MS009504.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS009504.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold813: 1786052 .. 1786360 (-)
Sequence length	309
RNA-Seq Expression	MS009504.1
Synteny	MS009504.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTGTCTCGGAATATTGTTTGGCTGCAAAACATCTCGCTCCCCCACTGACTACCTTCTCTCGGCTTTACTCCTCATTGCCATTCTTTCCTCTCTCCGTCTCCTCTGCTTCCTCATTTCCCACTTCCGTCGCCGTCGCCGTAGTCGGAATGATCAGAATTCTGATCATTACGACCCCGGCCTCGAACTTCAGCCCCAGAACAACGTCGCCCATCTTCGCCAGAATCTCCAACCAAGACCTCTCCCACCAAACAAGCTCCTCAACTCCTCACCTGCAGATGCTCCTCTTCCTCTTTCTGCTTTCGAG

mRNA sequence

ATGGTTTGTCTCGGAATATTGTTTGGCTGCAAAACATCTCGCTCCCCCACTGACTACCTTCTCTCGGCTTTACTCCTCATTGCCATTCTTTCCTCTCTCCGTCTCCTCTGCTTCCTCATTTCCCACTTCCGTCGCCGTCGCCGTAGTCGGAATGATCAGAATTCTGATCATTACGACCCCGGCCTCGAACTTCAGCCCCAGAACAACGTCGCCCATCTTCGCCAGAATCTCCAACCAAGACCTCTCCCACCAAACAAGCTCCTCAACTCCTCACCTGCAGATGCTCCTCTTCCTCTTTCTGCTTTCGAG

Coding sequence (CDS)

ATGGTTTGTCTCGGAATATTGTTTGGCTGCAAAACATCTCGCTCCCCCACTGACTACCTTCTCTCGGCTTTACTCCTCATTGCCATTCTTTCCTCTCTCCGTCTCCTCTGCTTCCTCATTTCCCACTTCCGTCGCCGTCGCCGTAGTCGGAATGATCAGAATTCTGATCATTACGACCCCGGCCTCGAACTTCAGCCCCAGAACAACGTCGCCCATCTTCGCCAGAATCTCCAACCAAGACCTCTCCCACCAAACAAGCTCCTCAACTCCTCACCTGCAGATGCTCCTCTTCCTCTTTCTGCTTTCGAG

Protein sequence

MVCLGILFGCKTSRSPTDYLLSALLLIAILSSLRLLCFLISHFRRRRRSRNDQNSDHYDPGLELQPQNNVAHLRQNLQPRPLPPNKLLNSSPADAPLPLSAFE

Homology

[Close]

BLAST of MS009504.1 vs. NCBI nr
Match: TYK04011.1 (hypothetical protein E5676_scaffold347G002090 [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 70/102 (68.63%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MVCLGILFGCKTSRSPTDYLLSALLLIAILSSLRLLCFLISHFRRRRRSRNDQNSDHYDP 60
           MVCLGILFGCK SRSPTDYLLSALLLIAILSSLRLLC+L+S F +RRR     N+ H DP
Sbjct: 61  MVCLGILFGCKRSRSPTDYLLSALLLIAILSSLRLLCYLVSRFLKRRR-----NNQHPDP 120

Query: 61  GLELQPQNNVAHLRQNLQPRPLPPNKLLNSSPADAPLPLSAF 103
             E+QPQ +VAHL    QP P+P NK L  +PADA LPL+AF
Sbjct: 121 TSEVQPQTDVAHLH---QPTPMPDNKFL--TPADA-LPLAAF 151

[Close]

BLAST of MS009504.1 vs. NCBI nr
Match: KGN45392.1 (hypothetical protein Csa_016516 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-21
Identity = 67/102 (65.69%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MVCLGILFGCKTSRSPTDYLLSALLLIAILSSLRLLCFLISHFRRRRRSRNDQNSDHYDP 60
           MVCLGILFGCK SR+PTDYLLSALLLI ILSSLRLLC+L+S F +RRR     N+ H DP
Sbjct: 1   MVCLGILFGCKRSRTPTDYLLSALLLIVILSSLRLLCYLVSRFLKRRR-----NNQHPDP 60

Query: 61  GLELQPQNNVAHLRQNLQPRPLPPNKLLNSSPADAPLPLSAF 103
             E+QPQ +VAHL+   QP P+P NK+L  +PAD  LPL+AF
Sbjct: 61  TSEVQPQTDVAHLQ---QPTPMPDNKVL--TPADV-LPLAAF 91

