MS008531.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS008531.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein TPR1-like isoform X1
Location	scaffold4: 2009809 .. 2011340 (+)
Sequence length	558
RNA-Seq Expression	MS008531.1
Synteny	MS008531.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACGGATCCCGACCGCGGCATTCTCTTCCTCATCCTCCACTACCTCGACCAGCAGAATCTCTCCGAAACCGCTCGCTCGTAAGATCTGAACCCAAATTAATTAATCATCATTAATCTTAATTTTAGAAAATATTATTTGATTTGATTTTTTTTTAAAATTGAATTTTGAGGCTGGAATGCGAAACTGGATTGTATTTCAACATGAGTTACTTCGAAGAAATGTTGAATTGCTGTGCTTATAATGAAGCCGAGAGTTATCTCTGCGGATTCACCGATATTCACGACAATCTCTACTCCACCAAGATTTACTTCGGGATTAGGAAGCTCAAGTTCCTCGAAGCACTGGCCGAGTACGCATATATATATATATATATATATTATTCTACTTCTTTATTTATTTTTTAAAATTTTATTCTACTTCCACCAAGAAAACGTGATTATAAGACGCGATTTTGCATGCAGTGGAGAGCGGGAGATTGCTCGGGAGGTGGTCGAAAACGACATCGAAATTTTCAGCGAATACAACCCAGGGTTGGTCCAGCAAGCTTTTGAGCTCGTGCAAATGGAGGATTTTATGCAAGTTTTCAATTTCCGTACAGCTTTTTCCTTTTTCTTTTCTTTTTGCTGGTTAAATTGCATCGATTATGCCTCGTGAATCTTTTCTAGCTTAAACTACAAGTTTGGGCTATGAAAATTGAAATTTCACTAAATTAATTTGAAAGAAATAGGTTGTAGAATTAATCGTTGTTGATGAACTTGCTAAACACTTCTCAAAGTTGATCTACTAGACAAACATTTAAAATTTAGGAGTCTGTTAGATGTTTATTAAAGTTTAGAAGCCTAATATTATACATAATTTTTAAAATTTAGATACAAAATTTGTAATAAGCCCTTAAAACTGGAGTTGTGTCTACTTAATCTTTTTACTTTTAAAAAAATCTACTTTGTGTTTAATAAATCACTCACATTAATTCATTTAACATGATGGCCATCTAGCAAGTTCATTTGAGACATAATTCTTAAATAATATGTCACAACCGCCTTACACTAACAAAATTAGTAATGGAGACTTATTTCTTATTATATATAAAATAAAAAATTTAGTCACTTGTTACAATTTTTTCTAAACCGCAGAGGCTATTTAGTGGGGACCTAATTTGAACTTTTTAAAGTAATGTAATTAAATAAACCACTAAATTCATGAACCAAACTTATAATTTAATGGTTTTTACTTTTTATTATTTTTTATGATTTTACAGACGAGGATGTCTGATGATCATATCGTCATCATAAACAAACAGGTCTCACAGGTTGCTGTCGAGCTACAAAAATTTGAAGGAAGCAAGAAAAGTTGTAATGGCAAATATCAAGAGATGCATCAATGCGAATCCGCTTTTCGAAGGGAAGCTCACTCTCCCACCGCTTCCAACAACGTTGCAGAGGCTCTACACGGAGGCGATGGCCGGCCGTGGTTTCTTCAATGGTCGTGAAGTACCACCGGCCACTTGTCGGAGAGAGTCGAACGAT

