Identity = 28/42 (66.67%), Postives = 36/42 (85.71%), Query Frame = 0

Query: 1  EEDVVLVSALLELSHNSLWRAENGFNNGYLNQIEQFMREKLP 43
          EED  L+ AL+ELS N+LWRAENGF NGYLNQ+E+ ++EK+P
Sbjct: 35 EEDKALIDALVELSTNTLWRAENGFRNGYLNQLEKMVKEKIP 76

BLAST of MS009805.1 vs. NCBI nr
Match: XP_039135802.1 (uncharacterized protein LOC120273238 [Dioscorea cayenensis subsp. rotundata])

HSP 1 Score: 61.2 bits (147), Expect = 2.4e-06
Identity = 26/42 (61.90%), Postives = 34/42 (80.95%), Query Frame = 0

Query: 1   EEDVVLVSALLELSHNSLWRAENGFNNGYLNQIEQFMREKLP 43
           +ED  L+ AL+ELS N +WRAENGF NGYL Q+E+ ++EKLP
Sbjct: 66  DEDKALIDALIELSTNPMWRAENGFRNGYLVQLERMIKEKLP 107

BLAST of MS009805.1 vs. NCBI nr
Match: KAF4370821.1 (hypothetical protein F8388_011804 [Cannabis sativa])

HSP 1 Score: 57.4 bits (137), Expect = 3.5e-05
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 2  EDVVLVSALLELSHNSLWRAENGFNNGYLNQIEQFMREKLP 43
          +D VL+  LLELS NS WRA++GF NGYL Q+E  + EKLP
Sbjct: 23 QDSVLIECLLELSQNSTWRADSGFKNGYLQQMEIMLEEKLP 63

BLAST of MS009805.1 vs. NCBI nr
Match: KAF4364769.1 (hypothetical protein F8388_018445 [Cannabis sativa])

HSP 1 Score: 57.4 bits (137), Expect = 3.5e-05
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 2  EDVVLVSALLELSHNSLWRAENGFNNGYLNQIEQFMREKLP 43
          +D VL+  LLELS NS WRA++GF NGYL Q+E  + EKLP
Sbjct: 24 QDSVLIECLLELSQNSTWRADSGFKNGYLQQMEIMLEEKLP 64

BLAST of MS009805.1 vs. NCBI nr
Match: KAF4357449.1 (hypothetical protein G4B88_008637 [Cannabis sativa])

HSP 1 Score: 57.4 bits (137), Expect = 3.5e-05
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 2  EDVVLVSALLELSHNSLWRAENGFNNGYLNQIEQFMREKLP 43
          +D VL+  LLELS NS WRA++GF NGYL Q+E  + EKLP
Sbjct: 32 QDSVLIECLLELSQNSTWRADSGFKNGYLQQMEIMLEEKLP 72

BLAST of MS009805.1 vs. ExPASy TrEMBL
Match: A0A7J6F6Q2 (Myb_DNA-bind_3 domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_018830 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-05
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 2  EDVVLVSALLELSHNSLWRAENGFNNGYLNQIEQFMREKLP 43
          +D VL+  LLELS NS WRA++GF NGYL Q+E  + EKLP
Sbjct: 29 QDSVLIECLLELSQNSTWRADSGFKNGYLQQMEIMLEEKLP 69

BLAST of MS009805.1 vs. ExPASy TrEMBL
Match: A0A7J6I8B4 (Myb_DNA-bind_3 domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_002419 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-05
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 2  EDVVLVSALLELSHNSLWRAENGFNNGYLNQIEQFMREKLP 43
          +D VL+  LLELS NS WRA++GF NGYL Q+E  + EKLP
Sbjct: 23 QDSVLIECLLELSQNSTWRADSGFKNGYLQQMEIMLEEKLP 63

BLAST of MS009805.1 vs. ExPASy TrEMBL
Match: A0A7J6F4F0 (Myb_DNA-bind_3 domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_018445 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-05
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 2  EDVVLVSALLELSHNSLWRAENGFNNGYLNQIEQFMREKLP 43
          +D VL+  LLELS NS WRA++GF NGYL Q+E  + EKLP
Sbjct: 24 QDSVLIECLLELSQNSTWRADSGFKNGYLQQMEIMLEEKLP 64

BLAST of MS009805.1 vs. ExPASy TrEMBL
Match: A0A7J6FJD5 (Myb_DNA-bind_3 domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_011804 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-05
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 2  EDVVLVSALLELSHNSLWRAENGFNNGYLNQIEQFMREKLP 43
          +D VL+  LLELS NS WRA++GF NGYL Q+E  + EKLP
Sbjct: 23 QDSVLIECLLELSQNSTWRADSGFKNGYLQQMEIMLEEKLP 63

BLAST of MS009805.1 vs. ExPASy TrEMBL
Match: A0A7J6EI99 (Myb_DNA-bind_3 domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_008637 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-05
Identity = 25/41 (60.98%), Postives = 31/41 (75.61%), Query Frame = 0

Query: 2  EDVVLVSALLELSHNSLWRAENGFNNGYLNQIEQFMREKLP 43
          +D VL+  LLELS NS WRA++GF NGYL Q+E  + EKLP
Sbjct: 32 QDSVLIECLLELSQNSTWRADSGFKNGYLQQMEIMLEEKLP 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_039141103.17.5e-0866.67uncharacterized protein LOC120278225 [Dioscorea cayenensis subsp. rotundata][more]
XP_039135802.12.4e-0661.90uncharacterized protein LOC120273238 [Dioscorea cayenensis subsp. rotundata][more]
KAF4370821.13.5e-0560.98hypothetical protein F8388_011804 [Cannabis sativa][more]
KAF4364769.13.5e-0560.98hypothetical protein F8388_018445 [Cannabis sativa][more]
KAF4357449.13.5e-0560.98hypothetical protein G4B88_008637 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A7J6F6Q21.7e-0560.98Myb_DNA-bind_3 domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_018... [more]
A0A7J6I8B41.7e-0560.98Myb_DNA-bind_3 domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_002... [more]
A0A7J6F4F01.7e-0560.98Myb_DNA-bind_3 domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_018... [more]
A0A7J6FJD51.7e-0560.98Myb_DNA-bind_3 domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_011... [more]
A0A7J6EI991.7e-0560.98Myb_DNA-bind_3 domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_008... [more]
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MS009805MS009805gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MS009805.1-cdsMS009805.1-cds-scaffold173:417725..417850CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MS009805.1MS009805.1-proteinpolypeptide