MS007878.1 (mRNA) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGCGAGAGCGCCGATCGTTCTCACGGCGGTCGTTCAATTGAAAGCCACAGATTCAAATGGCGTAACTCCTCCTCCTCCTCGGAACTTGACCCCTTTTCCCCGTCTCTCAATTCCAAAGCCTTCTTGGATCGTCAAAACGGAGGTAATTATTCTCATAACTAAACTTCAATTTCTATTGTTTGGTTCGATGACAAGAAAAGGCTTTGGAAATTGGAAATAATTTTCCCCAATCGGCTGTATGGTCGATTTTTACCCCTGCTTAGATTTGGAATCATGGCGGAAATGCAAATATTTGATCTCTGTTCATAAGAAATCTCATCAGAAGGTTCATTTCTTTACAGTAATTTAACGCGTACTCGGTTTTAATACTCTTGTTTGGACCCTTTAACGATGATTTTAGCTCTTGTAGAGAATTATTCATGTGGAAAAACAGAAGCTAGGGTTTATCTTCTGCAGAAAATCTCCTGAAATTGTGTTTTCCTCTAGTCTATGCTATTTGTGGAGTGTCTTTGTGTTCTCTAAGTGAAACTGGAGTGTGGAAGAGCACTTAGTGGTGTTCAAAATGCTTTTGAGAGGAGCACTTGGTGCTTTCTCTTAAATGAAGTACTTATAAAAGAAATGTTTTCACTTAAATGAGCAAATTTGTGTATGTTGTTTTCATGATTCACTTGTAGATTACAACTTCGAACAAGATCCGTTCTATAGGTTGTACAGCTATATCCCTTGAGTTCCAAGGATTCACTTATGAATTGTTTGTTCTATAGCCTTTTAAAACCACATGTTATGGCGCGGGCCTCAACCATGTACTCTGTTAAATAACGTTTATTTCGTGTGGACTATCGCGTGTGTGATTCGTTTTTCTAGCTACCATATGAGAGTGCAAGACATGTTTGATTTCTGAATTTTACTTTGGAAGTGTAGTGTAACTTTCTCGTGGACTATCTGTTGTAACTTTCTTCTGTCTCCTGAACTAGTTTTTGCAGCTGTATCATTTTCGATAATTCTGTTGTATTTCTATCTCGATCCTTAGAATTAACGAAGTAAACTAGATGTATCGATCAGACCAAGTGATGGTTAAATAAGAGGTTACGAGTTAGTTTGTTTTCTTGGTCATTCTCATGGTGGTGTTTCCTCTTTTTATTGCAGTCAAATGTTAGGAGAGAAAAAAGAAAGAAGCCAGATCCACCTTGTGTGAAATGCAATGGAAGTGGAAGAGTTGACTGTCACCATTGTTGTGGAAGAGGTTTCTCTCTCTATTGAATGGCTAATTGGGACATTTTACAACAGAAATTTTGAATTGAATGTATTTTTTCATGCCCTTTAAGTAACATGTCCTTGTGCTCCAAAACTAGGGAGGACAAATTTTGCTCACCTAGAAATGCTTCCAAAAGGGGAATGGCCAAAATGGTATGATATATTTGCTTATGATTTTTCCTTTCTGAACTGAAAACTAAACTAGATATCAAATAAACTCGCCCCCTCGGTTACTCACGCAGGTGCAGGACCTGTGGTGGAAGTGGTCTCGGCTATTGCTCTCGATGCCTCGGGACGGGGGAGTACAGGTATATTATGGGCTTCCAATTCATGAAGATGGAGAACAATGAAACTGAAGATCTCAAGAAGAATGAGAATCAAGCCAACCAACAACATCACAGAAGTGCAGACTCCCTTCTA ATGGCGGCGAGAGCGCCGATCGTTCTCACGGCGGTCGTTCAATTGAAAGCCACAGATTCAAATGGCGTAACTCCTCCTCCTCCTCGGAACTTGACCCCTTTTCCCCGTCTCTCAATTCCAAAGCCTTCTTGGATCGTCAAAACGGAGAGGTTACGAGTTAGTTTGTTTTCTTGGTCATTCTCATGGTGGTGTTTCCTCTTTTTATTGCAGTCAAATGTTAGGAGAGAAAAAAGAAAGAAGCCAGATCCACCTTGTGTGAAATGCAATGGAAGTGGAAGAGTTGACTGTCACCATTGTTGTGGAAGAGGGAGGACAAATTTTGCTCACCTAGAAATGCTTCCAAAAGGGGAATGGCCAAAATGGTGCAGGACCTGTGGTGGAAGTGGTCTCGGCTATTGCTCTCGATGCCTCGGGACGGGGGAGTACAGGTATATTATGGGCTTCCAATTCATGAAGATGGAGAACAATGAAACTGAAGATCTCAAGAAGAATGAGAATCAAGCCAACCAACAACATCACAGAAGTGCAGACTCCCTTCTA ATGGCGGCGAGAGCGCCGATCGTTCTCACGGCGGTCGTTCAATTGAAAGCCACAGATTCAAATGGCGTAACTCCTCCTCCTCCTCGGAACTTGACCCCTTTTCCCCGTCTCTCAATTCCAAAGCCTTCTTGGATCGTCAAAACGGAGAGGTTACGAGTTAGTTTGTTTTCTTGGTCATTCTCATGGTGGTGTTTCCTCTTTTTATTGCAGTCAAATGTTAGGAGAGAAAAAAGAAAGAAGCCAGATCCACCTTGTGTGAAATGCAATGGAAGTGGAAGAGTTGACTGTCACCATTGTTGTGGAAGAGGGAGGACAAATTTTGCTCACCTAGAAATGCTTCCAAAAGGGGAATGGCCAAAATGGTGCAGGACCTGTGGTGGAAGTGGTCTCGGCTATTGCTCTCGATGCCTCGGGACGGGGGAGTACAGGTATATTATGGGCTTCCAATTCATGAAGATGGAGAACAATGAAACTGAAGATCTCAAGAAGAATGAGAATCAAGCCAACCAACAACATCACAGAAGTGCAGACTCCCTTCTA MAARAPIVLTAVVQLKATDSNGVTPPPPRNLTPFPRLSIPKPSWIVKTERLRVSLFSWSFSWWCFLFLLQSNVRREKRKKPDPPCVKCNGSGRVDCHHCCGRGRTNFAHLEMLPKGEWPKWCRTCGGSGLGYCSRCLGTGEYRYIMGFQFMKMENNETEDLKKNENQANQQHHRSADSLL Homology