mRNA sequence

ATGGCGACGGATCCCGACCGCGGCATTCTCTTCCTCATCCTCCACTACCTCGACCAGCAGAATCTCTCCGAAACCGCTCGCTCGCTGGAATGCGAAACTGGATTGTATTTCAACATGAGTTACTTCGAAGAAATGTTGAATTGCTGTGCTTATAATGAAGCCGAGAGTTATCTCTGCGGATTCACCGATATTCACGACAATCTCTACTCCACCAAGATTTACTTCGGGATTAGGAAGCTCAAGTTCCTCGAAGCACTGGCCGATGGAGAGCGGGAGATTGCTCGGGAGGTGGTCGAAAACGACATCGAAATTTTCAGCGAATACAACCCAGGGTCTCACAGGTTGCTGTCGAGCTACAAAAATTTGAAGGAAGCAAGAAAAGTTGTAATGGCAAATATCAAGAGATGCATCAATGCGAATCCGCTTTTCGAAGGGAAGCTCACTCTCCCACCGCTTCCAACAACGTTGCAGAGGCTCTACACGGAGGCGATGGCCGGCCGTGGTTTCTTCAATGGTCGTGAAGTACCACCGGCCACTTGTCGGAGAGAGTCGAACGAT

Coding sequence (CDS)

ATGGCGACGGATCCCGACCGCGGCATTCTCTTCCTCATCCTCCACTACCTCGACCAGCAGAATCTCTCCGAAACCGCTCGCTCGCTGGAATGCGAAACTGGATTGTATTTCAACATGAGTTACTTCGAAGAAATGTTGAATTGCTGTGCTTATAATGAAGCCGAGAGTTATCTCTGCGGATTCACCGATATTCACGACAATCTCTACTCCACCAAGATTTACTTCGGGATTAGGAAGCTCAAGTTCCTCGAAGCACTGGCCGATGGAGAGCGGGAGATTGCTCGGGAGGTGGTCGAAAACGACATCGAAATTTTCAGCGAATACAACCCAGGGTCTCACAGGTTGCTGTCGAGCTACAAAAATTTGAAGGAAGCAAGAAAAGTTGTAATGGCAAATATCAAGAGATGCATCAATGCGAATCCGCTTTTCGAAGGGAAGCTCACTCTCCCACCGCTTCCAACAACGTTGCAGAGGCTCTACACGGAGGCGATGGCCGGCCGTGGTTTCTTCAATGGTCGTGAAGTACCACCGGCCACTTGTCGGAGAGAGTCGAACGAT

Protein sequence

MATDPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCGFTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPGSHRLLSSYKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMAGRGFFNGREVPPATCRRESND

Homology

[Close]

BLAST of MS008531.1 vs. NCBI nr
Match: XP_022139726.1 (protein TPR1-like isoform X2 [Momordica charantia])

HSP 1 Score: 385.2 bits (988), Expect = 3.2e-103
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MATDPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCG 60
           MATDPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCG
Sbjct: 1   MATDPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCG 60

Query: 61  FTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPGSHRLLSSYK 120
           FTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPGSHRLLSSYK
Sbjct: 61  FTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPGSHRLLSSYK 120

Query: 121 NLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMAGRGFFNGREVPPATC 180
           NLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMAGRGFFNGREVPPATC
Sbjct: 121 NLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMAGRGFFNGREVPPATC 180

Query: 181 RRESND 187
           RRESND
Sbjct: 181 RRESND 186

[Close]

BLAST of MS008531.1 vs. NCBI nr
Match: XP_022139717.1 (protein TPR1-like isoform X1 [Momordica charantia])

HSP 1 Score: 375.2 bits (962), Expect = 3.3e-100
Identity = 186/201 (92.54%), Postives = 186/201 (92.54%), Query Frame = 0


Query: 1   MATDPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCG 60
           MATDPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCG
Sbjct: 1   MATDPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCG 60

Query: 61  FTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPG--------- 120
           FTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPG         
Sbjct: 61  FTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPGLVQQAFELV 120

Query: 121 ------SHRLLSSYKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMA 180
                 SHRLLSSYKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMA
Sbjct: 121 QMEDFMSHRLLSSYKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMA 180

Query: 181 GRGFFNGREVPPATCRRESND 187
           GRGFFNGREVPPATCRRESND
Sbjct: 181 GRGFFNGREVPPATCRRESND 201

[Close]

BLAST of MS008531.1 vs. NCBI nr
Match: XP_008452906.1 (PREDICTED: protein TPR1-like isoform X2 [Cucumis melo] >ADN34126.1 hypothetical protein [Cucumis melo subsp. melo] >TYK19976.1 protein TPR1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 302.0 bits (772), Expect = 3.6e-78
Identity = 148/188 (78.72%), Postives = 161/188 (85.64%), Query Frame = 0


