MS009468.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS009468.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein SYS1 homolog
Location	scaffold813: 1546317 .. 1547849 (-)
Sequence length	456
RNA-Seq Expression	MS009468.1
Synteny	MS009468.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTATGGTACAGTGGTATGGGACCCTTGGCTCATTGTTGCCCAAATTGTTTGCATTCAATGCTTGTACTACATTACTCTTGGCATATTGCTGGCGACTCTAGTTGGGACTCGCGTTTCTCGGATCAGCCTTGTCTACTTCTTTGATTATGCTACAATAACCGTTTCTACAGCCACTGGTTGGTGTGTTATTGCTTCATTCCTGCTAAGTGCGCTTGCTGGGTAAGAATTATGTTATGGATTTTCTCCCCGCCATATCTGGTATTATGTATATTTGCAATGCATGGTTTGAAATAATTGACAAATCTCAAGCAAAGTTGGTTGTCTTCCCTGTTTCTATATATCAAAACTACTTTGGAGTTTGGACGCATATTAATACTGCATTACACTTGATTTATAGAAGTTGCAGTTTATTAGATTATTTGGAATTTAATAGATAAACCCTTCTTGCTGATATTGTTATGATTGTTAACCATAACAATATTAATGTTATTGTTTAACGAGGCTATTTTTTTTGTTGTAATCTATAATGCACTTGACTGGTTGATGCCCGAAATTATTTTCTTCAATGGTTTGCAGTATGCTAGTATCATATTTGTTGTTCCTTCAGTAATTGATTTGAGAATTTCAATTAAGGTCCATATGTACTAGTTGGCTACTTGTTTTGAGAACTCACCTTTTTAATTTCCCATCATCCTAAATCCATTTTGGCCTGTTTGCAGAAATATGTGGATGTTGTTGCCCTTTTAAGTGTTCTCTGTTACTATTCACAGATATTAACTTGGTATATTTTCGGGTTACTGGGTCTGCTTGTCATAAATTCTATTTCAAATTGCGTATGAAATAACTTAAATTTGGAAACCCTATGGAATGGAAAAGTGAGTTGGTTAGAATGTGTGGGTGATGTATGATTGTTCATGCTTTTTATGTCAGAGAAGATGGCGCAGCCATTTTGCTCCCTTGAACTTTTTCCTAAATGGTGTTTTCAGCTGGGTTGGGGATCAGGGCGGTTGGAGAACAGCAACATCGTTTTGGAACAATACCCAATAATAGATGTTGATTATGTTGAATGTTGCCCTGAACAGAACCGTAGAATATTGTTTCTTTTTCCATATGTTTGATACAATTGATAGTGTTAGGTTTCAAAGCAACCAGTTCGATCCCTCATCCTCACATGTTGTACTAAAAAATGCAACCAGTTTGAATCTTAAACTTTGTTTCTTTGATCATATTCTTTACTTCATCCACAACTTATATCAGCTTCTCTCACCATTACATTTTTTTGTTTTGTTCATGCAGAGCAGGATATTTGGTTTACTTGATCGAAAGGGCAAAGAAGTGTTTAGATTTTTCAGCCACACTCTATATAATCCACCTTTTCATCTGTATCATATATGGAGGGTGGCCTTCCTCAATGACGTGGTGGGTTGTGAATGGTACTGGGCTTGTAGTGATGTCTTTGCTGGGTGAATATCTATGTATCAAACGGGAACTGCGAGAAATTCCCATAACACGATTGCGTTCAAGTAAG