[Close]

BLAST of MS009504.1 vs. NCBI nr
Match: KAG6575525.1 (Protein UXT-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 84.0 bits (206), Expect = 8.5e-13
Identity = 58/103 (56.31%), Postives = 66/103 (64.08%), Query Frame = 0


Query: 1   MVCLGILFGCKTSRSPTDYLLSALLLIAILSSLRLLCFLISHFRRRRRSRNDQNSDHYDP 60
           MVCLGILFGC +SRS TDYLLSALLLI ILSSLRLLC  ++ F +R R R    S   DP
Sbjct: 167 MVCLGILFGCNSSRSSTDYLLSALLLIPILSSLRLLCSFLTRFLKRYRQRRYDPSP--DP 226

Query: 61  GLELQPQNNVAHLRQNLQPRPLPPNKLLNSSP-ADAPLPLSAF 103
            ++LQPQ +           PLP NKLL S+  A A  PL AF
Sbjct: 227 AIQLQPQIST----------PLPDNKLLASAALAHALPPLPAF 257

[Close]

BLAST of MS009504.1 vs. NCBI nr
Match: GAV77565.1 (hypothetical protein CFOL_v3_21036 [Cephalotus follicularis])

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-06
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 1  MVCLGILFGCKTSRSPTDYLLSALLLIAILSSLRLLCFLISH-FRRRRRSRNDQNSDHYD 60
          MVCLG+ FGCK SRS  DY+LSAL++IAIL  LR++C+ IS   +  R S  D+N +   
Sbjct: 1  MVCLGLFFGCKHSRSAKDYVLSALVIIAILFGLRIICYAISRLLKNNRHSHGDRNLN--I 60

Query: 61 PGLELQPQNNVA--HLRQNLQPRPLPPNKLLN 90
           GLE+QP  + A  +  +    R LP +K L+
Sbjct: 61 TGLEMQPAASPATGYAHRICLRRALPESKFLS 90

[Close]

BLAST of MS009504.1 vs. NCBI nr
Match: PNT55323.1 (hypothetical protein POPTR_001G186400 [Populus trichocarpa])

HSP 1 Score: 58.5 bits (140), Expect = 3.8e-05
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1  MVCLGILFGCKTSRSPTDYLLSALLLIAILSSLRLLCFLISHFRRRRRSRNDQNSDHYDP 60
          MVC+GI+FGCK SRS  DY+LSAL+++ IL  LR+ C+ I    ++ + R+ ++      
Sbjct: 1  MVCIGIIFGCKHSRSIKDYVLSALVIVTILICLRIFCYAIYRLLKKEQPRHGEDR---RG 60

Query: 61 GLELQPQNNVAHLRQNLQPRPLPPNKLLNSS 92
          GLE+QP+ N +H  +    R L  +  ++S+
Sbjct: 61 GLEMQPE-NASHAHRICTCRALLESNFVSSA 87

[Close]

BLAST of MS009504.1 vs. ExPASy TrEMBL
Match: A0A5D3BWC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002090 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 7.5e-23
Identity = 70/102 (68.63%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MVCLGILFGCKTSRSPTDYLLSALLLIAILSSLRLLCFLISHFRRRRRSRNDQNSDHYDP 60
           MVCLGILFGCK SRSPTDYLLSALLLIAILSSLRLLC+L+S F +RRR     N+ H DP
Sbjct: 61  MVCLGILFGCKRSRSPTDYLLSALLLIAILSSLRLLCYLVSRFLKRRR-----NNQHPDP 120

Query: 61  GLELQPQNNVAHLRQNLQPRPLPPNKLLNSSPADAPLPLSAF 103
             E+QPQ +VAHL    QP P+P NK L  +PADA LPL+AF
Sbjct: 121 TSEVQPQTDVAHLH---QPTPMPDNKFL--TPADA-LPLAAF 151

[Close]

BLAST of MS009504.1 vs. ExPASy TrEMBL
Match: A0A0A0KAI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447070 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 8.3e-22
Identity = 67/102 (65.69%), Postives = 79/102 (77.45%), Query Frame = 0


Query: 1   MVCLGILFGCKTSRSPTDYLLSALLLIAILSSLRLLCFLISHFRRRRRSRNDQNSDHYDP 60
           MVCLGILFGCK SR+PTDYLLSALLLI ILSSLRLLC+L+S F +RRR     N+ H DP
Sbjct: 1   MVCLGILFGCKRSRTPTDYLLSALLLIVILSSLRLLCYLVSRFLKRRR-----NNQHPDP 60