Query: 1   MAT--DPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYL 60
           MAT  DPDR +LFLIL +LD QNLSETARSLECETGL+FNM+YFEE+LNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPGSHRLLSS 120
           CGFTDIHDN+YSTKIYFGIRKLKFLEALADGERE+AREVVE DIEIF +YNPGSH LLSS
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALADGEREVAREVVEKDIEIFDQYNPGSHILLSS 120

Query: 121 YKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMAGRGFFNGREVPPA 180
           YKN+KEARKVVM NIK+CI ANPL +GKL+ PPL TTLQ  Y EAMA RG        PA
Sbjct: 121 YKNMKEARKVVMENIKKCIEANPLLQGKLSFPPLSTTLQAFYMEAMASRG------RAPA 180

Query: 181 TCRRESND 187
           TCRR+  D
Sbjct: 181 TCRRDFKD 182

[Close]

BLAST of MS008531.1 vs. NCBI nr
Match: XP_038896847.1 (protein TPR1-like [Benincasa hispida])

HSP 1 Score: 294.7 bits (753), Expect = 5.7e-76
Identity = 140/183 (76.50%), Postives = 161/183 (87.98%), Query Frame = 0


Query: 4   DPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCGFTD 63
           DPDR +LFLIL +LD QNLSETARSLECETGL+FNM+YFEEMLNCCAY+EAE+YLCGFTD
Sbjct: 6   DPDRALLFLILQFLDHQNLSETARSLECETGLFFNMNYFEEMLNCCAYDEAENYLCGFTD 65

Query: 64  IHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPGSHRLLSSYKNLK 123
           IHDN+YS KIYF IRKLKFLEALADGEREIAR+VVEND+EIF++YNPGSH LLSSYKN+K
Sbjct: 66  IHDNIYSNKIYFEIRKLKFLEALADGEREIARKVVENDLEIFNQYNPGSHMLLSSYKNIK 125

Query: 124 EARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMAGRGFFNGREVPPATCRRE 183
           EARKVV+ NIK+CI ANPL +GKL+ PPLPTTLQ +YT+AMA R        P A CRR+
Sbjct: 126 EARKVVLENIKKCIQANPLLQGKLSFPPLPTTLQAVYTKAMASRA-----GGPAAACRRD 183

Query: 184 SND 187
           S++
Sbjct: 186 SDN 183

[Close]

BLAST of MS008531.1 vs. NCBI nr
Match: KAE8649955.1 (hypothetical protein Csa_012980 [Cucumis sativus])

HSP 1 Score: 293.9 bits (751), Expect = 9.8e-76
Identity = 148/203 (72.91%), Postives = 161/203 (79.31%), Query Frame = 0


Query: 1   MAT--DPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYL 60
           MAT  DPDR +LFLIL +LD QNLSETARSLECETGL+FNM+YFEE+LNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPG------- 120
           CGFTDIHDN+YSTKIYFGIRKLKFLEAL DGERE+AREVVE DIEIF +YNPG       
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGLVQQAFE 120

Query: 121 --------SHRLLSSYKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEA 180
                   SH LLSSY+N+KEARKVVM NIK+CI ANPL EGKL+ PPL TTLQ  YTEA
Sbjct: 121 LLQMDNFMSHMLLSSYRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEA 180

Query: 181 MAGRGFFNGREVPPATCRRESND 187
           MA       R  PPATCRR+  D
Sbjct: 181 MA------SRSRPPATCRRDFKD 197

[Close]

BLAST of MS008531.1 vs. ExPASy Swiss-Prot
Match: Q5NBT9 (Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.1e-28
Identity = 66/167 (39.52%), Postives = 97/167 (58.08%), Query Frame = 0


Query: 7   RGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCGFTDIHD 66
           R ++FLIL +LD++   ET   LE E+G +FNM YFEE ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEEKVHAGEWDEVEKYLSGFTKVDD 65

