MS006377.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS006377.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	50S ribosomal protein L22, chloroplastic
Location	scaffold327: 203949 .. 204218 (-)
Sequence length	270
RNA-Seq Expression	MS006377.1
Synteny	MS006377.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCAAACACGCTTAATGATAAAAAAGAATCGATATACAGAAGTATACGCTTTTGGTCAACATATATGTATGTCCGCTCACAAAGCACGAAGAGTAATTGATCAGATTCGGGGACGTTCCTACGAAGAAACAATGATGATACTCGAACTCATGCCTTATCACGCATGTTATCCAATTTTAAAATTGGTTTATTCGACAGCAGCAAATGCTAGTCACAATATGGGTTTCCACGAAAGAAATTTAGTCATTAGTAAAGCGGAAGTCAACAAA

mRNA sequence

AGTCAAACACGCTTAATGATAAAAAAGAATCGATATACAGAAGTATACGCTTTTGGTCAACATATATGTATGTCCGCTCACAAAGCACGAAGAGTAATTGATCAGATTCGGGGACGTTCCTACGAAGAAACAATGATGATACTCGAACTCATGCCTTATCACGCATGTTATCCAATTTTAAAATTGGTTTATTCGACAGCAGCAAATGCTAGTCACAATATGGGTTTCCACGAAAGAAATTTAGTCATTAGTAAAGCGGAAGTCAACAAA

Coding sequence (CDS)

AGTCAAACACGCTTAATGATAAAAAAGAATCGATATACAGAAGTATACGCTTTTGGTCAACATATATGTATGTCCGCTCACAAAGCACGAAGAGTAATTGATCAGATTCGGGGACGTTCCTACGAAGAAACAATGATGATACTCGAACTCATGCCTTATCACGCATGTTATCCAATTTTAAAATTGGTTTATTCGACAGCAGCAAATGCTAGTCACAATATGGGTTTCCACGAAAGAAATTTAGTCATTAGTAAAGCGGAAGTCAACAAA

Protein sequence

SQTRLMIKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAANASHNMGFHERNLVISKAEVNK

Homology

[Close]

BLAST of MS006377.1 vs. NCBI nr
Match: AXU40433.1 (ribosomal protein L22 [Gomphogyne cissiformis var. villosa])

HSP 1 Score: 163.3 bits (412), Expect = 9.7e-37
Identity = 80/84 (95.24%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 7  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYST 66
          IKKNRYTEVYA GQHICMSAHKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS 
Sbjct: 5  IKKNRYTEVYALGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLVYSA 64

Query: 67 AANASHNMGFHERNLVISKAEVNK 91
          AANASHNMGF+ERNLVISKAEVNK
Sbjct: 65 AANASHNMGFNERNLVISKAEVNK 88

[Close]

BLAST of MS006377.1 vs. NCBI nr
Match: YP_009526341.1 (ribosomal protein L22 [Hemsleya lijiangensis] >AXU40520.1 ribosomal protein L22 [Hemsleya lijiangensis])

HSP 1 Score: 163.3 bits (412), Expect = 9.7e-37
Identity = 80/84 (95.24%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 7  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYST 66
          IKKNRYTEVYA GQHICMSAHKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS 
Sbjct: 5  IKKNRYTEVYALGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLVYSA 64

Query: 67 AANASHNMGFHERNLVISKAEVNK 91
          AANASHNMGF+ERNLVISKAEVNK
Sbjct: 65 AANASHNMGFNERNLVISKAEVNK 88

[Close]

BLAST of MS006377.1 vs. NCBI nr
Match: YP_010119773.1 (ribosomal protein L22 [Hemsleya zhejiangensis] >QRC26947.1 ribosomal protein L22 [Hemsleya zhejiangensis])

HSP 1 Score: 163.3 bits (412), Expect = 9.7e-37
Identity = 80/84 (95.24%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 7  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYST 66
          IKKNRYTEVYA GQHICMSAHKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS 
Sbjct: 5  IKKNRYTEVYALGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLVYSA 64

Query: 67 AANASHNMGFHERNLVISKAEVNK 91
          AANASHNMGF+ERNLVISKAEVNK
Sbjct: 65 AANASHNMGFNERNLVISKAEVNK 88

[Close]