Query: 61  GLELQPQNNVAHLRQNLQPRPLPPNKLLNSSPADAPLPLSAF 103
             E+QPQ +VAHL+   QP P+P NK+L  +PAD  LPL+AF
Sbjct: 61  TSEVQPQTDVAHLQ---QPTPMPDNKVL--TPADV-LPLAAF 91

[Close]

BLAST of MS009504.1 vs. ExPASy TrEMBL
Match: A0A1Q3CBF1 (Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21036 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.8e-07
Identity = 42/92 (45.65%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 1  MVCLGILFGCKTSRSPTDYLLSALLLIAILSSLRLLCFLISH-FRRRRRSRNDQNSDHYD 60
          MVCLG+ FGCK SRS  DY+LSAL++IAIL  LR++C+ IS   +  R S  D+N +   
Sbjct: 1  MVCLGLFFGCKHSRSAKDYVLSALVIIAILFGLRIICYAISRLLKNNRHSHGDRNLN--I 60

Query: 61 PGLELQPQNNVA--HLRQNLQPRPLPPNKLLN 90
           GLE+QP  + A  +  +    R LP +K L+
Sbjct: 61 TGLEMQPAASPATGYAHRICLRRALPESKFLS 90

[Close]

BLAST of MS009504.1 vs. ExPASy TrEMBL
Match: A0A2C9W267 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G131600 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.4e-05
Identity = 35/67 (52.24%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 1  MVCLGILFGCKTSRSPTDYLLSALLLIAILSSLRLLCFLISHFRRRRRSRNDQNSDHYDP 60
          MVCLG+LFGCK SRS TDY+LSAL++IAIL  LR+ C+ I      R  + D   DH   
Sbjct: 1  MVCLGVLFGCKHSRSITDYVLSALVIIAILFCLRIFCYTI-----YRLLKKDDLQDH--- 59

Query: 61 GLELQPQ 68
          G+E+Q +
Sbjct: 61 GMEMQQE 59

[Close]

BLAST of MS009504.1 vs. ExPASy TrEMBL
Match: A0A2K2BZW9 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G186400 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-05
Identity = 35/91 (38.46%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 1  MVCLGILFGCKTSRSPTDYLLSALLLIAILSSLRLLCFLISHFRRRRRSRNDQNSDHYDP 60
          MVC+GI+FGCK SRS  DY+LSAL+++ IL  LR+ C+ I    ++ + R+ ++      
Sbjct: 1  MVCIGIIFGCKHSRSIKDYVLSALVIVTILICLRIFCYAIYRLLKKEQPRHGEDR---RG 60

Query: 61 GLELQPQNNVAHLRQNLQPRPLPPNKLLNSS 92
          GLE+QP+ N +H  +    R L  +  ++S+
Sbjct: 61 GLEMQPE-NASHAHRICTCRALLESNFVSSA 87

The following BLAST results are available for this feature:

BLAST of MS009504.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04011.1	1.5e-22	68.63	hypothetical protein E5676_scaffold347G002090 [Cucumis melo var. makuwa]	[more]
KGN45392.1	1.7e-21	65.69	hypothetical protein Csa_016516 [Cucumis sativus]	[more]
KAG6575525.1	8.5e-13	56.31	Protein UXT-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
GAV77565.1	1.2e-06	45.65	hypothetical protein CFOL_v3_21036 [Cephalotus follicularis]	[more]
PNT55323.1	3.8e-05	38.46	hypothetical protein POPTR_001G186400 [Populus trichocarpa]	[more]

BLAST of MS009504.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS009504.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BWC6	7.5e-23	68.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KAI0	8.3e-22	65.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447070 PE=4 SV=1	[more]
A0A1Q3CBF1	5.8e-07	45.65	Uncharacterized protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_21036 PE=4...	[more]
A0A2C9W267	1.4e-05	52.24	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_04G131600 PE=4 SV=...	[more]
A0A2K2BZW9	1.9e-05	38.46	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G186400 PE=4 ...	[more]

BLAST of MS009504.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..103

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS009504	MS009504	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS009504.1-cds	MS009504.1-cds-scaffold813:1786052..1786360	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS009504.1	MS009504.1-protein	polypeptide