mRNA sequence

ATGTTCTATGGTACAGTGGTATGGGACCCTTGGCTCATTGTTGCCCAAATTGTTTGCATTCAATGCTTGTACTACATTACTCTTGGCATATTGCTGGCGACTCTAGTTGGGACTCGCGTTTCTCGGATCAGCCTTGTCTACTTCTTTGATTATGCTACAATAACCGTTTCTACAGCCACTGGTTGGTGTGTTATTGCTTCATTCCTGCTAAGTGCGCTTGCTGGAGCAGGATATTTGGTTTACTTGATCGAAAGGGCAAAGAAGTGTTTAGATTTTTCAGCCACACTCTATATAATCCACCTTTTCATCTGTATCATATATGGAGGGTGGCCTTCCTCAATGACGTGGTGGGTTGTGAATGGTACTGGGCTTGTAGTGATGTCTTTGCTGGGTGAATATCTATGTATCAAACGGGAACTGCGAGAAATTCCCATAACACGATTGCGTTCAAGTAAG

Coding sequence (CDS)

ATGTTCTATGGTACAGTGGTATGGGACCCTTGGCTCATTGTTGCCCAAATTGTTTGCATTCAATGCTTGTACTACATTACTCTTGGCATATTGCTGGCGACTCTAGTTGGGACTCGCGTTTCTCGGATCAGCCTTGTCTACTTCTTTGATTATGCTACAATAACCGTTTCTACAGCCACTGGTTGGTGTGTTATTGCTTCATTCCTGCTAAGTGCGCTTGCTGGAGCAGGATATTTGGTTTACTTGATCGAAAGGGCAAAGAAGTGTTTAGATTTTTCAGCCACACTCTATATAATCCACCTTTTCATCTGTATCATATATGGAGGGTGGCCTTCCTCAATGACGTGGTGGGTTGTGAATGGTACTGGGCTTGTAGTGATGTCTTTGCTGGGTGAATATCTATGTATCAAACGGGAACTGCGAGAAATTCCCATAACACGATTGCGTTCAAGTAAG

Protein sequence

MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTATGWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVNGTGLVVMSLLGEYLCIKRELREIPITRLRSSK

Homology

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BLAST of MS009468.1 vs. NCBI nr
Match: XP_022143685.1 (protein SYS1 homolog [Momordica charantia])

HSP 1 Score: 296.6 bits (758), Expect = 1.2e-76
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTAT 60
           MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTAT
Sbjct: 1   MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTAT 60

Query: 61  GWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVN 120
           GWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVN
Sbjct: 61  GWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSS 152
           GTGLVVMSLLGEYLCIKRELREIPITRLRS+
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSN 151

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BLAST of MS009468.1 vs. NCBI nr
Match: XP_038898906.1 (protein SYS1 homolog [Benincasa hispida])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 144/151 (95.36%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTAT 60
           MFYG VVWDPWLIVAQIVC+QCLYY+TLGILLATLVGTRVSRISLVYFFDYATITVSTAT
Sbjct: 1   MFYGAVVWDPWLIVAQIVCLQCLYYLTLGILLATLVGTRVSRISLVYFFDYATITVSTAT 60

Query: 61  GWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVN 120
           GWCVIASFLLSA+AGAGYLVYLIERAKKCLDF+ATLYI HLFICIIYGGWPSSMTWWVVN
Sbjct: 61  GWCVIASFLLSAIAGAGYLVYLIERAKKCLDFAATLYIFHLFICIIYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSS 152
           GTGLVVMSLLGEYLCIKRELREIPITRLRS+
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSN 151

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BLAST of MS009468.1 vs. NCBI nr
Match: XP_022953394.1 (protein SYS1 homolog [Cucurbita moschata] >KAG7014094.1 Protein SYS1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 286.6 bits (732), Expect = 1.3e-73
Identity = 142/151 (94.04%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTAT 60
           MFYG VVWDPWLIVAQIVC+QCLYY+TLGIL+ATLVGTRVSRISLVYFFDYATITVSTAT
Sbjct: 1   MFYGAVVWDPWLIVAQIVCLQCLYYLTLGILIATLVGTRVSRISLVYFFDYATITVSTAT 60