Query: 67  NLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPGSHR------------ 126
           N YS KI+F IRK K+LEAL   +R  A +++  D+++FS +N   ++            
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDRHDRAKAVDILVKDLKVFSTFNEELYKEITQLLTLENFR 125

Query: 127 ---LLSSYKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQR 159
               LS Y + K AR +++  +K+ I ANPLF  KL  P L  +  R
Sbjct: 126 ENEQLSKYGDTKSARSIMLIELKKLIEANPLFREKLVFPTLKASRLR 172

[Close]

BLAST of MS008531.1 vs. ExPASy Swiss-Prot
Match: Q0WV90 (Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3)

HSP 1 Score: 125.2 bits (313), Expect = 7.9e-28
Identity = 66/167 (39.52%), Postives = 97/167 (58.08%), Query Frame = 0


Query: 7   RGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCGFTDIHD 66
           R ++FLIL +LD++   ET   LE E+G +FNM YFE+ ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDD 65

Query: 67  NLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNP---------------G 126
           N YS KI+F IRK K+LEAL   +R  A +++  D+++FS +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFR 125

Query: 127 SHRLLSSYKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQR 159
            +  LS Y + K AR +++  +K+ I ANPLF  KL  P L T+  R
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLR 172

[Close]

BLAST of MS008531.1 vs. ExPASy Swiss-Prot
Match: Q0J7U6 (Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR2 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.9e-28
Identity = 64/167 (38.32%), Postives = 95/167 (56.89%), Query Frame = 0


Query: 7   RGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCGFTDIHD 66
           R ++FLIL +LD++   ET   LE E+  YFNM +FE+++    ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESAFYFNMKHFEDLVQGGEWDEVEKYLSGFTKVED 65

Query: 67  NLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNP---------------G 126
           N YS KI+F IRK K+LEAL   +R  A E++  D+++F+ +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDRHDRAKAVEILVKDLKVFASFNEELFKEITQLLTLENFR 125

Query: 127 SHRLLSSYKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQR 159
            +  LS Y + K AR +++  +K+ I ANPLF  KL  PP   +  R
Sbjct: 126 QNEQLSKYGDTKSARNIMLMELKKLIEANPLFRDKLNFPPFKVSRLR 172

[Close]

BLAST of MS008531.1 vs. ExPASy Swiss-Prot
Match: Q10NY2 (Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.3e-27
Identity = 66/167 (39.52%), Postives = 96/167 (57.49%), Query Frame = 0


Query: 7   RGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCGFTDIHD 66
           R ++FLIL +LD++   ET   LE E+G YFNM YFE+ +    ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFYFNMKYFEDEVINGNWDEVERYLGGFTKVDD 65

Query: 67  NLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNP---------------G 126
           N YS KI+F IRK K+LEAL   +R  A E++  D+++F+ +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFASFNEELFKEITQLLTLENFR 125

Query: 127 SHRLLSSYKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQR 159
            +  LS Y + K AR +++  +K+ I ANPLF  KL  P L ++  R
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKSSRLR 172

[Close]

BLAST of MS008531.1 vs. ExPASy Swiss-Prot
Match: Q94AI7 (Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.0e-27
Identity = 64/161 (39.75%), Postives = 94/161 (58.39%), Query Frame = 0


Query: 7   RGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCGFTDIHD 66
           R ++FLIL +LD++   ET   LE E+G +FNM YFE+ ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDD 65

Query: 67  NLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNP---------------G 126
           N YS KI+F IRK K+LEAL   +R  A +++  D+++FS +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFR 125

Query: 127 SHRLLSSYKNLKEARKVVMANIKRCINANPLFEGKLTLPPL 153
            +  LS Y + K AR +++  +K+ I ANPLF  KL  P L
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTL 166

[Close]

BLAST of MS008531.1 vs. ExPASy TrEMBL
Match: A0A6J1CDK2 (protein TPR1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010564 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.6e-103
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0


Query: 1   MATDPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCG 60
           MATDPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCG
Sbjct: 1   MATDPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCG 60

Query: 61  FTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPGSHRLLSSYK 120
           FTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPGSHRLLSSYK
Sbjct: 61  FTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPGSHRLLSSYK 120