BLAST of MS007878.1 vs. NCBI nr
Match: XP_022155760.1 (uncharacterized protein LOC111022804 [Momordica charantia]) HSP 1 Score: 324.7 bits (831), Expect = 5.0e-85 Identity = 156/180 (86.67%), Postives = 156/180 (86.67%), Query Frame = 0
BLAST of MS007878.1 vs. NCBI nr
Match: XP_038906930.1 (uncharacterized protein LOC120092800 [Benincasa hispida]) HSP 1 Score: 273.1 bits (697), Expect = 1.7e-69 Identity = 137/179 (76.54%), Postives = 143/179 (79.89%), Query Frame = 0
BLAST of MS007878.1 vs. NCBI nr
Match: KAA0039964.1 (protein SPA [Cucumis melo var. makuwa] >TYK24538.1 protein SPA [Cucumis melo var. makuwa]) HSP 1 Score: 254.6 bits (649), Expect = 6.4e-64 Identity = 127/177 (71.75%), Postives = 136/177 (76.84%), Query Frame = 0
BLAST of MS007878.1 vs. NCBI nr
Match: XP_023513705.1 (uncharacterized protein LOC111778233 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 254.2 bits (648), Expect = 8.3e-64 Identity = 128/184 (69.57%), Postives = 137/184 (74.46%), Query Frame = 0
BLAST of MS007878.1 vs. NCBI nr
Match: XP_008460069.1 (PREDICTED: uncharacterized protein LOC103498991 [Cucumis melo]) HSP 1 Score: 253.1 bits (645), Expect = 1.9e-63 Identity = 127/177 (71.75%), Postives = 135/177 (76.27%), Query Frame = 0
BLAST of MS007878.1 vs. ExPASy TrEMBL
Match: A0A6J1DNB8 (uncharacterized protein LOC111022804 OS=Momordica charantia OX=3673 GN=LOC111022804 PE=4 SV=1) HSP 1 Score: 324.7 bits (831), Expect = 2.4e-85 Identity = 156/180 (86.67%), Postives = 156/180 (86.67%), Query Frame = 0
BLAST of MS007878.1 vs. ExPASy TrEMBL
Match: A0A5D3DLS3 (Protein SPA OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00800 PE=4 SV=1) HSP 1 Score: 254.6 bits (649), Expect = 3.1e-64 Identity = 127/177 (71.75%), Postives = 136/177 (76.84%), Query Frame = 0
BLAST of MS007878.1 vs. ExPASy TrEMBL
Match: A0A1S3CCX7 (uncharacterized protein LOC103498991 OS=Cucumis melo OX=3656 GN=LOC103498991 PE=4 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 9.0e-64 Identity = 127/177 (71.75%), Postives = 135/177 (76.27%), Query Frame = 0
BLAST of MS007878.1 vs. ExPASy TrEMBL
Match: A0A6J1KM14 (uncharacterized protein LOC111494509 OS=Cucurbita maxima OX=3661 GN=LOC111494509 PE=4 SV=1) HSP 1 Score: 249.2 bits (635), Expect = 1.3e-62 Identity = 126/184 (68.48%), Postives = 137/184 (74.46%), Query Frame = 0
BLAST of MS007878.1 vs. ExPASy TrEMBL
Match: A0A6J1HHM2 (uncharacterized protein LOC111464401 OS=Cucurbita moschata OX=3662 GN=LOC111464401 PE=4 SV=1) HSP 1 Score: 245.7 bits (626), Expect = 1.4e-61 Identity = 126/184 (68.48%), Postives = 134/184 (72.83%), Query Frame = 0
BLAST of MS007878.1 vs. TAIR 10
Match: AT3G17668.1 (DnaJ/Hsp40 cysteine-rich domain superfamily protein ) HSP 1 Score: 139.8 bits (351), Expect = 2.1e-33 Identity = 63/121 (52.07%), Postives = 78/121 (64.46%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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