BLAST of MS006377.1 vs. NCBI nr
Match: YP_009753297.1 (ribosomal protein L22 [Nothoalsomitra suberosa] >QIT06369.1 ribosomal protein L22 [Nothoalsomitra suberosa])

HSP 1 Score: 161.4 bits (407), Expect = 3.7e-36
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 7  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYST 66
          IKKNRYTEVYA GQHICMS HKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS 
Sbjct: 5  IKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLVYSA 64

Query: 67 AANASHNMGFHERNLVISKAEVNK 91
          AANASHNMGF+ERNLVISKAEVNK
Sbjct: 65 AANASHNMGFNERNLVISKAEVNK 88

[Close]

BLAST of MS006377.1 vs. NCBI nr
Match: YP_009752959.1 (ribosomal protein L22 [Momordica sessilifolia] >QIT06031.1 ribosomal protein L22 [Momordica sessilifolia])

HSP 1 Score: 160.2 bits (404), Expect = 8.2e-36
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 7  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYST 66
          IKKNRYTEVYA GQHICMSAHKARRVIDQIRGRSYEETMMILELMPY ACY ILKLVYS 
Sbjct: 5  IKKNRYTEVYALGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYRACYQILKLVYSA 64

Query: 67 AANASHNMGFHERNLVISKAEVNK 91
          AANASHNMGF+ERNLVISKAEVNK
Sbjct: 65 AANASHNMGFNERNLVISKAEVNK 88

[Close]

BLAST of MS006377.1 vs. ExPASy Swiss-Prot
Match: Q4VZM9 (50S ribosomal protein L22, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-35
Identity = 75/83 (90.36%), Postives = 78/83 (93.98%), Query Frame = 0


Query: 8  KKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTA 67
          KKNRY EVYA GQHICMS HKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS A
Sbjct: 5  KKNRY-EVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLVYSAA 64

Query: 68 ANASHNMGFHERNLVISKAEVNK 91
          ANASHNMGF+ER+LVISKAEVN+
Sbjct: 65 ANASHNMGFNERDLVISKAEVNQ 86

[Close]

BLAST of MS006377.1 vs. ExPASy Swiss-Prot
Match: Q09G06 (50S ribosomal protein L22, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 5.5e-35
Identity = 72/84 (85.71%), Postives = 77/84 (91.67%), Query Frame = 0


Query: 7  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYST 66
          IKKN  TEVYA GQHICMSAHKARRVIDQIRGRSYEET+MILELMPY ACYPI KLVYS 
Sbjct: 5  IKKNPDTEVYALGQHICMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVYSA 64

Query: 67 AANASHNMGFHERNLVISKAEVNK 91
          AANASHNMGF+E +L+ISKAEVN+
Sbjct: 65 AANASHNMGFNEADLIISKAEVNE 88

[Close]

BLAST of MS006377.1 vs. ExPASy Swiss-Prot
Match: A6MM76 (50S ribosomal protein L22, chloroplastic OS=Buxus microphylla OX=153571 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.6e-34
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 6  MIKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYS 65
          MIKKNR  EVYA GQHICMSAHKARRVIDQIRGRSYEE +MILELMPY ACYPI KLVYS
Sbjct: 1  MIKKNRDAEVYALGQHICMSAHKARRVIDQIRGRSYEEALMILELMPYRACYPIFKLVYS 60

Query: 66 TAANASHNMGFHERNLVISKAEVN 90
           AANASHNMGF+E + VISKAEVN
Sbjct: 61 AAANASHNMGFNEADSVISKAEVN 84

[Close]

BLAST of MS006377.1 vs. ExPASy Swiss-Prot
Match: Q49KV9 (50S ribosomal protein L22, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.0e-33
Identity = 70/82 (85.37%), Postives = 74/82 (90.24%), Query Frame = 0


Query: 9  KNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTAA 68
          KN Y EVYA GQHI MSAHKARRVIDQIRGRSYEET+MILELMPY ACYPI KLVYS AA
Sbjct: 7  KNLYGEVYALGQHISMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVYSAAA 66

Query: 69 NASHNMGFHERNLVISKAEVNK 91
          NASHNMGF+E +LVISKAEVN+
Sbjct: 67 NASHNMGFNEASLVISKAEVNE 88

[Close]