Query: 61  GWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVN 120
           GWCVIASFLLSALAGA YLVYLIERAKKCLDF+ATLYI+HLFICI+YGGWPSSMTWWVVN
Sbjct: 61  GWCVIASFLLSALAGAVYLVYLIERAKKCLDFAATLYILHLFICIVYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSS 152
           GTGLVVMSLLGEYLCIKRELREIPITRLRS+
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSN 151

[Close]

BLAST of MS009468.1 vs. NCBI nr
Match: XP_011659561.1 (protein SYS1 homolog [Cucumis sativus] >KGN45351.1 hypothetical protein Csa_016132 [Cucumis sativus])

HSP 1 Score: 286.6 bits (732), Expect = 1.3e-73
Identity = 142/151 (94.04%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTAT 60
           MFYG VVWDPWLIVAQIVC+QC YY+TLGILLATLVGTRVSRISLVYFFDYATI+VSTAT
Sbjct: 1   MFYGAVVWDPWLIVAQIVCLQCFYYLTLGILLATLVGTRVSRISLVYFFDYATISVSTAT 60

Query: 61  GWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVN 120
           GWCVIASFLLSA+AGAGYLVYLIERAKKCLDF+ATLYI HLFICIIYGGWPSSMTWWVVN
Sbjct: 61  GWCVIASFLLSAIAGAGYLVYLIERAKKCLDFAATLYIFHLFICIIYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSS 152
           GTGLVVMSLLGEYLCIKRELREIPITRLRS+
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSN 151

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BLAST of MS009468.1 vs. NCBI nr
Match: XP_023547444.1 (protein SYS1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 286.2 bits (731), Expect = 1.7e-73
Identity = 141/151 (93.38%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTAT 60
           MFYG VVWDPWLIVAQIVC+QCLYY+TLGIL+ATLVGTRVSRISLVYFFDYATITVSTAT
Sbjct: 1   MFYGAVVWDPWLIVAQIVCLQCLYYLTLGILIATLVGTRVSRISLVYFFDYATITVSTAT 60

Query: 61  GWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVN 120
           GWCVIASFLLSALAGA YL+YLIERAKKCLDF+ATLYI+HLFICI+YGGWPSSMTWWVVN
Sbjct: 61  GWCVIASFLLSALAGAVYLIYLIERAKKCLDFAATLYILHLFICIVYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSS 152
           GTGLVVMSLLGEYLCIKRELREIPITRLRS+
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSN 151

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BLAST of MS009468.1 vs. ExPASy Swiss-Prot
Match: Q55E69 (Protein SYS1 homolog OS=Dictyostelium discoideum OX=44689 GN=sys1 PE=3 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.2e-28
Identity = 65/147 (44.22%), Postives = 97/147 (65.99%), Query Frame = 0


Query: 1   MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTAT 60
           MFY    WDP LI+ QI+ IQCLYYI L  +L  L     S +SL   F+Y +I   + +
Sbjct: 1   MFYKYNAWDPKLIIGQILSIQCLYYILLAGILYLLDSMFSSSLSLEQMFEYQSINTHSQS 60

Query: 61  GWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVN 120
           G  V+ +FL+++L G+  L Y++ER+KKCLD SAT+  IH  I  I  G+P ++ WW + 
Sbjct: 61  GRVVMTAFLINSLFGSFCLKYIVERSKKCLDHSATVTFIHFIIVWIVSGFPKTVVWWAIQ 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITR 148
             G+V+M+++GEYLC+++EL +IP+ R
Sbjct: 121 LIGMVIMAMIGEYLCMRKELMDIPLQR 147

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BLAST of MS009468.1 vs. ExPASy Swiss-Prot
Match: A7S6Y0 (Protein SYS1 homolog OS=Nematostella vectensis OX=45351 GN=sys1 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.1e-26
Identity = 62/150 (41.33%), Postives = 100/150 (66.67%), Query Frame = 0


Query: 3   YGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTATGW 62
           + T VWDP LI++QI+ IQC +YI+LG+ +  +     S  SL  FF Y  + +S+  G 
Sbjct: 5   FRTNVWDPVLIISQIIAIQCTFYISLGVWVLIVDYWSGSIHSLDQFFAYKELDISSLKGK 64

Query: 63  CVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVNGT 122
            ++ +F L++L GA  L ++++RAK+CLDF+ T +I+HL  C IY G+P S TWW++N  
Sbjct: 65  LLMIAFCLNSLTGAMALWFIVKRAKQCLDFTTTAHIVHLVFCCIYAGFPFSWTWWLLNII 124

Query: 123 GLVVMSLLGEYLCIKRELREIPITRLRSSK 153
            L +M+++GE++C+K EL+ I ++   S K
Sbjct: 125 CLALMAVIGEFVCMKTELKAIKVSAGSSGK 154

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BLAST of MS009468.1 vs. ExPASy Swiss-Prot
Match: Q8N2H4 (Protein SYS1 homolog OS=Homo sapiens OX=9606 GN=SYS1 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-23
Identity = 62/144 (43.06%), Postives = 93/144 (64.58%), Query Frame = 0


Query: 3   YGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTATGW 62
           + + VWDP LI++QIV +Q +YY +LG+ LA + G   S  SL   FD   +  ST  G 
Sbjct: 5   FRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPGR 64

Query: 63  CVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGG-WPSSMTWWVVNG 122
             + SF+L+AL  A  L+Y I R K+CLDF+ T++  HL  C  Y   +PS++TWW+V  
Sbjct: 65  LSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQA 124

Query: 123 TGLVVMSLLGEYLCIKRELREIPI 146
             + +M+++GEYLC++ EL+EIP+
Sbjct: 125 VCIALMAVIGEYLCMRTELKEIPL 148

[Close]

BLAST of MS009468.1 vs. ExPASy Swiss-Prot
Match: A4K2N5 (Protein SYS1 homolog OS=Papio anubis OX=9555 GN=SYS1 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-23
Identity = 62/144 (43.06%), Postives = 93/144 (64.58%), Query Frame = 0


Query: 3   YGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTATGW 62
           + + VWDP LI++QIV +Q +YY +LG+ LA + G   S  SL   FD   +  ST  G 
Sbjct: 5   FRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPGR 64

Query: 63  CVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGG-WPSSMTWWVVNG 122
             + SF+L+AL  A  L+Y I R K+CLDF+ T++  HL  C  Y   +PS++TWW+V  
Sbjct: 65  LSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQA 124

Query: 123 TGLVVMSLLGEYLCIKRELREIPI 146
             + +M+++GEYLC++ EL+EIP+
Sbjct: 125 VCIALMAVIGEYLCMRTELKEIPL 148

[Close]

BLAST of MS009468.1 vs. ExPASy Swiss-Prot
Match: A4K2W1 (Protein SYS1 homolog OS=Pongo abelii OX=9601 GN=SYS1 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-23
Identity = 62/144 (43.06%), Postives = 93/144 (64.58%), Query Frame = 0


Query: 3   YGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTATGW 62
           + + VWDP LI++QIV +Q +YY +LG+ LA + G   S  SL   FD   +  ST  G 
Sbjct: 5   FRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDGLVRSSPSLDQMFDAEILGFSTPPGR 64

Query: 63  CVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGG-WPSSMTWWVVNG 122
             + SF+L+AL  A  L+Y I R K+CLDF+ T++  HL  C  Y   +PS++TWW+V  
Sbjct: 65  LSMMSFILNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWFYSSRFPSALTWWLVQA 124

Query: 123 TGLVVMSLLGEYLCIKRELREIPI 146
             + +M+++GEYLC++ EL+EIP+
Sbjct: 125 VCIALMAVIGEYLCMRTELKEIPL 148

[Close]

BLAST of MS009468.1 vs. ExPASy TrEMBL
Match: A0A6J1CPG7 (Protein SYS1 homolog OS=Momordica charantia OX=3673 GN=LOC111013526 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.0e-77
Identity = 150/151 (99.34%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTAT 60
           MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTAT
Sbjct: 1   MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTAT 60

Query: 61  GWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVN 120
           GWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVN
Sbjct: 61  GWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSS 152
           GTGLVVMSLLGEYLCIKRELREIPITRLRS+
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSN 151

[Close]

BLAST of MS009468.1 vs. ExPASy TrEMBL
Match: A0A0A0KC23 (Protein SYS1 homolog OS=Cucumis sativus OX=3659 GN=Csa_7G446680 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.2e-74
Identity = 142/151 (94.04%), Postives = 148/151 (98.01%), Query Frame = 0


Query: 1   MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTAT 60
           MFYG VVWDPWLIVAQIVC+QC YY+TLGILLATLVGTRVSRISLVYFFDYATI+VSTAT
Sbjct: 1   MFYGAVVWDPWLIVAQIVCLQCFYYLTLGILLATLVGTRVSRISLVYFFDYATISVSTAT 60

Query: 61  GWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVN 120
           GWCVIASFLLSA+AGAGYLVYLIERAKKCLDF+ATLYI HLFICIIYGGWPSSMTWWVVN
Sbjct: 61  GWCVIASFLLSAIAGAGYLVYLIERAKKCLDFAATLYIFHLFICIIYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSS 152
           GTGLVVMSLLGEYLCIKRELREIPITRLRS+
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSN 151

[Close]

BLAST of MS009468.1 vs. ExPASy TrEMBL
Match: A0A6J1GPI7 (Protein SYS1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111455962 PE=3 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 6.2e-74
Identity = 142/151 (94.04%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTAT 60
           MFYG VVWDPWLIVAQIVC+QCLYY+TLGIL+ATLVGTRVSRISLVYFFDYATITVSTAT
Sbjct: 1   MFYGAVVWDPWLIVAQIVCLQCLYYLTLGILIATLVGTRVSRISLVYFFDYATITVSTAT 60

Query: 61  GWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVN 120
           GWCVIASFLLSALAGA YLVYLIERAKKCLDF+ATLYI+HLFICI+YGGWPSSMTWWVVN
Sbjct: 61  GWCVIASFLLSALAGAVYLVYLIERAKKCLDFAATLYILHLFICIVYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSS 152
           GTGLVVMSLLGEYLCIKRELREIPITRLRS+
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSN 151

[Close]

BLAST of MS009468.1 vs. ExPASy TrEMBL
Match: A0A6J1JZ66 (Protein SYS1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111488736 PE=3 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.1e-73
Identity = 141/151 (93.38%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTAT 60
           MFYG VVWDPWLIVAQIVC+QCLYY+TLGIL+ATLVGTRVSRISLVYFFDYATITVSTAT
Sbjct: 1   MFYGAVVWDPWLIVAQIVCLQCLYYLTLGILIATLVGTRVSRISLVYFFDYATITVSTAT 60

Query: 61  GWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVN 120
           GWCVIASFL+SALAGA YLVYLIERAKKCLDF+ATLYI+HLFICI+YGGWPSSMTWWVVN
Sbjct: 61  GWCVIASFLISALAGAVYLVYLIERAKKCLDFAATLYILHLFICIVYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSS 152
           GTGLVVMSLLGEYLCIKRELREIPITRLRS+
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSN 151

[Close]

BLAST of MS009468.1 vs. ExPASy TrEMBL
Match: A0A1S3CGS5 (Protein SYS1 homolog OS=Cucumis melo OX=3656 GN=LOC103500569 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 5.2e-73
Identity = 140/151 (92.72%), Postives = 146/151 (96.69%), Query Frame = 0


Query: 1   MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTAT 60
           MFYG  VWDPWLIVAQIVC+QC YY+TLGI LATLVGTRVSRISLVYFFDYATITVSTAT
Sbjct: 1   MFYGAGVWDPWLIVAQIVCLQCFYYLTLGIFLATLVGTRVSRISLVYFFDYATITVSTAT 60