Query: 121 NLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMAGRGFFNGREVPPATC 180
           NLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMAGRGFFNGREVPPATC
Sbjct: 121 NLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMAGRGFFNGREVPPATC 180

Query: 181 RRESND 187
           RRESND
Sbjct: 181 RRESND 186

[Close]

BLAST of MS008531.1 vs. ExPASy TrEMBL
Match: A0A6J1CER1 (protein TPR1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010564 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.6e-100
Identity = 186/201 (92.54%), Postives = 186/201 (92.54%), Query Frame = 0


Query: 1   MATDPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCG 60
           MATDPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCG
Sbjct: 1   MATDPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCG 60

Query: 61  FTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPG--------- 120
           FTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPG         
Sbjct: 61  FTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPGLVQQAFELV 120

Query: 121 ------SHRLLSSYKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMA 180
                 SHRLLSSYKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMA
Sbjct: 121 QMEDFMSHRLLSSYKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMA 180

Query: 181 GRGFFNGREVPPATCRRESND 187
           GRGFFNGREVPPATCRRESND
Sbjct: 181 GRGFFNGREVPPATCRRESND 201

[Close]

BLAST of MS008531.1 vs. ExPASy TrEMBL
Match: A0A0A0L5R0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652830 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.6e-79
Identity = 148/188 (78.72%), Postives = 161/188 (85.64%), Query Frame = 0


Query: 1   MAT--DPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYL 60
           MAT  DPDR +LFLIL +LD QNLSETARSLECETGL+FNM+YFEE+LNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPGSHRLLSS 120
           CGFTDIHDN+YSTKIYFGIRKLKFLEAL DGERE+AREVVE DIEIF +YNPGSH LLSS
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALTDGEREVAREVVEKDIEIFDQYNPGSHMLLSS 120

Query: 121 YKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMAGRGFFNGREVPPA 180
           Y+N+KEARKVVM NIK+CI ANPL EGKL+ PPL TTLQ  YTEAMA       R  PPA
Sbjct: 121 YRNMKEARKVVMENIKKCIEANPLLEGKLSFPPLSTTLQAFYTEAMA------SRSRPPA 180

Query: 181 TCRRESND 187
           TCRR+  D
Sbjct: 181 TCRRDFKD 182

[Close]

BLAST of MS008531.1 vs. ExPASy TrEMBL
Match: A0A5D3D8T8 (Protein TPR1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G00900 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.7e-78
Identity = 148/188 (78.72%), Postives = 161/188 (85.64%), Query Frame = 0


Query: 1   MAT--DPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYL 60
           MAT  DPDR +LFLIL +LD QNLSETARSLECETGL+FNM+YFEE+LNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPGSHRLLSS 120
           CGFTDIHDN+YSTKIYFGIRKLKFLEALADGERE+AREVVE DIEIF +YNPGSH LLSS
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALADGEREVAREVVEKDIEIFDQYNPGSHILLSS 120

Query: 121 YKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMAGRGFFNGREVPPA 180
           YKN+KEARKVVM NIK+CI ANPL +GKL+ PPL TTLQ  Y EAMA RG        PA
Sbjct: 121 YKNMKEARKVVMENIKKCIEANPLLQGKLSFPPLSTTLQAFYMEAMASRG------RAPA 180

Query: 181 TCRRESND 187
           TCRR+  D
Sbjct: 181 TCRRDFKD 182

[Close]

BLAST of MS008531.1 vs. ExPASy TrEMBL
Match: E5GCC7 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.7e-78
Identity = 148/188 (78.72%), Postives = 161/188 (85.64%), Query Frame = 0


Query: 1   MAT--DPDRGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYL 60
           MAT  DPDR +LFLIL +LD QNLSETARSLECETGL+FNM+YFEE+LNCCAYNEAESYL
Sbjct: 1   MATDPDPDRALLFLILQFLDHQNLSETARSLECETGLFFNMTYFEELLNCCAYNEAESYL 60