BLAST of MS006377.1 vs. ExPASy Swiss-Prot
Match: B1NWI9 (50S ribosomal protein L22, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.0e-33
Identity = 68/83 (81.93%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 8  KKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTA 67
          K+N Y EVYA GQHICMS HKARR+IDQIRGRSYEET+MILELMPY ACYPI KL+YS A
Sbjct: 8  KRNTY-EVYALGQHICMSPHKARRIIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAA 67

Query: 68 ANASHNMGFHERNLVISKAEVNK 91
          ANASHNMGF+E NL+ISKAEVN+
Sbjct: 68 ANASHNMGFNEANLIISKAEVNE 89

[Close]

BLAST of MS006377.1 vs. ExPASy TrEMBL
Match: A0A346TM43 (50S ribosomal protein L22, chloroplastic OS=Gomphogyne cissiformis var. villosa OX=2315457 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.7e-37
Identity = 80/84 (95.24%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 7  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYST 66
          IKKNRYTEVYA GQHICMSAHKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS 
Sbjct: 5  IKKNRYTEVYALGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLVYSA 64

Query: 67 AANASHNMGFHERNLVISKAEVNK 91
          AANASHNMGF+ERNLVISKAEVNK
Sbjct: 65 AANASHNMGFNERNLVISKAEVNK 88

[Close]

BLAST of MS006377.1 vs. ExPASy TrEMBL
Match: A0A346TMD0 (50S ribosomal protein L22, chloroplastic OS=Hemsleya lijiangensis OX=210377 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.7e-37
Identity = 80/84 (95.24%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 7  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYST 66
          IKKNRYTEVYA GQHICMSAHKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS 
Sbjct: 5  IKKNRYTEVYALGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLVYSA 64

Query: 67 AANASHNMGFHERNLVISKAEVNK 91
          AANASHNMGF+ERNLVISKAEVNK
Sbjct: 65 AANASHNMGFNERNLVISKAEVNK 88

[Close]

BLAST of MS006377.1 vs. ExPASy TrEMBL
Match: A0A6H0EXV8 (50S ribosomal protein L22, chloroplastic OS=Nothoalsomitra suberosa OX=386201 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.8e-36
Identity = 79/84 (94.05%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 7  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYST 66
          IKKNRYTEVYA GQHICMS HKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS 
Sbjct: 5  IKKNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLVYSA 64

Query: 67 AANASHNMGFHERNLVISKAEVNK 91
          AANASHNMGF+ERNLVISKAEVNK
Sbjct: 65 AANASHNMGFNERNLVISKAEVNK 88

[Close]

BLAST of MS006377.1 vs. ExPASy TrEMBL
Match: A0A6H0ERD1 (50S ribosomal protein L22, chloroplastic OS=Luffa aegyptiaca OX=3670 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.0e-36
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 7  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYST 66
          IK+NRYTEVYA GQHICMS HKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS 
Sbjct: 5  IKRNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLVYSA 64

Query: 67 AANASHNMGFHERNLVISKAEVNK 91
          AANASHNMGF+ERNLVISKAEVNK
Sbjct: 65 AANASHNMGFNERNLVISKAEVNK 88

[Close]

BLAST of MS006377.1 vs. ExPASy TrEMBL
Match: A0A7D5C2Q7 (50S ribosomal protein L22, chloroplastic OS=Luffa acutangula OX=56866 GN=rpl22 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.0e-36
Identity = 78/84 (92.86%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 7  IKKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYST 66
          IK+NRYTEVYA GQHICMS HKARRVIDQIRGRSYEETMMILELMPY ACYPILKLVYS 
Sbjct: 5  IKRNRYTEVYALGQHICMSPHKARRVIDQIRGRSYEETMMILELMPYRACYPILKLVYSA 64

Query: 67 AANASHNMGFHERNLVISKAEVNK 91
          AANASHNMGF+ERNLVISKAEVNK
Sbjct: 65 AANASHNMGFNERNLVISKAEVNK 88

[Close]

BLAST of MS006377.1 vs. TAIR 10
Match: ATCG00810.1 (ribosomal protein L22 )

HSP 1 Score: 137.9 bits (346), Expect = 4.0e-33
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = 0