Query: 61  GWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVN 120
           GWCVIASFLLSA+AGAGYLVYLIERAKKCLDF+ATLYI HLFICI+YGGWPSSMTWWVVN
Sbjct: 61  GWCVIASFLLSAIAGAGYLVYLIERAKKCLDFAATLYIFHLFICIVYGGWPSSMTWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSS 152
           GTGLVVMSLLGEYLCIKRELREIPITRLRS+
Sbjct: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSN 151

[Close]

BLAST of MS009468.1 vs. TAIR 10
Match: AT1G79990.1 (structural molecules )

HSP 1 Score: 235.7 bits (600), Expect = 2.4e-62
Identity = 111/151 (73.51%), Postives = 128/151 (84.77%), Query Frame = 0


Query: 1   MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTAT 60
           MFYGT VWDPWLIV QI+C+QC YY+TLG+     +G RV R+SLVYFFDYAT+T ST T
Sbjct: 1   MFYGTAVWDPWLIVGQIICLQCSYYLTLGLFTMVFLGLRVPRLSLVYFFDYATLTTSTFT 60

Query: 61  GWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVN 120
           GW VIASFL S+LAGA Y+++L+ERA+KCLDFSATLYIIHLF CI+YGGWPSSM WWVVN
Sbjct: 61  GWSVIASFLFSSLAGAVYMIFLVERARKCLDFSATLYIIHLFFCIMYGGWPSSMAWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRSS 152
           GTGL VM+LL EYLCIKRE REIP+ R  S+
Sbjct: 121 GTGLAVMALLAEYLCIKREQREIPMDRFHSN 151

[Close]

BLAST of MS009468.1 vs. TAIR 10
Match: AT1G79990.2 (structural molecules )

HSP 1 Score: 235.3 bits (599), Expect = 3.1e-62
Identity = 111/150 (74.00%), Postives = 127/150 (84.67%), Query Frame = 0


Query: 1   MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTAT 60
           MFYGT VWDPWLIV QI+C+QC YY+TLG+     +G RV R+SLVYFFDYAT+T ST T
Sbjct: 1   MFYGTAVWDPWLIVGQIICLQCSYYLTLGLFTMVFLGLRVPRLSLVYFFDYATLTTSTFT 60

Query: 61  GWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVN 120
           GW VIASFL S+LAGA Y+++L+ERA+KCLDFSATLYIIHLF CI+YGGWPSSM WWVVN
Sbjct: 61  GWSVIASFLFSSLAGAVYMIFLVERARKCLDFSATLYIIHLFFCIMYGGWPSSMAWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRS 151
           GTGL VM+LL EYLCIKRE REIP+ R  S
Sbjct: 121 GTGLAVMALLAEYLCIKREQREIPMDRFHS 150

[Close]

BLAST of MS009468.1 vs. TAIR 10
Match: AT1G79990.4 (structural molecules )

HSP 1 Score: 235.3 bits (599), Expect = 3.1e-62
Identity = 111/150 (74.00%), Postives = 127/150 (84.67%), Query Frame = 0


Query: 1   MFYGTVVWDPWLIVAQIVCIQCLYYITLGILLATLVGTRVSRISLVYFFDYATITVSTAT 60
           MFYGT VWDPWLIV QI+C+QC YY+TLG+     +G RV R+SLVYFFDYAT+T ST T
Sbjct: 1   MFYGTAVWDPWLIVGQIICLQCSYYLTLGLFTMVFLGLRVPRLSLVYFFDYATLTTSTFT 60

Query: 61  GWCVIASFLLSALAGAGYLVYLIERAKKCLDFSATLYIIHLFICIIYGGWPSSMTWWVVN 120
           GW VIASFL S+LAGA Y+++L+ERA+KCLDFSATLYIIHLF CI+YGGWPSSM WWVVN
Sbjct: 61  GWSVIASFLFSSLAGAVYMIFLVERARKCLDFSATLYIIHLFFCIMYGGWPSSMAWWVVN 120

Query: 121 GTGLVVMSLLGEYLCIKRELREIPITRLRS 151
           GTGL VM+LL EYLCIKRE REIP+ R  S
Sbjct: 121 GTGLAVMALLAEYLCIKREQREIPMDRFHS 150

The following BLAST results are available for this feature:

BLAST of MS009468.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143685.1	1.2e-76	99.34	protein SYS1 homolog [Momordica charantia]	[more]
XP_038898906.1	1.5e-74	95.36	protein SYS1 homolog [Benincasa hispida]	[more]
XP_022953394.1	1.3e-73	94.04	protein SYS1 homolog [Cucurbita moschata] >KAG7014094.1 Protein SYS1-like protei...	[more]
XP_011659561.1	1.3e-73	94.04	protein SYS1 homolog [Cucumis sativus] >KGN45351.1 hypothetical protein Csa_0161...	[more]
XP_023547444.1	1.7e-73	93.38	protein SYS1 homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS009468.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q55E69	2.2e-28	44.22	Protein SYS1 homolog OS=Dictyostelium discoideum OX=44689 GN=sys1 PE=3 SV=1	[more]
A7S6Y0	2.1e-26	41.33	Protein SYS1 homolog OS=Nematostella vectensis OX=45351 GN=sys1 PE=3 SV=1	[more]
Q8N2H4	1.6e-23	43.06	Protein SYS1 homolog OS=Homo sapiens OX=9606 GN=SYS1 PE=1 SV=1	[more]
A4K2N5	1.6e-23	43.06	Protein SYS1 homolog OS=Papio anubis OX=9555 GN=SYS1 PE=3 SV=1	[more]
A4K2W1	1.6e-23	43.06	Protein SYS1 homolog OS=Pongo abelii OX=9601 GN=SYS1 PE=3 SV=1	[more]

BLAST of MS009468.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CPG7	6.0e-77	99.34	Protein SYS1 homolog OS=Momordica charantia OX=3673 GN=LOC111013526 PE=3 SV=1	[more]
A0A0A0KC23	6.2e-74	94.04	Protein SYS1 homolog OS=Cucumis sativus OX=3659 GN=Csa_7G446680 PE=3 SV=1	[more]
A0A6J1GPI7	6.2e-74	94.04	Protein SYS1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111455962 PE=3 SV=1	[more]
A0A6J1JZ66	1.1e-73	93.38	Protein SYS1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111488736 PE=3 SV=1	[more]
A0A1S3CGS5	5.2e-73	92.72	Protein SYS1 homolog OS=Cucumis melo OX=3656 GN=LOC103500569 PE=3 SV=1	[more]

BLAST of MS009468.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79990.1	2.4e-62	73.51	structural molecules	[more]
AT1G79990.2	3.1e-62	74.00	structural molecules	[more]
AT1G79990.4	3.1e-62	74.00	structural molecules	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016973	Integral membrane protein SYS1	PIRSF	PIRSF031402	SYS1_homolog	coord: 1..152 e-value: 6.2E-58 score: 193.2
IPR019185	Integral membrane protein SYS1-related	PFAM	PF09801	SYS1	coord: 5..144 e-value: 3.5E-45 score: 153.7
IPR019185	Integral membrane protein SYS1-related	PANTHER	PTHR12952	SYS1	coord: 1..152
None	No IPR available	PANTHER	PTHR12952:SF3	PROTEIN SYS1 HOMOLOG	coord: 1..152

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS009468	MS009468	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS009468.1-cds	MS009468.1-cds-scaffold813:1546317..1546548	CDS
MS009468.1-cds	MS009468.1-cds-scaffold813:1547626..1547849	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS009468.1	MS009468.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000139	Golgi membrane