Query: 61  CGFTDIHDNLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNPGSHRLLSS 120
           CGFTDIHDN+YSTKIYFGIRKLKFLEALADGERE+AREVVE DIEIF +YNPGSH LLSS
Sbjct: 61  CGFTDIHDNIYSTKIYFGIRKLKFLEALADGEREVAREVVEKDIEIFDQYNPGSHILLSS 120

Query: 121 YKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQRLYTEAMAGRGFFNGREVPPA 180
           YKN+KEARKVVM NIK+CI ANPL +GKL+ PPL TTLQ  Y EAMA RG        PA
Sbjct: 121 YKNMKEARKVVMENIKKCIEANPLLQGKLSFPPLSTTLQAFYMEAMASRG------RAPA 180

Query: 181 TCRRESND 187
           TCRR+  D
Sbjct: 181 TCRRDFKD 182

[Close]

BLAST of MS008531.1 vs. TAIR 10
Match: AT1G80490.1 (TOPLESS-related 1 )

HSP 1 Score: 125.2 bits (313), Expect = 5.6e-29
Identity = 66/167 (39.52%), Postives = 97/167 (58.08%), Query Frame = 0


Query: 7   RGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCGFTDIHD 66
           R ++FLIL +LD++   ET   LE E+G +FNM YFE+ ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDD 65

Query: 67  NLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNP---------------G 126
           N YS KI+F IRK K+LEAL   +R  A +++  D+++FS +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFR 125

Query: 127 SHRLLSSYKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQR 159
            +  LS Y + K AR +++  +K+ I ANPLF  KL  P L T+  R
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLR 172

[Close]

BLAST of MS008531.1 vs. TAIR 10
Match: AT1G80490.2 (TOPLESS-related 1 )

HSP 1 Score: 125.2 bits (313), Expect = 5.6e-29
Identity = 66/167 (39.52%), Postives = 97/167 (58.08%), Query Frame = 0


Query: 7   RGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCGFTDIHD 66
           R ++FLIL +LD++   ET   LE E+G +FNM YFE+ ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDD 65

Query: 67  NLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNP---------------G 126
           N YS KI+F IRK K+LEAL   +R  A +++  D+++FS +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFR 125

Query: 127 SHRLLSSYKNLKEARKVVMANIKRCINANPLFEGKLTLPPLPTTLQR 159
            +  LS Y + K AR +++  +K+ I ANPLF  KL  P L T+  R
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLR 172

[Close]

BLAST of MS008531.1 vs. TAIR 10
Match: AT1G15750.1 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 123.2 bits (308), Expect = 2.1e-28
Identity = 64/161 (39.75%), Postives = 94/161 (58.39%), Query Frame = 0


Query: 7   RGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCGFTDIHD 66
           R ++FLIL +LD++   ET   LE E+G +FNM YFE+ ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDD 65

Query: 67  NLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNP---------------G 126
           N YS KI+F IRK K+LEAL   +R  A +++  D+++FS +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFR 125

Query: 127 SHRLLSSYKNLKEARKVVMANIKRCINANPLFEGKLTLPPL 153
            +  LS Y + K AR +++  +K+ I ANPLF  KL  P L
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTL 166

[Close]

BLAST of MS008531.1 vs. TAIR 10
Match: AT1G15750.2 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 123.2 bits (308), Expect = 2.1e-28
Identity = 64/161 (39.75%), Postives = 94/161 (58.39%), Query Frame = 0


Query: 7   RGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCGFTDIHD 66
           R ++FLIL +LD++   ET   LE E+G +FNM YFE+ ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDD 65

Query: 67  NLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNP---------------G 126
           N YS KI+F IRK K+LEAL   +R  A +++  D+++FS +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFR 125

Query: 127 SHRLLSSYKNLKEARKVVMANIKRCINANPLFEGKLTLPPL 153
            +  LS Y + K AR +++  +K+ I ANPLF  KL  P L
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTL 166

[Close]

BLAST of MS008531.1 vs. TAIR 10
Match: AT1G15750.3 (Transducin family protein / WD-40 repeat family protein )

HSP 1 Score: 123.2 bits (308), Expect = 2.1e-28
Identity = 64/161 (39.75%), Postives = 94/161 (58.39%), Query Frame = 0