Query: 8  KKNRYTEVYAFGQHICMSAHKARRVIDQIRGRSYEETMMILELMPYHACYPILKLVYSTA 67
          KK  YTEVYA GQ+I MSAHKARRVIDQIRGRSYEE +MILELMPY  CYPI KLVYS A
Sbjct: 6  KKKSYTEVYALGQYISMSAHKARRVIDQIRGRSYEEALMILELMPYRGCYPIFKLVYSAA 65

Query: 68 ANASHNMGFHERNLVISKAEVNK 91
          ANASHN GF E NLVISKAEVN+
Sbjct: 66 ANASHNKGFKETNLVISKAEVNQ 88

The following BLAST results are available for this feature:

BLAST of MS006377.1 vs. NCBI nr


Match Name	E-value	Identity	Description
AXU40433.1	9.7e-37	95.24	ribosomal protein L22 [Gomphogyne cissiformis var. villosa]	[more]
YP_009526341.1	9.7e-37	95.24	ribosomal protein L22 [Hemsleya lijiangensis] >AXU40520.1 ribosomal protein L22 ...	[more]
YP_010119773.1	9.7e-37	95.24	ribosomal protein L22 [Hemsleya zhejiangensis] >QRC26947.1 ribosomal protein L22...	[more]
YP_009753297.1	3.7e-36	94.05	ribosomal protein L22 [Nothoalsomitra suberosa] >QIT06369.1 ribosomal protein L2...	[more]
YP_009752959.1	8.2e-36	94.05	ribosomal protein L22 [Momordica sessilifolia] >QIT06031.1 ribosomal protein L22...	[more]

BLAST of MS006377.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZM9	1.4e-35	90.36	50S ribosomal protein L22, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl22 PE=...	[more]
Q09G06	5.5e-35	85.71	50S ribosomal protein L22, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl...	[more]
A6MM76	1.6e-34	85.71	50S ribosomal protein L22, chloroplastic OS=Buxus microphylla OX=153571 GN=rpl22...	[more]
Q49KV9	3.0e-33	85.37	50S ribosomal protein L22, chloroplastic OS=Eucalyptus globulus subsp. globulus ...	[more]
B1NWI9	3.0e-33	81.93	50S ribosomal protein L22, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl22 P...	[more]

BLAST of MS006377.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A346TM43	4.7e-37	95.24	50S ribosomal protein L22, chloroplastic OS=Gomphogyne cissiformis var. villosa ...	[more]
A0A346TMD0	4.7e-37	95.24	50S ribosomal protein L22, chloroplastic OS=Hemsleya lijiangensis OX=210377 GN=r...	[more]
A0A6H0EXV8	1.8e-36	94.05	50S ribosomal protein L22, chloroplastic OS=Nothoalsomitra suberosa OX=386201 GN...	[more]
A0A6H0ERD1	4.0e-36	92.86	50S ribosomal protein L22, chloroplastic OS=Luffa aegyptiaca OX=3670 GN=rpl22 PE...	[more]
A0A7D5C2Q7	4.0e-36	92.86	50S ribosomal protein L22, chloroplastic OS=Luffa acutangula OX=56866 GN=rpl22 P...	[more]

BLAST of MS006377.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00810.1	4.0e-33	81.93	ribosomal protein L22	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036394	Ribosomal protein L22/L17 superfamily	GENE3D	3.90.470.10	Ribosomal protein L22/L17	coord: 9..90 e-value: 1.4E-24 score: 88.3
IPR036394	Ribosomal protein L22/L17 superfamily	SUPERFAMILY	54843	Ribosomal protein L22	coord: 9..90
IPR001063	Ribosomal protein L22/L17	PFAM	PF00237	Ribosomal_L22	coord: 19..90 e-value: 1.0E-12 score: 48.1
IPR001063	Ribosomal protein L22/L17	CDD	cd00336	Ribosomal_L22	coord: 15..90 e-value: 7.49998E-20 score: 74.8346
IPR005727	Ribosomal protein L22, bacterial/chloroplast-type	PANTHER	PTHR13501	CHLOROPLAST 50S RIBOSOMAL PROTEIN L22-RELATED	coord: 9..90
None	No IPR available	PANTHER	PTHR13501:SF11	RIBOSOMAL PROTEIN L22/L17-RELATED	coord: 9..90

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS006377	MS006377	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS006377.1-cds	MS006377.1-cds-scaffold327:203949..204218	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS006377.1	MS006377.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome