MS007784.1 (mRNA) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TTGTTGTTGTTGTTACCCATCAGCCTACACGCCACTCATGAATTGATTGCAACTCCAAAACAAGTTACAGTGATCATTGTTAACGAATTGGCTCTTACTCCACTATTGGGCGTTCACTGCAGATCCAAAGAAGACGATTTGGGAGTCCATATCATAGAGGCAGATAAAAGTTACTCTTTTACCTTTAAAACCAACATCTGGGAGACGACACTATTTTACTGTAGCTTCGAATGGGTGAAAGGTGAAATCCACCAGTTTACGATTTATGACTACAAAAGAGATAATCCAAAAGGTTGCACCAACTGCAGATGGCTCATTTATACGAGTGGCCCGTGTTATCAACACATAGACTCTCCCTCTCTTACTTGCTATCCTTGGGATAAG TTGTTGTTGTTGTTACCCATCAGCCTACACGCCACTCATGAATTGATTGCAACTCCAAAACAAGTTACAGTGATCATTGTTAACGAATTGGCTCTTACTCCACTATTGGGCGTTCACTGCAGATCCAAAGAAGACGATTTGGGAGTCCATATCATAGAGGCAGATAAAAGTTACTCTTTTACCTTTAAAACCAACATCTGGGAGACGACACTATTTTACTGTAGCTTCGAATGGGTGAAAGGTGAAATCCACCAGTTTACGATTTATGACTACAAAAGAGATAATCCAAAAGGTTGCACCAACTGCAGATGGCTCATTTATACGAGTGGCCCGTGTTATCAACACATAGACTCTCCCTCTCTTACTTGCTATCCTTGGGATAAG TTGTTGTTGTTGTTACCCATCAGCCTACACGCCACTCATGAATTGATTGCAACTCCAAAACAAGTTACAGTGATCATTGTTAACGAATTGGCTCTTACTCCACTATTGGGCGTTCACTGCAGATCCAAAGAAGACGATTTGGGAGTCCATATCATAGAGGCAGATAAAAGTTACTCTTTTACCTTTAAAACCAACATCTGGGAGACGACACTATTTTACTGTAGCTTCGAATGGGTGAAAGGTGAAATCCACCAGTTTACGATTTATGACTACAAAAGAGATAATCCAAAAGGTTGCACCAACTGCAGATGGCTCATTTATACGAGTGGCCCGTGTTATCAACACATAGACTCTCCCTCTCTTACTTGCTATCCTTGGGATAAG LLLLLPISLHATHELIATPKQVTVIIVNELALTPLLGVHCRSKEDDLGVHIIEADKSYSFTFKTNIWETTLFYCSFEWVKGEIHQFTIYDYKRDNPKGCTNCRWLIYTSGPCYQHIDSPSLTCYPWDK Homology
BLAST of MS007784.1 vs. NCBI nr
Match: ABY56091.1 (self-incompatibility protein 1 [Cucumis melo] >ABY56095.1 self-incompatibility protein 3 [Cucumis melo] >ABY56096.1 self-incompatibility protein 4 [Cucumis melo]) HSP 1 Score: 184.9 bits (468), Expect = 4.4e-43 Identity = 84/128 (65.62%), Postives = 104/128 (81.25%), Query Frame = 0
BLAST of MS007784.1 vs. NCBI nr
Match: ABY56092.1 (self-incompatibility protein 2 [Cucumis melo]) HSP 1 Score: 184.9 bits (468), Expect = 4.4e-43 Identity = 84/128 (65.62%), Postives = 104/128 (81.25%), Query Frame = 0
BLAST of MS007784.1 vs. NCBI nr
Match: KAA0046095.1 (self-incompatibility protein 1 [Cucumis melo var. makuwa]) HSP 1 Score: 178.7 bits (452), Expect = 3.2e-41 Identity = 85/128 (66.41%), Postives = 99/128 (77.34%), Query Frame = 0
BLAST of MS007784.1 vs. NCBI nr
Match: KAA0046284.1 (self-incompatibility protein 1 [Cucumis melo var. makuwa]) HSP 1 Score: 169.5 bits (428), Expect = 1.9e-38 Identity = 75/116 (64.66%), Postives = 94/116 (81.03%), Query Frame = 0
BLAST of MS007784.1 vs. NCBI nr
Match: EEF44294.1 (conserved hypothetical protein [Ricinus communis]) HSP 1 Score: 111.3 bits (277), Expect = 6.2e-21 Identity = 51/110 (46.36%), Postives = 66/110 (60.00%), Query Frame = 0
BLAST of MS007784.1 vs. ExPASy Swiss-Prot
Match: O23020 (S-protein homolog 5 OS=Arabidopsis thaliana OX=3702 GN=SPH5 PE=2 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 3.5e-19 Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 0
BLAST of MS007784.1 vs. ExPASy Swiss-Prot
Match: Q9FMQ4 (S-protein homolog 3 OS=Arabidopsis thaliana OX=3702 GN=SPH3 PE=2 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 1.6e-16 Identity = 46/108 (42.59%), Postives = 60/108 (55.56%), Query Frame = 0
BLAST of MS007784.1 vs. ExPASy Swiss-Prot
Match: F4JLQ5 (S-protein homolog 2 OS=Arabidopsis thaliana OX=3702 GN=SPH2 PE=3 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 1.5e-14 Identity = 47/129 (36.43%), Postives = 68/129 (52.71%), Query Frame = 0
BLAST of MS007784.1 vs. ExPASy Swiss-Prot
Match: F4JZG1 (S-protein homolog 4 OS=Arabidopsis thaliana OX=3702 GN=SPH4 PE=3 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 8.4e-13 Identity = 43/109 (39.45%), Postives = 57/109 (52.29%), Query Frame = 0
BLAST of MS007784.1 vs. ExPASy Swiss-Prot
Match: B3H730 (S-protein homolog 18 OS=Arabidopsis thaliana OX=3702 GN=SPH18 PE=3 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 1.2e-11 Identity = 37/95 (38.95%), Postives = 51/95 (53.68%), Query Frame = 0
BLAST of MS007784.1 vs. ExPASy TrEMBL
Match: B0F817 (S-protein homolog OS=Cucumis melo OX=3656 PE=3 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 2.1e-43 Identity = 84/128 (65.62%), Postives = 104/128 (81.25%), Query Frame = 0
BLAST of MS007784.1 vs. ExPASy TrEMBL
Match: B0F818 (S-protein homolog OS=Cucumis melo OX=3656 PE=3 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 2.1e-43 Identity = 84/128 (65.62%), Postives = 104/128 (81.25%), Query Frame = 0
BLAST of MS007784.1 vs. ExPASy TrEMBL
Match: A0A5A7TXE8 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold157G00180 PE=3 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41 Identity = 85/128 (66.41%), Postives = 99/128 (77.34%), Query Frame = 0
BLAST of MS007784.1 vs. ExPASy TrEMBL
Match: A0A5A7TT98 (S-protein homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold384G00010 PE=3 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 9.3e-39 Identity = 75/116 (64.66%), Postives = 94/116 (81.03%), Query Frame = 0
BLAST of MS007784.1 vs. ExPASy TrEMBL
Match: B9RWP2 (S-protein homolog OS=Ricinus communis OX=3988 GN=RCOM_1023130 PE=3 SV=1) HSP 1 Score: 111.3 bits (277), Expect = 3.0e-21 Identity = 51/110 (46.36%), Postives = 66/110 (60.00%), Query Frame = 0
BLAST of MS007784.1 vs. TAIR 10
Match: AT1G04645.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 95.9 bits (237), Expect = 2.5e-20 Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 0
BLAST of MS007784.1 vs. TAIR 10
Match: AT5G12060.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 87.0 bits (214), Expect = 1.2e-17 Identity = 46/108 (42.59%), Postives = 60/108 (55.56%), Query Frame = 0
BLAST of MS007784.1 vs. TAIR 10
Match: AT1G26796.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 85.9 bits (211), Expect = 2.6e-17 Identity = 47/117 (40.17%), Postives = 63/117 (53.85%), Query Frame = 0
BLAST of MS007784.1 vs. TAIR 10
Match: AT1G26799.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 84.7 bits (208), Expect = 5.8e-17 Identity = 45/119 (37.82%), Postives = 63/119 (52.94%), Query Frame = 0
BLAST of MS007784.1 vs. TAIR 10
Match: AT3G16970.1 (Plant self-incompatibility protein S1 family ) HSP 1 Score: 82.0 bits (201), Expect = 3.7e-16 Identity = 43/111 (38.74%), Postives = 60/111 (54.05%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
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