Query: 7   RGILFLILHYLDQQNLSETARSLECETGLYFNMSYFEEMLNCCAYNEAESYLCGFTDIHD 66
           R ++FLIL +LD++   ET   LE E+G +FNM YFE+ ++   ++E E YL GFT + D
Sbjct: 6   RELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGFTKVDD 65

Query: 67  NLYSTKIYFGIRKLKFLEALADGEREIAREVVENDIEIFSEYNP---------------G 126
           N YS KI+F IRK K+LEAL   +R  A +++  D+++FS +N                 
Sbjct: 66  NRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLTLENFR 125

Query: 127 SHRLLSSYKNLKEARKVVMANIKRCINANPLFEGKLTLPPL 153
            +  LS Y + K AR +++  +K+ I ANPLF  KL  P L
Sbjct: 126 ENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTL 166

The following BLAST results are available for this feature:

BLAST of MS008531.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139726.1	3.2e-103	100.00	protein TPR1-like isoform X2 [Momordica charantia]	[more]
XP_022139717.1	3.3e-100	92.54	protein TPR1-like isoform X1 [Momordica charantia]	[more]
XP_008452906.1	3.6e-78	78.72	PREDICTED: protein TPR1-like isoform X2 [Cucumis melo] >ADN34126.1 hypothetical ...	[more]
XP_038896847.1	5.7e-76	76.50	protein TPR1-like [Benincasa hispida]	[more]
KAE8649955.1	9.8e-76	72.91	hypothetical protein Csa_012980 [Cucumis sativus]	[more]

BLAST of MS008531.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5NBT9	2.1e-28	39.52	Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1	[more]
Q0WV90	7.9e-28	39.52	Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3	[more]
Q0J7U6	7.9e-28	38.32	Protein TOPLESS-RELATED PROTEIN 2 OS=Oryza sativa subsp. japonica OX=39947 GN=TP...	[more]
Q10NY2	2.3e-27	39.52	Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1	[more]
Q94AI7	3.0e-27	39.75	Protein TOPLESS OS=Arabidopsis thaliana OX=3702 GN=TPL PE=1 SV=1	[more]

BLAST of MS008531.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CDK2	1.6e-103	100.00	protein TPR1-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010564 PE=4...	[more]
A0A6J1CER1	1.6e-100	92.54	protein TPR1-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111010564 PE=4...	[more]
A0A0A0L5R0	4.6e-79	78.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652830 PE=4 SV=1	[more]
A0A5D3D8T8	1.7e-78	78.72	Protein TPR1-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
E5GCC7	1.7e-78	78.72	Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of MS008531.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80490.1	5.6e-29	39.52	TOPLESS-related 1	[more]
AT1G80490.2	5.6e-29	39.52	TOPLESS-related 1	[more]
AT1G15750.1	2.1e-28	39.75	Transducin family protein / WD-40 repeat family protein	[more]
AT1G15750.2	2.1e-28	39.75	Transducin family protein / WD-40 repeat family protein	[more]
AT1G15750.3	2.1e-28	39.75	Transducin family protein / WD-40 repeat family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027728	Topless family	PANTHER	PTHR44083	TOPLESS-RELATED PROTEIN 1-RELATED	coord: 3..162
None	No IPR available	PANTHER	PTHR44083:SF26	1 ENHANCER LOCUS 2 PROTEIN, PUTATIVE-RELATED	coord: 3..162
IPR006595	CTLH, C-terminal LisH motif	PROSITE	PS50897	CTLH	coord: 36..93 score: 8.184031
IPR006594	LIS1 homology motif	PROSITE	PS50896	LISH	coord: 5..37 score: 8.806388

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS008531	MS008531	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS008531.1-cds	MS008531.1-cds-scaffold4:2009809..2009891	CDS
MS008531.1-cds	MS008531.1-cds-scaffold4:2009984..2010163	CDS
MS008531.1-cds	MS008531.1-cds-scaffold4:2010276..2010344	CDS
MS008531.1-cds	MS008531.1-cds-scaffold4:2011115..2011340	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS008531.1	MS008531.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0005515	protein binding