MS006511.1 (mRNA) Bitter gourd (TR) v1

Overview
NameMS006511.1
TypemRNA
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionBEST Arabidopsis thaliana protein match is: methyltransferases .
Locationscaffold404: 561025 .. 561108 (-)
Sequence length84
RNA-Seq ExpressionMS006511.1
SyntenyMS006511.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAGGGGTTTATTGGGAATGCTCGTCTTTTCTTTTGTATGGAAGTTTGGAAGATGAGGGAGTTGCAGTGCATCAATGGTGGGGT

mRNA sequence

AGAGGGGTTTATTGGGAATGCTCGTCTTTTCTTTTGTATGGAAGTTTGGAAGATGAGGGAGTTGCAGTGCATCAATGGTGGGGT

Coding sequence (CDS)

AGAGGGGTTTATTGGGAATGCTCGTCTTTTCTTTTGTATGGAAGTTTGGAAGATGAGGGAGTTGCAGTGCATCAATGGTGGGGT

Protein sequence

RGVYWECSSFLLYGSLEDEGVAVHQWWG
Homology
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BLAST of MS006511.1 vs. TAIR 10
Match: AT1G58120.1 (BEST Arabidopsis thaliana protein match is: methyltransferases (TAIR:AT5G01710.1); Has 93 Blast hits to 93 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.4 bits (111), Expect = 2.2e-06
Identity = 19/25 (76.00%), Postives = 19/25 (76.00%), Query Frame = 0 

Query: 4   YWECSSFLLYGSLEDEGVAVHQWWG 29
           YWEC    LYG L DEGVAVHQWWG
Sbjct: 398 YWEC--LALYGKLRDEGVAVHQWWG 420

The following BLAST results are available for this feature:
BLAST of MS006511.1 vs.
Match NameE-valueIdentityDescription
BLAST of MS006511.1 vs.
Match NameE-valueIdentityDescription
BLAST of MS006511.1 vs.
Match NameE-valueIdentityDescription
BLAST of MS006511.1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G58120.12.2e-0676.00BEST Arabidopsis thaliana protein match is: methyltransferases (TAIR:AT5G01710.1... [more]
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
MS006511MS006511gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
MS006511.1-cdsMS006511.1-cds-scaffold404:561025..561108CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
MS006511.1MS006511.1-proteinpolypeptide